Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_06177
- Subject:
- XR_001779457.1
- Aligned Length:
- 2698
- Identities:
- 1478
- Gaps:
- 1046
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGGCCTCGGTGGCCAGCGCCAGGCGGGGTGGGGGCGGGGTGAGGCGGCGCAGAGGGCGCGGAGATTACCGCGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCCACCAGAGACGCGCAGAGCCGGGGAGCCCCGGAGGTCCCCCCACGCGAGACCTCAAAAAAGAAAAAAAAAGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGATGATAACAGGCAGTTTCCAGAGATCGAATAAAAAGAGAGGGCTTCTGCGCCCGCCAAGATCTCCTGCTCTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCGGCGGCCTGCCGGGAGGCCCCCAGCGGCCACCCTAGCCCCAGGACGCAGGCGGCGACGTCCCCCCCCAACCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCCCACATCCCGCCTCCTGCCTCTAGGCTCCAGCTCCGCGCGCTAGGGAGAGGCTGCCCGCGGCGCGGCGCACG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTCCGGCGGCTCCCGGCTTGCGCGCAAACCTTTCCCGGTCGGCGCCCTAGAGAGGGGACTGAGCGGCGGGGACC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGCGGAGGGACGCCCGGCCACCCGGCGCGCGCGCGCTTTCTCTTTTCTTCTGCTCGCTAACGCCGCTCGGCTGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCGGACTTTGGTTCGGCTCCTTTCGTCCTCCCCCCCCCCCCCTCGCAGCCGGCTCCCCCACCCCGCCCTGTTTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCCCCCACTTGTGTAAGCTATTTGTTGGGGGTGGCCGAAAGGGATGTCCTGTTTTTACCAGAGACACAGCGCGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGGGAAAACTTAGACACTGGAAGGAAAGCGAGTAAATACGTAGATCGGACCCGCAGATCACTGGCTGGGACAGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAATTGAACTTCGGGAGTCCAAGGCGGTCCGGGCCGCCAGAGATAGTCAAGTTTGAATCCAAGGAAGCTGCTTC 814
Query 1 ----------------------------------ATGGAAGACTCCCAGGATTTAAATGAACAATCAGTAAAGA 40
|||||||||.|||||||..|||||||.|||||.|||||||
Sbjct 815 TGCGTGGCAGTGGCAAGAGAAGTTAGAGAACCACATGGAAGACACCCAGGACCTAAATGAGCAATCTGTAAAGA 888
Query 41 AAACGTGCACAGAATCAGATGTTTCACAATCTCAGAATTCCAGGTCTATGGAAATGCAGGACCTAGCAAGTCCT 114
||||||||.|||||.||||||||||..||.||||||||||||||||||||||||||||.||||||||||||||.
Sbjct 889 AAACGTGCCCAGAAGCAGATGTTTCGGAACCTCAGAATTCCAGGTCTATGGAAATGCAAGACCTAGCAAGTCCC 962
Query 115 CATACTCTT-GTTGGAGGTGGTGATACTCCAGGTAGCTCCAAACTGGAAAAATCTAATCTCAGCAGCACATCAG 187
|||.| ||| ||||||||..|||||||.||.||.||||||||.|||||.||||||..||||||||||||.||||
Sbjct 963 CATGC-CTTGGTTGGAGGCAGTGATACACCTGGGAGCTCCAAGCTGGATAAATCTGGTCTCAGCAGCACTTCAG 1035
Query 188 TTACTACAAATGGGACAGGAGTGTCTCTTCTTGCAGTCAAAACAGAGCCCTTGAACAGCAGTGAAACCACAGCC 261
|.||.||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||..||||..||
Sbjct 1036 TCACAACAAATGGGACAGGAGTGTCTCTTCTTGCAGTCAAAACAGAGCCCTTGCACAGCAGTGAGTCCACTACC 1109
Query 262 ACGACTGGAGATGGAGCGCTTGACACTTTTACTGGGTCAGTAATTACAAGTAGTGGCTACAGCCCCAGATCAGC 335
||||||||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||.||.||
Sbjct 1110 ACGACTGGAGATGGAGCGCTTGACACTTTTACTGGGTCAGTAATAACAAGCAGCGGCTACAGCCCCAGGTCGGC 1183
Query 336 ACATCAGTATTCCCCACAGCTGTATCCTTCCAAGCCCTATCCACACATTCTTTCTACACCAGCAGCTCAAACAA 409
.||.|||||.||.|||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 GCAGCAGTACTCTCCACAGCTGTACCCCTCCAAGCCCTATCCACACATTCTTTCTACACCAGCAGCTCAAACAA 1257
Query 410 TGTCTGCCTATGCAGGCCAGACTCAGTATTCGGGGATGCAGCAGCCAGCCGTCTACACAGCCTACTCACAGACA 483
||||.|||||||||||||||||||||||.||.||||||||||||||.||||||||||||||||||||.||||||
Sbjct 1258 TGTCGGCCTATGCAGGCCAGACTCAGTACTCTGGGATGCAGCAGCCGGCCGTCTACACAGCCTACTCGCAGACA 1331
Query 484 GGACAGCCCTACAGCTTGCCCACTTACGATTTGGGTGTGATGTTGCCAGCCATCAAGACAGAGAGTGGACTTTC 557
|||||||||||||||.||||..|.||||||.|.||||||||||||||||||||||||||.||.|||||.|||||
Sbjct 1332 GGACAGCCCTACAGCCTGCCTGCCTACGATCTTGGTGTGATGTTGCCAGCCATCAAGACGGAAAGTGGGCTTTC 1405
Query 558 CCAAACTCAGTCCCCATTACAGAGTGGCTGCCTCAGTTACAGCCCAGGGTTCTCTACCCCACAGCCAGGCCAGA 631
|||||||||||||||.|||||||||||||||||.||.||||||||.|||||.||||||||||||||||||||||
Sbjct 1406 CCAAACTCAGTCCCCGTTACAGAGTGGCTGCCTGAGCTACAGCCCTGGGTTTTCTACCCCACAGCCAGGCCAGA 1479
Query 632 CACCTTATTCTTACCAAATGCCAGGTTCTAGTTTTGCACCATCATCTACTATTTATGCAAATAATTCAGTTTCC 705
|.|||||.||||||||||||||||||||.||.|||||||||||.|||||||||||||||||||||||.|||||.
Sbjct 1480 CGCCTTACTCTTACCAAATGCCAGGTTCCAGCTTTGCACCATCGTCTACTATTTATGCAAATAATTCCGTTTCT 1553
Query 706 AATTCAACAAATTTCAGTGGTTCACAACAGGATTATCCATCCTATACAGCCTTTGGCCAAAACCAGTATGCACA 779
|||||||||||.|||||..|.|||||.||||||||.||||||||.||||||||||||||||||||.|||||.||
Sbjct 1554 AATTCAACAAACTTCAGCAGCTCACAGCAGGATTACCCATCCTACACAGCCTTTGGCCAAAACCAATATGCTCA 1627
Query 780 GTATTATTCAGCATCAACGTATGGAGCGTATATGACATCGAATAACACAGCCGATGGCACACCCTCTTCAACCT 853
||||||.|||||||||||.|||||.||.||.||||||||.||.||||||||.||.||||||.|.||.|||||.|
Sbjct 1628 GTATTACTCAGCATCAACCTATGGGGCATACATGACATCAAACAACACAGCTGACGGCACATCATCGTCAACAT 1701
Query 854 CTACTTATCAGTTGCAGGAATCTCTCCCAGGACTGACTAACCAACCAGGAGAGTTCGATACCATGCAGAGTCCC 927
|.|||||||||.|||||||||||||||.|||||||||||.|||||||||||||||.|||||..|||||||||||
Sbjct 1702 CAACTTATCAGCTGCAGGAATCTCTCCAAGGACTGACTAGCCAACCAGGAGAGTTTGATACAGTGCAGAGTCCC 1775
Query 928 TCCACACCCATCAAAGATCTTGATGAGAGAACCTGTAGGAGTTCTGGGTCAAAGTCCAGAGGAAGAGGCCGGAA 1001
||||||||.|||||||||||.|||||.|||||.|||||.|||||||||||||||||..||||||||||||||||
Sbjct 1776 TCCACACCAATCAAAGATCTCGATGACAGAACATGTAGAAGTTCTGGGTCAAAGTCTCGAGGAAGAGGCCGGAA 1849
Query 1002 AAATAATCCCTCCCCGCCTCCTGATAGTGACCTGGAGCGTGTGTTTGTCTGGGATTTGGATGAAACCATCATTG 1075
|||||||||||||||.|||||.||.||||||||.||||||||||||||||||||.|||||||||||||||||.|
Sbjct 1850 AAATAATCCCTCCCCACCTCCGGACAGTGACCTAGAGCGTGTGTTTGTCTGGGACTTGGATGAAACCATCATCG 1923
Query 1076 TTTTTCACTCACTGCTCACCGGGTCTTATGCACAGAAGTATGGCAAGGATCCCCCCATGGCTGTAACCCTTGGA 1149
|.||.|||||.||.|||||.||.||||||||||||||||||||||||||||||||.||||||||.||.||.||.
Sbjct 1924 TCTTCCACTCTCTCCTCACGGGCTCTTATGCACAGAAGTATGGCAAGGATCCCCCAATGGCTGTGACTCTCGGG 1997
Query 1150 CTCCGCATGGAAGAAATGATTTTTAATCTTGCTGATACTCATTTGTTTTTTAATGATTTAGAGGAGTGTGATCA 1223
|||||.||||||||||||||.|||||||||||.|||||.|||||||||||||||||.|||||||||||||||||
Sbjct 1998 CTCCGGATGGAAGAAATGATCTTTAATCTTGCAGATACACATTTGTTTTTTAATGACTTAGAGGAGTGTGATCA 2071
Query 1224 AGTTCATATAGATGATGTTTCCTCTGATGATAATGGGCAGGACTTAAGTACCTACAGTTTTGCAACTGATGGCT 1297
||||||||||||||||||||||||.||.||.|||||.|||||||||
Sbjct 2072 AGTTCATATAGATGATGTTTCCTCCGACGACAATGGTCAGGACTTA---------------------------- 2117
Query 1298 TCCATGCAGCTGCAAGTAGTGCAAACCTTTGTTTGCCAACAGGTGTAAGAGGAGGGGTTGACTGGATGAGGAAG 1371
||||||.||||||||.||.|||||||||||||||
Sbjct 2118 ----------------------------------------AGGTGTGAGAGGAGGAGTGGACTGGATGAGGAAG 2151
Query 1372 TTGGCTTTTCGTTACAGAAGAGTAAAAGAATTATATAACACCTACAAGAACAACGTTGGAGGACTCCTTGGCCC 1445
.|||||||||||||||||||||||||.||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 2152 CTGGCTTTTCGTTACAGAAGAGTAAAGGAATTATATAACACCTACAAGAACAATGTTGGAGGACTCCTTGGCCC 2225
Query 1446 TGCCAAGAGGGATGCCTGGCTACAGTTAAGGGCAGAGATTGAAGGTCTGACAGATTCCTGGCTAACAAATGCAC 1519
|||.|||||||||||.|||||.|||||||||||||||||.|||||.||.|||||||||||||||||.|||||||
Sbjct 2226 TGCTAAGAGGGATGCATGGCTGCAGTTAAGGGCAGAGATCGAAGGCCTAACAGATTCCTGGCTAACGAATGCAC 2299
Query 1520 TTAAGTCTTTATCAATTATTAGCACTAGGAGTAACTGCATAAATGTCTTGGTAACGACAACTCAACTGATCCCA 1593
||||||||||||||||||||||.||||||||||||||..||||||||||||||||||||||.||.|||||.||.
Sbjct 2300 TTAAGTCTTTATCAATTATTAGTACTAGGAGTAACTGTGTAAATGTCTTGGTAACGACAACCCAGCTGATTCCT 2373
Query 1594 GCACTTGCGAAGGTTCTACTCTATAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGCAACTAAAAT 1667
||.|||||.||.||.||.|||||.||..|||||||||||||||||||||||||.||||||||.|||||.|||||
Sbjct 2374 GCTCTTGCAAAAGTCCTGCTCTACAGCCTAGGAGGTGCTTTCCCCATTGAGAACATTTACAGCGCAACGAAAAT 2447
Query 1668 AGGAAAAGAAAGTTGCTTTGAACGAATAATGCAAAGGTTTGGCA-GAAAAGTAGTGTATGTTGTAATTGGGGAT 1740
|||.||.|||||.||.|||||.||.|||.||...||.||||||| .||.| |||.|
Sbjct 2448 AGGCAAGGAAAGCTGTTTTGAGCGTATAGTGTCCAGATTTGGCACTAACA-------------TAACT------ 2502
Query 1741 GGTGTAGAAGAAGAACAGGCAGCAAAAAAGCACAACATGCCCTTCTGGAGGATATCCAGTCACTCAGACCTCCT 1814
Sbjct 2503 -------------------------------------------------------------------------- 2502
Query 1815 GGCTCTCCACCAAGCACTGGAATTAGAGTATTTG 1848
Sbjct 2503 ---------------------------------- 2502
