Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_06700
Subject:
NM_001159952.1
Aligned Length:
1903
Identities:
1654
Gaps:
38

Alignment

Query    1  ATGGAGTCGCCAACAAAGGAGATTGAAGAATTTGAGAGCAACTCTCTGAAATACCTGCAACCGGAACAGATCGA  74
            ||||||||.|||||.|||||.|||||||||||.||||||||||||||||||.||||||||||.||.||||||||
Sbjct    1  ATGGAGTCTCCAACCAAGGAAATTGAAGAATTCGAGAGCAACTCTCTGAAACACCTGCAACCTGAGCAGATCGA  74

Query   75  GAAAATCTGGCTTCGGCTCCGCGGGCTGAGGAAATATAAGAAAACGTCCCAGAGATTACGGTCTTTGGTCAAAC  148
            ||||||||||||||||||||||||||||                           |||||||||||||||||.|
Sbjct   75  GAAAATCTGGCTTCGGCTCCGCGGGCTG---------------------------TTACGGTCTTTGGTCAAGC  121

Query  149  AATTAGAGAGAGGGGAAGCTTCAGTGGTAGATCTTAAGAAGAATTTGGAATATGCAGCCACAGTGCTTGAATCT  222
            |||||||..||||.||.||.||.||||||||.||||||||||||.|||||||||||||||||||||||||||||
Sbjct  122  AATTAGAACGAGGAGAGGCCTCTGTGGTAGACCTTAAGAAGAATCTGGAATATGCAGCCACAGTGCTTGAATCT  195

Query  223  GTGTATATTGATGAAACAAGGAGACTCCTGGATACAGAGGATGAGCTCAGTGACATTCAGTCAGATGCTGTGCC  296
            ||.||||||||||||||||||.||||.||||||||||||||||||||.|||||||||||.||||||||||||||
Sbjct  196  GTATATATTGATGAAACAAGGCGACTGCTGGATACAGAGGATGAGCTTAGTGACATTCAATCAGATGCTGTGCC  269

Query  297  TTCTGAGGTCCGAGACTGGCTGGCCTCCACCTTCACGCGGCAGATGGGGATGATGCTCAGGAGGAGCGACGAGA  370
            |||.||.||.||.||.||||||||||||||||||||.||||||||||||||||||||.|||||.||.||.||||
Sbjct  270  TTCAGAAGTTCGGGATTGGCTGGCCTCCACCTTCACACGGCAGATGGGGATGATGCTTAGGAGAAGTGATGAGA  343

Query  371  AGCCCCGGTTCAAGAGCATCGTTCACGCAGTGCAGGCTGGGATATTTGTGGAGAGAATGTATAGACGGACATCA  444
            |||||.||||||||||||||||.||.||.|||||.|||||||||||||||||.||||||||.||||||||||||
Sbjct  344  AGCCCAGGTTCAAGAGCATCGTCCATGCGGTGCAAGCTGGGATATTTGTGGAAAGAATGTACAGACGGACATCA  417

Query  445  AACATGGTTGGACTGAGCTATCCACCAGCTGTTATTGAGGCATTAAAGGATGTGGACAAGTGGTCATTTGACGT  518
            |||||||||||.||||||||||||||.|||||.||.||.|||||.|||||||||||.|.||||||.||.||.||
Sbjct  418  AACATGGTTGGGCTGAGCTATCCACCGGCTGTAATCGATGCATTGAAGGATGTGGATACGTGGTCCTTCGATGT  491

Query  519  CTTTTCCCTCAATGAGGCCAGTGGGGATCATGCACTGAAATTTATTTTCTATGAACTACTCACACGTTATGATC  592
            ||||||||||||||||||||||||.||||||||||||||.||.||||||||||||.||||||||||||||||.|
Sbjct  492  CTTTTCCCTCAATGAGGCCAGTGGAGATCATGCACTGAAGTTCATTTTCTATGAATTACTCACACGTTATGACC  565

Query  593  TGATCAGCCGTTTCAAGATCCCCATTTCTGCACTTGTCTCATTTGTGGAGGCCCTGGAAGTGGGATACAGCAAG  666
            |||||||||||||.|||||.||.||||||||||||||||||||||||||||||||.||||||||.|||||||||
Sbjct  566  TGATCAGCCGTTTTAAGATACCGATTTCTGCACTTGTCTCATTTGTGGAGGCCCTCGAAGTGGGTTACAGCAAG  639

Query  667  CACAAAAATCCTTACCATAACTTAATGCACGCTGCCGATGTTACACAGACAGTGCATTACCTCCTCTATAAGAC  740
            |||||||||||||||||||||.|.|||||.||.||.||.||.||||||||.||||||||||||||.||||||||
Sbjct  640  CACAAAAATCCTTACCATAACCTGATGCATGCAGCTGACGTCACACAGACTGTGCATTACCTCCTTTATAAGAC  713

Query  741  AGGAGTGGCGAACTGGCTGACGGAGCTGGAGATCTTTGCTATAATCTTCTCAGCTGCCATCCATGACTACGAGC  814
            ||||||.||.|||||||||||.|||||||||||||||||.||||||||.||.|||||||||||||||||.||.|
Sbjct  714  AGGAGTAGCAAACTGGCTGACAGAGCTGGAGATCTTTGCAATAATCTTTTCGGCTGCCATCCATGACTATGAAC  787

Query  815  ATACCGGAACCACCAACAATTTCCACATTCAGACTCGGTCTGATCCAGCTATTCTGTATAATGACAGATCTGTA  888
            ||||.|||||.||.||||||||||||||||||||||||||.|||||||||||.|||||.||||||||||||||.
Sbjct  788  ATACTGGAACTACAAACAATTTCCACATTCAGACTCGGTCAGATCCAGCTATCCTGTACAATGACAGATCTGTC  861

Query  889  CTGGAGAATCACCATTTAAGTGCAGCTTATCGCCTTCTGCAAGATGACGAGGAAATGAATATTTTGATTAACCT  962
            ||||||||.|||||..|.||||||||.||.|||||||||||.||.|||||.||.|||||||||.||.|||||||
Sbjct  862  CTGGAGAACCACCACCTGAGTGCAGCCTACCGCCTTCTGCAGGAAGACGAAGAGATGAATATTCTGGTTAACCT  935

Query  963  CTCAAAGGATGACTGGAGGGAGTTTCGAACCTTGGTAATTGAAATGGTGATGGCCACAGATATGTCTTGTCACT  1036
            ||||||||||||||||||||||||||||||.|||||.|||||.|||||.|||||||||||||||||.|||||.|
Sbjct  936  CTCAAAGGATGACTGGAGGGAGTTTCGAACTTTGGTTATTGAGATGGTAATGGCCACAGATATGTCCTGTCATT  1009

Query 1037  TCCAACAAATCAAAGCAATGAAGACTGCTCTGCAGCAGCCAGAAGCCATTGAAAAGCCAAAAGCCTTATCCCTT  1110
            ||||.|||||||||||.||||||||.||.||||||||.||||||||.|||||.|||||.||||||||||||||.
Sbjct 1010  TCCAGCAAATCAAAGCCATGAAGACAGCCCTGCAGCAACCAGAAGCAATTGAGAAGCCGAAAGCCTTATCCCTC  1083

Query 1111  ATGCTGCATACAGCAGATATTAGCCATCCAGCAAAAGCATGGGACCTCCATCATCGCTGGACAATGTCACTCCT  1184
            |||.|.||.||||||||.||.||.|||||.||.||||||||||||||.||.||.||||||||.|||||.|||||
Sbjct 1084  ATGTTACACACAGCAGACATCAGTCATCCTGCGAAAGCATGGGACCTGCACCACCGCTGGACCATGTCTCTCCT  1157

Query 1185  GGAGGAGTTCTTCAGACAGGGTGACAGAGAAGCAGAGCTGGGGCTGCCTTTTTCTCCTCTGTGTGACCGAAAGT  1258
            ||||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||.||||||.||||||
Sbjct 1158  GGAGGAGTTCTTTAGACAGGGTGACAGAGAAGCAGAGCTGGGGCTGCCATTTTCTCCTCTTTGTGACAGAAAGT  1231

Query 1259  CCACTATGGTTGCTCAGTCACAAGTAGGTTTCATTGATTTCATCGTGGAACCCACCTTCACTGTGCTTACGGAC  1332
            |.||.||||||||||||||||||||.|||||.|||||.|||||.|||||.|||||||||||||||||.||||||
Sbjct 1232  CAACCATGGTTGCTCAGTCACAAGTGGGTTTTATTGACTTCATTGTGGAGCCCACCTTCACTGTGCTCACGGAC  1305

Query 1333  ATGACCGAGAAGATTGTGAGTCCATTAATCGATGAAACCTCTCAAACTGGTGGGACAGGACAGAGGCGTTCGAG  1406
            |||||||||||||||||||||||||||||.||.||||.|||.||.||||||||||||||.||||||.|.||.||
Sbjct 1306  ATGACCGAGAAGATTGTGAGTCCATTAATTGACGAAAGCTCCCAGACTGGTGGGACAGGGCAGAGGAGATCAAG  1379

Query 1407  TTTGAATAGCATCAGCTCGTCAGATGCCAAGCGATCAGGTGTCAAGACCTCTGGTTCAGAGGGAAGTGCCCCGA  1480
            ||||||.|||||||.|||.||||||||.||||||||.||||||||||..|||||.|||||.||||||||.||.|
Sbjct 1380  TTTGAACAGCATCAACTCATCAGATGCAAAGCGATCCGGTGTCAAGAGTTCTGGGTCAGATGGAAGTGCTCCCA  1453

Query 1481  TCAACAATTCTGTCATCTCC-GTTGACTATAAGAGCTTTAAAGCTACTTGGACGGAAGTGGTGCACATCAATCG  1553
            |||||||||||||||| ||| ||||||||||||||.||||||||.||||||||.||.||||||||.||||||||
Sbjct 1454  TCAACAATTCTGTCAT-TCCTGTTGACTATAAGAGTTTTAAAGCCACTTGGACTGAGGTGGTGCAGATCAATCG  1526

Query 1554  GGAGAGATGGAGGGCCAAGGTACCCAAAGAGGAGAAGGCCAAGAAGGAAGCAGAGGAAAAGGCTCGCATGGCCG  1627
            ||||.|.|||.|.|||||||||||||||||.||.||.||||||||||||||.||.||.|||||||||.||||.|
Sbjct 1527  GGAGCGGTGGCGAGCCAAGGTACCCAAAGAAGAAAAAGCCAAGAAGGAAGCTGAAGAGAAGGCTCGCCTGGCTG  1600

Query 1628  CAGAGGAGCAGCAAAAGGAAATGGAAGCCAAAAGCCAGGCTGAAGAAGGCGCATCTGGCAAAGCTGAGAAAAAG  1701
            |.|||||..||||||||||||||||||||||||||||.||||||.|||||.||.|..||||||..|||||||||
Sbjct 1601  CTGAGGAAAAGCAAAAGGAAATGGAAGCCAAAAGCCAAGCTGAACAAGGCACAACCAGCAAAGGCGAGAAAAAG  1674

Query 1702  ACGTCTGGAGAAACTAAGAATCAAGTCAATGGAACACGGGCAAACAAAAGTGACAACCCTCGTGGGAAAAATTC  1775
            ||.||.||||||.|.||.|.||||||||||||||||||      |||..||||.||||||||||||||.||.||
Sbjct 1675  ACATCAGGAGAAGCCAAAAGTCAAGTCAATGGAACACG------CAAGGGTGATAACCCTCGTGGGAAGAACTC  1742

Query 1776  CAAAGCCGAGAAGTCATCAGGAGAACAGCAACAGAATGGTGACTTCAAAGATGGTAAAAATAAGACAGACAAGA  1849
            |||||..||.|||   .||||.|||.||||.|||||.||||||||.|||||.||||||||||||.|||||||||
Sbjct 1743  CAAAGGAGAAAAG---GCAGGCGAAAAGCAGCAGAACGGTGACTTGAAAGACGGTAAAAATAAGGCAGACAAGA  1813

Query 1850  AGGATCACTCTAACATCGGAAATGATTCAAAGAAAACAGATGATTCACAAGAG  1902
            ||||||||||.||||.|||||||||.||||||||||||||||||.||.|.|||
Sbjct 1814  AGGATCACTCCAACACCGGAAATGAGTCAAAGAAAACAGATGATCCAGAGGAG  1866

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