Construct: ORF ccsbBroadEn_06700

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003417.1_s300c1, BRDN0000393263
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PDE1C (5137)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5137 PDE1C phosphodiesterase 1C NM_001191056.3 99.7% 99.8% (many diffs)
2 human 5137 PDE1C phosphodiesterase 1C NM_001322056.1 99.7% 99.8% (many diffs)
3 human 5137 PDE1C phosphodiesterase 1C NM_001322057.1 99.7% 99.8% (many diffs)
4 human 5137 PDE1C phosphodiesterase 1C NM_005020.5 99.7% 99.8% (many diffs)
5 human 5137 PDE1C phosphodiesterase 1C NM_001322058.2 89.3% 85.1% (many diffs)
6 human 5137 PDE1C phosphodiesterase 1C NM_001191057.4 88.9% 88.7% (many diffs)
7 human 5137 PDE1C phosphodiesterase 1C NM_001191059.3 88.9% 88.7% (many diffs)
8 human 5137 PDE1C phosphodiesterase 1C NM_001322055.1 88.9% 88.7% (many diffs)
9 human 5137 PDE1C phosphodiesterase 1C XM_017012267.1 88.9% 88.7% (many diffs)
10 human 5137 PDE1C phosphodiesterase 1C XM_017012266.1 85.1% 81.1% (many diffs)
11 human 5137 PDE1C phosphodiesterase 1C XM_017012265.1 82.4% 78.4% (many diffs)
12 human 5137 PDE1C phosphodiesterase 1C NM_001322059.1 80.6% 76.9% (many diffs)
13 human 5137 PDE1C phosphodiesterase 1C NM_001191058.4 80.4% 76.4% (many diffs)
14 human 5137 PDE1C phosphodiesterase 1C XM_017012264.1 77% 73.1% (many diffs)
15 human 5137 PDE1C phosphodiesterase 1C XR_001744802.1 63.5% (many diffs)
16 human 5137 PDE1C phosphodiesterase 1C XR_001744803.1 61.5% (many diffs)
17 human 5137 PDE1C phosphodiesterase 1C XR_001744804.1 32.9% (many diffs)
18 human 5137 PDE1C phosphodiesterase 1C XR_002956451.1 25.7% (many diffs)
19 human 5137 PDE1C phosphodiesterase 1C XR_001744806.1 20.3% (many diffs)
20 human 5137 PDE1C phosphodiesterase 1C XR_001744805.1 18.7% (many diffs)
21 mouse 18575 Pde1c phosphodiesterase 1C NM_001025568.2 88.2% 94.7% (many diffs)
22 mouse 18575 Pde1c phosphodiesterase 1C NM_001159960.1 88.2% 94.7% (many diffs)
23 mouse 18575 Pde1c phosphodiesterase 1C XM_017321454.1 88.2% 94.7% (many diffs)
24 mouse 18575 Pde1c phosphodiesterase 1C NM_001159952.1 86.9% 93.3% (many diffs)
25 mouse 18575 Pde1c phosphodiesterase 1C NM_001159955.1 85% 91.1% (many diffs)
26 mouse 18575 Pde1c phosphodiesterase 1C NM_011054.4 85% 91.1% (many diffs)
27 mouse 18575 Pde1c phosphodiesterase 1C XM_011241250.2 85% 91.1% (many diffs)
28 mouse 18575 Pde1c phosphodiesterase 1C XM_017321453.1 85% 91.1% (many diffs)
29 mouse 18575 Pde1c phosphodiesterase 1C NM_001159957.1 83.3% 89.5% (many diffs)
30 mouse 18575 Pde1c phosphodiesterase 1C NM_001159956.1 79.1% 84.9% (many diffs)
31 mouse 18575 Pde1c phosphodiesterase 1C XM_011241251.1 79.1% 84.9% (many diffs)
32 mouse 18575 Pde1c phosphodiesterase 1C NM_001159953.1 78.8% 84.4% (many diffs)
33 mouse 18575 Pde1c phosphodiesterase 1C XM_006505735.2 73.3% 78.7% (many diffs)
34 mouse 18575 Pde1c phosphodiesterase 1C XM_006505734.1 71.5% 72.6% (many diffs)
35 mouse 18575 Pde1c phosphodiesterase 1C XM_006505733.3 69.3% 71% (many diffs)
36 mouse 18575 Pde1c phosphodiesterase 1C XM_006505732.3 67.3% 68.8% (many diffs)
37 mouse 18575 Pde1c phosphodiesterase 1C XM_006505730.3 63.2% 64.7% (many diffs)
38 mouse 18575 Pde1c phosphodiesterase 1C XR_377431.1 47.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1968
ORF length:
1902
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GTCGCCAACA AAGGAGATTG AAGAATTTGA GAGCAACTCT CTGAAATACC
121TGCAACCGGA ACAGATCGAG AAAATCTGGC TTCGGCTCCG CGGGCTGAGG AAATATAAGA
181AAACGTCCCA GAGATTACGG TCTTTGGTCA AACAATTAGA GAGAGGGGAA GCTTCAGTGG
241TAGATCTTAA GAAGAATTTG GAATATGCAG CCACAGTGCT TGAATCTGTG TATATTGATG
301AAACAAGGAG ACTCCTGGAT ACAGAGGATG AGCTCAGTGA CATTCAGTCA GATGCTGTGC
361CTTCTGAGGT CCGAGACTGG CTGGCCTCCA CCTTCACGCG GCAGATGGGG ATGATGCTCA
421GGAGGAGCGA CGAGAAGCCC CGGTTCAAGA GCATCGTTCA CGCAGTGCAG GCTGGGATAT
481TTGTGGAGAG AATGTATAGA CGGACATCAA ACATGGTTGG ACTGAGCTAT CCACCAGCTG
541TTATTGAGGC ATTAAAGGAT GTGGACAAGT GGTCATTTGA CGTCTTTTCC CTCAATGAGG
601CCAGTGGGGA TCATGCACTG AAATTTATTT TCTATGAACT ACTCACACGT TATGATCTGA
661TCAGCCGTTT CAAGATCCCC ATTTCTGCAC TTGTCTCATT TGTGGAGGCC CTGGAAGTGG
721GATACAGCAA GCACAAAAAT CCTTACCATA ACTTAATGCA CGCTGCCGAT GTTACACAGA
781CAGTGCATTA CCTCCTCTAT AAGACAGGAG TGGCGAACTG GCTGACGGAG CTGGAGATCT
841TTGCTATAAT CTTCTCAGCT GCCATCCATG ACTACGAGCA TACCGGAACC ACCAACAATT
901TCCACATTCA GACTCGGTCT GATCCAGCTA TTCTGTATAA TGACAGATCT GTACTGGAGA
961ATCACCATTT AAGTGCAGCT TATCGCCTTC TGCAAGATGA CGAGGAAATG AATATTTTGA
1021TTAACCTCTC AAAGGATGAC TGGAGGGAGT TTCGAACCTT GGTAATTGAA ATGGTGATGG
1081CCACAGATAT GTCTTGTCAC TTCCAACAAA TCAAAGCAAT GAAGACTGCT CTGCAGCAGC
1141CAGAAGCCAT TGAAAAGCCA AAAGCCTTAT CCCTTATGCT GCATACAGCA GATATTAGCC
1201ATCCAGCAAA AGCATGGGAC CTCCATCATC GCTGGACAAT GTCACTCCTG GAGGAGTTCT
1261TCAGACAGGG TGACAGAGAA GCAGAGCTGG GGCTGCCTTT TTCTCCTCTG TGTGACCGAA
1321AGTCCACTAT GGTTGCTCAG TCACAAGTAG GTTTCATTGA TTTCATCGTG GAACCCACCT
1381TCACTGTGCT TACGGACATG ACCGAGAAGA TTGTGAGTCC ATTAATCGAT GAAACCTCTC
1441AAACTGGTGG GACAGGACAG AGGCGTTCGA GTTTGAATAG CATCAGCTCG TCAGATGCCA
1501AGCGATCAGG TGTCAAGACC TCTGGTTCAG AGGGAAGTGC CCCGATCAAC AATTCTGTCA
1561TCTCCGTTGA CTATAAGAGC TTTAAAGCTA CTTGGACGGA AGTGGTGCAC ATCAATCGGG
1621AGAGATGGAG GGCCAAGGTA CCCAAAGAGG AGAAGGCCAA GAAGGAAGCA GAGGAAAAGG
1681CTCGCATGGC CGCAGAGGAG CAGCAAAAGG AAATGGAAGC CAAAAGCCAG GCTGAAGAAG
1741GCGCATCTGG CAAAGCTGAG AAAAAGACGT CTGGAGAAAC TAAGAATCAA GTCAATGGAA
1801CACGGGCAAA CAAAAGTGAC AACCCTCGTG GGAAAAATTC CAAAGCCGAG AAGTCATCAG
1861GAGAACAGCA ACAGAATGGT GACTTCAAAG ATGGTAAAAA TAAGACAGAC AAGAAGGATC
1921ACTCTAACAT CGGAAATGAT TCAAAGAAAA CAGATGATTC ACAAGAGTAC CCAACTTTCT
1981TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)