Construct: ORF ccsbBroadEn_05978
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001277.1_s300c1, BRDN0000386632
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDH18 (1016)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1016 | CDH18 | cadherin 18 | NM_001291956.3 | 99.7% | 99.3% | (many diffs) |
| 2 | human | 1016 | CDH18 | cadherin 18 | NM_001349556.2 | 99.7% | 99.3% | (many diffs) |
| 3 | human | 1016 | CDH18 | cadherin 18 | NM_001349558.2 | 99.7% | 99.3% | (many diffs) |
| 4 | human | 1016 | CDH18 | cadherin 18 | NM_001349559.2 | 99.7% | 99.3% | (many diffs) |
| 5 | human | 1016 | CDH18 | cadherin 18 | NM_004934.5 | 99.7% | 99.3% | (many diffs) |
| 6 | human | 1016 | CDH18 | cadherin 18 | XM_005248228.4 | 99.7% | 99.3% | (many diffs) |
| 7 | human | 1016 | CDH18 | cadherin 18 | XM_006714435.4 | 99.7% | 99.3% | (many diffs) |
| 8 | human | 1016 | CDH18 | cadherin 18 | XM_017008924.2 | 99.7% | 99.3% | (many diffs) |
| 9 | human | 1016 | CDH18 | cadherin 18 | XM_017008926.2 | 99.7% | 99.3% | (many diffs) |
| 10 | human | 1016 | CDH18 | cadherin 18 | XM_017008927.2 | 99.7% | 99.3% | (many diffs) |
| 11 | human | 1016 | CDH18 | cadherin 18 | XM_017008928.2 | 99.7% | 99.3% | (many diffs) |
| 12 | human | 1016 | CDH18 | cadherin 18 | XM_017008929.2 | 99.7% | 99.3% | (many diffs) |
| 13 | human | 1016 | CDH18 | cadherin 18 | XM_017008930.2 | 99.7% | 99.3% | (many diffs) |
| 14 | human | 1016 | CDH18 | cadherin 18 | XM_011513928.3 | 91.1% | 90% | (many diffs) |
| 15 | human | 1016 | CDH18 | cadherin 18 | XM_011513929.3 | 78.1% | 77.7% | (many diffs) |
| 16 | human | 1016 | CDH18 | cadherin 18 | NM_001291957.2 | 72.5% | 67.5% | (many diffs) |
| 17 | human | 1016 | CDH18 | cadherin 18 | NM_001349560.2 | 72.5% | 67.5% | (many diffs) |
| 18 | human | 1016 | CDH18 | cadherin 18 | XM_011513930.3 | 72.5% | 67.5% | (many diffs) |
| 19 | human | 1016 | CDH18 | cadherin 18 | NM_001167667.3 | 72.4% | 68.2% | (many diffs) |
| 20 | human | 1016 | CDH18 | cadherin 18 | NM_001349561.2 | 72.4% | 68.2% | (many diffs) |
| 21 | human | 1016 | CDH18 | cadherin 18 | NM_001349562.2 | 71.5% | 71.2% | (many diffs) |
| 22 | human | 1016 | CDH18 | cadherin 18 | NM_001349563.2 | 71.5% | 71.2% | (many diffs) |
| 23 | mouse | 320865 | Cdh18 | cadherin 18 | NM_001081299.1 | 89% | 95.5% | (many diffs) |
| 24 | mouse | 320865 | Cdh18 | cadherin 18 | XM_006520094.3 | 89% | 95.5% | (many diffs) |
| 25 | mouse | 320865 | Cdh18 | cadherin 18 | XM_006520095.3 | 89% | 95.5% | (many diffs) |
| 26 | mouse | 320865 | Cdh18 | cadherin 18 | XM_006520096.3 | 89% | 95.5% | (many diffs) |
| 27 | mouse | 320865 | Cdh18 | cadherin 18 | XM_011245360.2 | 89% | 95.5% | (many diffs) |
| 28 | mouse | 320865 | Cdh18 | cadherin 18 | XM_006520097.3 | 64.6% | 65.4% | (many diffs) |
| 29 | mouse | 320865 | Cdh18 | cadherin 18 | XM_006520098.3 | 64.5% | 65.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2436
- ORF length:
- 2370
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA AATTACTTGC ACATCTTGCA TCTGTCCAGT CCTAGTGTGT CTCTGTTTTG 121 TGCAGAGGTG TTATGGAACT GCTCACCACA GCTCCATCAA GGTGATGAGA AACCAAACCA 181 AACACATTGA AGGTGAAACC GAAGTCCATC ATCGTCCCAA AAGGGGATGG GTATGGAATC 241 AGTTCTTTGT TTTAGAAGAA CATATGGGAC CAGATCCTCA GTATGTTGGA AAGCTGCACT 301 CCAATTCTGA CAAAGGTGAT GGATCTGTCA AGTACATCCT TACTGGAGAG GGTGCTGGGA 361 CTATATTTAT CATTGACGAT ACCACGGGTG ATATCCACTC AACAAAAAGC CTAGACAGAG 421 AGCAGAAGAC CCACTATGTG CTTCATGCTC AAGCTATTGA TAGACGTACA AACAAACCTC 481 TTGAGCCTGA ATCCGAGTTC ATCATCAAAG TGCAAGACAT CAATGACAAC GCTCCAAAAT 541 TCACAGATGG ACCATACATT GTTACTGTGC CTGAAATGTC AGATATGGGT ACCTCTGTTC 601 TACAGGTGAC AGCTACTGAT GCAGATGACC CTACCTATGG AAACAGCGCT CGGGTGGTTT 661 ACAGCATTCT CCAGGGACAA CCCTACTTCT CCGTCGACCC TAAAACAGGA GTTATTAGAA 721 CGGCCTTACA TAACATGGAC GGAGAAGCCA GAGAACATTA CTCCGTAGTC ATTCAAGCCA 781 AAGACATGGC TGGGCAAGTT GGAGGGCTTT CAGGATCTAC AACAGTCAAC ATCACCTTAA 841 CCGATGTCAA TGACAACACA CCACGCTTTC CTCAAAAACA CTATCAGCTA TATGTTCCTG 901 AGTCAGCTCA AGTTGGTTCA GCTGTTGGGA AAATCAAGGC AAATGATGCT GACACTGGCT 961 CAAATGCTGA CATGACCTAC TCCATCATAA ATGGTGATGG CATGGGAATA TTCTCAATCT 1021 CCACTGACAA AGAGACCAGA GAAGGAATCC TTTCTTTAAA GAAGCCACTG AACTATGAGA 1081 AAAAGAAGTC ATATACCCTC AACATAGAAG GAGCAAATAC ACATCTTGAT TTTCGCTTTT 1141 CTCACTTGGG TCCTTTTAAA GATGCTACTA TGCTGAAGAT CATTGTTGGG GATGTAGATG 1201 AACCACCACT ATTTTCCATG CCTTCCTACC TCATGGAAGT CTACGAAAAT GCCAAGATTG 1261 GGACCGTCGT TGGTACAGTT TTGGCACAAG ATCCTGACAG TATTAACAGC TTAGTAAGAT 1321 ACTTCATCAA CTACAATGTT GAAGACGACA GATTTTTCAA CATTGATGCC AATACTGGGA 1381 CCATTAGGAC TACAAAGGTT CTCGACAGAG AAGAAACTCC ATGGTACAAC ATCACAGTCA 1441 CTGCTTCAGA AATTGATAAT CCTGATTTGC TGAGCCATGT CACAGTGGGT ATTAGAGTTC 1501 TGGATGTCAA TGACAATCCA CCCGAACTTG CCAGGGAATA TGATATTATT GTATGTGAAA 1561 ATTCTAAGCC TGGCCAGGTT ATTCATACCA TCAGTGCCAC TGATAAAGAT GATTTTGCCA 1621 ATGGACCAAG GTTTAACTTC TTTCTTGATG AGCGCCTGCC TGTAAATCCA AACTTCACTC 1681 TGAAGGACAA TGAAGATAAC ACAGCCAGCA TTCTGACAAG GCGGAGGAGA TTTAGTCGAA 1741 CTGTTCAGGA TGTGTATTAT CTGCCCATTA TGATCTCTGA TGGTGGAATC CCCTCTCTCA 1801 GCAGCAGCAG CACCCTCACC ATCAGGGTTT GTGCATGCGA GAGAGATGGG CGTGTGCGGA 1861 CCTGCCATGC AGAAGCCTTC CTGTCCTCGG CTGGTTTGAG TACAGGAGCC TTAATCGCTA 1921 TTCTTCTCTG TGTTCTCATT CTCCTGGCAA TTGTGGTACT TTTTATCACC CTGAGGCGCA 1981 GCAAAAAAGA GCCCTTGATC ATTTCAGAAG AGGATGTACG GGAGAACGTG GTCACCTATG 2041 ATGATGAAGG AGGCGGAGAG GAAGACACAG GGGCCTTTGA CATCACAGCC TTGAGGAATC 2101 CTTCTGCTGC TGAGGAGCTC AAGTACCGGA GGGATATCAG ACCTGAAGTG AAGCTCACTC 2161 CCAGACACCA GACATCATCC ACCCTGGAAA GCATAGATGT TCAGGAATTT ATTAAGCAAA 2221 GACTGGCAGA AGCAGACCTA GACCCTAGCG TTCCCCCTTA TGACTCTCTT CAGACTTATG 2281 CCTATGAGGG TCAGAGATCA GAAGCTGGGT CTATCAGCTC GCTGGATTCA GCAACGACAC 2341 AATCAGACCA GGATTATCAC TACCTTGGAG ACTGGGGACC CGAGTTTAAA AAGTTAGCTG 2401 AACTCTATGG AGAAATAGAA TCTGAAAGAA CAACTCACCC AACTTTCTTG TACAAAGTtg 2461 gcattataag aaagcattgc ttatcaattt gttgcaacga ac