Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_06074
- Subject:
- NR_001278.1
- Aligned Length:
- 3000
- Identities:
- 1415
- Gaps:
- 1527
Alignment
Query 1 --------ATGGAACTCAGCGTCCTCCTCTTCCTTGCACTCCTCACAGGACTCTTGCTACTCCTGGTTCAGCGC 66
|||||.|||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.
Sbjct 1 CTGGAACCATGGAGCTCAGCGTCCTCCTCTTCCTTGCACTCCTCACAGGCCTCTTGCTACTCCTGGTTCAGCGT 74
Query 67 CACCCTAACACCCATGACCGCCTCCCACCAGGGCCCCGCCCTCTGCCCCTTTTGGGAAACCTTCTGCAGATGGA 140
|||||||||.||||||.|..||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 75 CACCCTAACTCCCATGGCACCCTCCCACCAGGGCCCCGCCCTCTGCCCCTTTTGGGGAACCTTCTGCAGATGGA 148
Query 141 TAGAAGAGGCCTACTCAAATCCTTTCTGAGGTTCCGAGAGAAATATGGGGACGTCTTCACGGTACACCTGGGAC 214
.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CAGAAGAGGCCTACTCAAATCCTTTCTGAGGTTCCGAGAGAAATATGGGGACGTCTTCACGGTACACCTGGGAC 222
Query 215 CGAGGCCCGTGGTCATGCTGTGTGGAGTAGAGGCCATACGGGAGGCCCTTGTGGACAAGGCTGAGGCCTTCTCT 288
|||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||
Sbjct 223 CGAGGCCCGTGGTCATGCTGTGTGGAGTAGAGGCCATACGGGAGGCCCTGGTGGACAACGCTGAGGCCTTCTCT 296
Query 289 GGCCGGGGAAAAATCGCCATGGTCGACCCATTCTTCCGGGGATATGGTGTGATCTTTGCCAATGGAAACCGCTG 362
||||||||||||||||.|||..|.||||||.|||.||.|||||||||..||.||||||||||||||||||||||
Sbjct 297 GGCCGGGGAAAAATCGTCATCATGGACCCAGTCTACCAGGGATATGGCATGCTCTTTGCCAATGGAAACCGCTG 370
Query 363 GAAGGTGCTTCGGCGATTCTCTGTGACCACTATGAGGGACTTCGGGATGGGAAAGCGGAGTGTGGAGGAGCGGA 436
||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAAGGTGCTTCGGCGATTCTCTGTGACCACCATGAGGGACTTCGGGATGGGAAAGCGGAGTGTGGAGGAGCGGA 444
Query 437 TTCAGGAGGAGGCTCAGTGTCTGATAGAGGAGCTTCGGAAATCCAAGGGGGCCCTCATGGACCCCACCTTCCTC 510
|||||||.|||||||||||||||||||||||.|||||||||||||||||.||||||.|||||||||||||||||
Sbjct 445 TTCAGGACGAGGCTCAGTGTCTGATAGAGGAACTTCGGAAATCCAAGGGAGCCCTCGTGGACCCCACCTTCCTC 518
Query 511 TTCCATTCCATTACCGCCAACATCATCTGCTCCATCGTCTTTGGAAAACGATTCCACTACCAAGATCAAGAGTT 584
||||||||||||||||||||||||||||||||||||.|||||||||||||.|||||||||||||||||||||||
Sbjct 519 TTCCATTCCATTACCGCCAACATCATCTGCTCCATCATCTTTGGAAAACGCTTCCACTACCAAGATCAAGAGTT 592
Query 585 CCTGAAGATGCTGAACTTGTTCTACCAGACTTTTTCACTCATCAGCTCTGTATTCGGCCAGCTGTTTGAGCTCT 658
||||||||.||||||||||||||.|||||.|||.|.|||||||||||||.|||.|.||||||||||||||||||
Sbjct 593 CCTGAAGACGCTGAACTTGTTCTGCCAGAGTTTCTTACTCATCAGCTCTATATCCAGCCAGCTGTTTGAGCTCT 666
Query 659 TCTCTGGCTTCTTGAAATACTTTCCTGGGGCACACAGGCAAGTTTACAAAAACCTACAGGAAATCAATGCTTAC 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCTCTGGCTTCTTGAAATACTTTCCTGGGGCACACAGGCAAGTTTACAAAAACCTACAGGAAATCAATGCTTAC 740
Query 733 ATTGGCCACAGTGTGGAGAAGCACCGTGAAACCCTGGACCCCAGCGCCCCCAGGGACCTCATCGACACCTACCT 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATTGGCCACAGTGTGGAGAAGCACCGTGAAACCCTGGACCCCAGCGCCCCCAGGGACCTCATCGACACCTACCT 814
Query 807 GCTCCACATGGAAAAAGAGAAATCCAACGCACACAGTGAATTCAGCCACCAGAACCTCAACCTCAACACGCTCT 880
||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||.|.||||||||||||
Sbjct 815 GCTCCACATGGAAAAAGAGAAATCCAACCCACACAGTGAATTCAGCCACCAGAACCTCATCATCAACACGCTCT 888
Query 881 CGCTCTTCTTTGCTGGCACTGAGACCACCAGCACCACTCTCCGCTACGGCTTCCTGCTCATGCTCAAATACCCT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CGCTCTTCTTTGCTGGCACTGAGACCACCAGCACCACTCTCCGCTACGGCTTCCTGCTCATGCTCAAATACCCT 962
Query 955 CATGTTGCAGAGAGAGTCTACAGGGAGATTGAACAGGTGATTGGCCCACATCGCCCTCCAGAGCTTCATGACCG 1028
|||||.||||||||||||||||.||||||||||||||||.|||||||||||||||||||||.||||.|||||||
Sbjct 963 CATGTCGCAGAGAGAGTCTACAAGGAGATTGAACAGGTGGTTGGCCCACATCGCCCTCCAGCGCTTGATGACCG 1036
Query 1029 AGCCAAAATGCCATACACAGAGGCAGTCATCTATGAGATTCAGAGATTTTCCGACCTTCTCCCCATGGGTGTGC 1102
|||||||||||||||||||||||||||||||..||||||||||||||||.|.||||||||||||||||||||||
Sbjct 1037 AGCCAAAATGCCATACACAGAGGCAGTCATCCGTGAGATTCAGAGATTTGCTGACCTTCTCCCCATGGGTGTGC 1110
Query 1103 CCCACATTGTCACCCAACACACCAGCTTCCGAGGGTACATCATCCCCAAGGACACAGAAGTATTTCTCATCCTG 1176
|||||||||||||||||||||||||||||.|||||||||.|||||||||||||||.||||||||||||||||||
Sbjct 1111 CCCACATTGTCACCCAACACACCAGCTTCTGAGGGTACACCATCCCCAAGGACACGGAAGTATTTCTCATCCTG 1184
Query 1177 AGCACTGCTCTCCATGACCCACACTACTTTGAAAAACCAGACGCCTTCAATCCTGACCACTTTCTGGATGCCAA 1250
|||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGCACTGCTCTCCGTGACCCACACTACTTTGAAAAACCAGACGCCTTCAATCCTGACCACTTTCTGGATGCCAA 1258
Query 1251 TGGGGCACTGAAAAAGACTGAAGCTTTTATCCCCTTCTCCTTAGGGAAGCGGATTTGTCTTGGTGAAGGCATCG 1324
|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 1259 TGGGGCACTGAAAAAGAATGAAGCTTTTATCCCCTTCTCCTTAGGGAAGCGGATTTGTCTTGGTGAAGGCATTG 1332
Query 1325 CCCGTGCGGAATTGTTCCTCTTCTTCACCACCATCCTCCAGAACTTCTCCATGGCCAGCCCCGTGGCCCCAGAA 1398
||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||.||.|||
Sbjct 1333 CCCGTGCGGAATTGTTCCTCTTCTTCACCACCATCCTCCAGAACTTCTCCGTGGCCAGCCCCGTGGCTCCTGAA 1406
Query 1399 GACATCGATCTGACACCCCAGGAGTGTGGTGTGGGCAAAATACCCCCAACATACCAGATCCGCTTCCTGCCCCG 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 1407 GACATCGATCTGACACCCCAGGAGTGTGGTGTGGGCAAAATACCCCCAACATACCAGATCTGCTTCCTGCCCCG 1480
Query 1473 C------------------------------------------------------------------------- 1473
|
Sbjct 1481 CTGAAGGGGCTGAGGGAAGGGGGTCAAAGGATTCCAGGGTCATTCAGTGTCCCCACCTCTGTAGATAATGGCTC 1554
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 1555 TGACTCCCTGCAACTTCCTGCCTCTGAGAGACCTGCTGCAAGCCAGCTTCCTTCCCTTCCATGGCACCAGTTGT 1628
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 1629 CTGAGGTCGCAGTGCAAATGAGTGGAGGAGTGAGATTATTGAAAATTATAATATACAAAATTATATATATATAT 1702
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 1703 TTTGAGACAGAGTCTCACTCAGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCCACC 1776
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 1777 CCCGGGGTTCAAGAAATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGTGTGTGCTACCATGCCTGG 1850
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 1851 CTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTGGCCAGGCTGATCTCAAACTCCTGAACTCAAG 1924
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 1925 TGATTCACCCACCTTAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGTCACCATGCCCGGCCATGTATATATA 1998
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 1999 TAATTTTAAAAATTAAGATGAAATTCACATAAAATAAAATTAGCCATTTTAAAGTGTACAATTTAGTGGTGTGT 2072
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 2073 GGTTCATTCACAAAGCTGTACAACCACCACCATCTAGTTCCAAACATTTTCTTTTTTTCTGAGACGGAGTCTCA 2146
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 2147 CTCTGTCACCCAGGTTCGAGTTCAGTGGTCTTGAACTCCTGATGTCAGGTGATTCTCCTAGTTCCAAATGTTTT 2220
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 2221 CATTATCTCCCCCCAACAAAACCCATACCTATCAAGCTGTCACTCCCCATACCCCATTCTCTTTTTCATCTCAG 2294
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 2295 CCCCTGTCAATCTGGTTTTTGTCCTTATGGACTTACCAATTCTGAATATTTCCTATAAACAGAATCACACAATA 2368
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 2369 TTTGATTTTTTTTTTAAAACTAAGCCTTGCTCTGTCTCCCAGGCTGGAGTGCTGTGGCGTGATTTTGGTTCACT 2442
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 2443 GCAACCTCCGCCTTCCAAGTTCAAGAGATTCTCCTGCCTCAGCTTCCAAGTAGCTGGGATTACAGGCATGTGGT 2516
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 2517 ACCACGCCTGGCTAATTTTCTTGTATTTTTAGTAGGGACATGTTGGCCAGGCTGGTTGTGAGCTCCTGGCCTCA 2590
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 2591 GGTGATCCACACGCCTCAGTGTCCCAGAGTGCTGATATTACAGGCGTAATATGTGATCTTTTGTGTCTGGTTCC 2664
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 2665 TTTCACGTTGAACGCTATTTTTGAGGTTCGTGCCTGTTGTAGACCACAGTCACACACTGCTGTAGTCTTCCCCC 2738
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 2739 ATCCTCATTCCCAGCTGCCTCCTCCTACTGTTTCCCTCTATCAAAAAGCCTCCTTGGCGCAGGTTCCCTGAGCT 2812
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 2813 GTGGGATTCTGCACTGGTGCTTTGGATTCCCTGATATGTTCCTTCAAATCCACTGAGAATTAAATAAACATCGC 2886
Query 1474 -------------------------------------------------------------------------- 1473
Sbjct 2887 TAAAGCATGACCTCCCCACGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2960
Query 1474 ---------------------------------------- 1473
Sbjct 2961 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3000
