Construct: ORF ccsbBroadEn_05978

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001277.1_s300c1, BRDN0000386632
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDH18 (1016)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1016 CDH18 cadherin 18 NM_001291956.3 99.7% 99.3% (many diffs)
2 human 1016 CDH18 cadherin 18 NM_001349556.2 99.7% 99.3% (many diffs)
3 human 1016 CDH18 cadherin 18 NM_001349558.2 99.7% 99.3% (many diffs)
4 human 1016 CDH18 cadherin 18 NM_001349559.2 99.7% 99.3% (many diffs)
5 human 1016 CDH18 cadherin 18 NM_004934.5 99.7% 99.3% (many diffs)
6 human 1016 CDH18 cadherin 18 XM_005248228.4 99.7% 99.3% (many diffs)
7 human 1016 CDH18 cadherin 18 XM_006714435.4 99.7% 99.3% (many diffs)
8 human 1016 CDH18 cadherin 18 XM_017008924.2 99.7% 99.3% (many diffs)
9 human 1016 CDH18 cadherin 18 XM_017008926.2 99.7% 99.3% (many diffs)
10 human 1016 CDH18 cadherin 18 XM_017008927.2 99.7% 99.3% (many diffs)
11 human 1016 CDH18 cadherin 18 XM_017008928.2 99.7% 99.3% (many diffs)
12 human 1016 CDH18 cadherin 18 XM_017008929.2 99.7% 99.3% (many diffs)
13 human 1016 CDH18 cadherin 18 XM_017008930.2 99.7% 99.3% (many diffs)
14 human 1016 CDH18 cadherin 18 XM_011513928.3 91.1% 90% (many diffs)
15 human 1016 CDH18 cadherin 18 XM_011513929.3 78.1% 77.7% (many diffs)
16 human 1016 CDH18 cadherin 18 NM_001291957.2 72.5% 67.5% (many diffs)
17 human 1016 CDH18 cadherin 18 NM_001349560.2 72.5% 67.5% (many diffs)
18 human 1016 CDH18 cadherin 18 XM_011513930.3 72.5% 67.5% (many diffs)
19 human 1016 CDH18 cadherin 18 NM_001167667.3 72.4% 68.2% (many diffs)
20 human 1016 CDH18 cadherin 18 NM_001349561.2 72.4% 68.2% (many diffs)
21 human 1016 CDH18 cadherin 18 NM_001349562.2 71.5% 71.2% (many diffs)
22 human 1016 CDH18 cadherin 18 NM_001349563.2 71.5% 71.2% (many diffs)
23 mouse 320865 Cdh18 cadherin 18 NM_001081299.1 89% 95.5% (many diffs)
24 mouse 320865 Cdh18 cadherin 18 XM_006520094.3 89% 95.5% (many diffs)
25 mouse 320865 Cdh18 cadherin 18 XM_006520095.3 89% 95.5% (many diffs)
26 mouse 320865 Cdh18 cadherin 18 XM_006520096.3 89% 95.5% (many diffs)
27 mouse 320865 Cdh18 cadherin 18 XM_011245360.2 89% 95.5% (many diffs)
28 mouse 320865 Cdh18 cadherin 18 XM_006520097.3 64.6% 65.4% (many diffs)
29 mouse 320865 Cdh18 cadherin 18 XM_006520098.3 64.5% 65.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2436
ORF length:
2370
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA AATTACTTGC ACATCTTGCA TCTGTCCAGT CCTAGTGTGT CTCTGTTTTG
121TGCAGAGGTG TTATGGAACT GCTCACCACA GCTCCATCAA GGTGATGAGA AACCAAACCA
181AACACATTGA AGGTGAAACC GAAGTCCATC ATCGTCCCAA AAGGGGATGG GTATGGAATC
241AGTTCTTTGT TTTAGAAGAA CATATGGGAC CAGATCCTCA GTATGTTGGA AAGCTGCACT
301CCAATTCTGA CAAAGGTGAT GGATCTGTCA AGTACATCCT TACTGGAGAG GGTGCTGGGA
361CTATATTTAT CATTGACGAT ACCACGGGTG ATATCCACTC AACAAAAAGC CTAGACAGAG
421AGCAGAAGAC CCACTATGTG CTTCATGCTC AAGCTATTGA TAGACGTACA AACAAACCTC
481TTGAGCCTGA ATCCGAGTTC ATCATCAAAG TGCAAGACAT CAATGACAAC GCTCCAAAAT
541TCACAGATGG ACCATACATT GTTACTGTGC CTGAAATGTC AGATATGGGT ACCTCTGTTC
601TACAGGTGAC AGCTACTGAT GCAGATGACC CTACCTATGG AAACAGCGCT CGGGTGGTTT
661ACAGCATTCT CCAGGGACAA CCCTACTTCT CCGTCGACCC TAAAACAGGA GTTATTAGAA
721CGGCCTTACA TAACATGGAC GGAGAAGCCA GAGAACATTA CTCCGTAGTC ATTCAAGCCA
781AAGACATGGC TGGGCAAGTT GGAGGGCTTT CAGGATCTAC AACAGTCAAC ATCACCTTAA
841CCGATGTCAA TGACAACACA CCACGCTTTC CTCAAAAACA CTATCAGCTA TATGTTCCTG
901AGTCAGCTCA AGTTGGTTCA GCTGTTGGGA AAATCAAGGC AAATGATGCT GACACTGGCT
961CAAATGCTGA CATGACCTAC TCCATCATAA ATGGTGATGG CATGGGAATA TTCTCAATCT
1021CCACTGACAA AGAGACCAGA GAAGGAATCC TTTCTTTAAA GAAGCCACTG AACTATGAGA
1081AAAAGAAGTC ATATACCCTC AACATAGAAG GAGCAAATAC ACATCTTGAT TTTCGCTTTT
1141CTCACTTGGG TCCTTTTAAA GATGCTACTA TGCTGAAGAT CATTGTTGGG GATGTAGATG
1201AACCACCACT ATTTTCCATG CCTTCCTACC TCATGGAAGT CTACGAAAAT GCCAAGATTG
1261GGACCGTCGT TGGTACAGTT TTGGCACAAG ATCCTGACAG TATTAACAGC TTAGTAAGAT
1321ACTTCATCAA CTACAATGTT GAAGACGACA GATTTTTCAA CATTGATGCC AATACTGGGA
1381CCATTAGGAC TACAAAGGTT CTCGACAGAG AAGAAACTCC ATGGTACAAC ATCACAGTCA
1441CTGCTTCAGA AATTGATAAT CCTGATTTGC TGAGCCATGT CACAGTGGGT ATTAGAGTTC
1501TGGATGTCAA TGACAATCCA CCCGAACTTG CCAGGGAATA TGATATTATT GTATGTGAAA
1561ATTCTAAGCC TGGCCAGGTT ATTCATACCA TCAGTGCCAC TGATAAAGAT GATTTTGCCA
1621ATGGACCAAG GTTTAACTTC TTTCTTGATG AGCGCCTGCC TGTAAATCCA AACTTCACTC
1681TGAAGGACAA TGAAGATAAC ACAGCCAGCA TTCTGACAAG GCGGAGGAGA TTTAGTCGAA
1741CTGTTCAGGA TGTGTATTAT CTGCCCATTA TGATCTCTGA TGGTGGAATC CCCTCTCTCA
1801GCAGCAGCAG CACCCTCACC ATCAGGGTTT GTGCATGCGA GAGAGATGGG CGTGTGCGGA
1861CCTGCCATGC AGAAGCCTTC CTGTCCTCGG CTGGTTTGAG TACAGGAGCC TTAATCGCTA
1921TTCTTCTCTG TGTTCTCATT CTCCTGGCAA TTGTGGTACT TTTTATCACC CTGAGGCGCA
1981GCAAAAAAGA GCCCTTGATC ATTTCAGAAG AGGATGTACG GGAGAACGTG GTCACCTATG
2041ATGATGAAGG AGGCGGAGAG GAAGACACAG GGGCCTTTGA CATCACAGCC TTGAGGAATC
2101CTTCTGCTGC TGAGGAGCTC AAGTACCGGA GGGATATCAG ACCTGAAGTG AAGCTCACTC
2161CCAGACACCA GACATCATCC ACCCTGGAAA GCATAGATGT TCAGGAATTT ATTAAGCAAA
2221GACTGGCAGA AGCAGACCTA GACCCTAGCG TTCCCCCTTA TGACTCTCTT CAGACTTATG
2281CCTATGAGGG TCAGAGATCA GAAGCTGGGT CTATCAGCTC GCTGGATTCA GCAACGACAC
2341AATCAGACCA GGATTATCAC TACCTTGGAG ACTGGGGACC CGAGTTTAAA AAGTTAGCTG
2401AACTCTATGG AGAAATAGAA TCTGAAAGAA CAACTCACCC AACTTTCTTG TACAAAGTtg
2461gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)