Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_06700
Subject:
NM_001159956.1
Aligned Length:
1980
Identities:
1567
Gaps:
207

Alignment

Query    1  ATGGAGTCGCCAACAAAGGAGATTGAAGAATTTGAGAGCAACTCTCTGAAATACCTGCAACCGGAACAGATCGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GAAAATCTGGCTTCGGCTCCGCGGGCTGAGGAAATATAAGAAAACGTCC--CAG-----AGATTACGGTCTTTG  141
                                                       |.|.||  |||     || ||||||||||||
Sbjct    1  -------------------------------------------ATGGCCTACAGTATTCAG-TTACGGTCTTTG  30

Query  142  GTCAAACAATTAGAGAGAGGGGAAGCTTCAGTGGTAGATCTTAAGAAGAATTTGGAATATGCAGCCACAGTGCT  215
            |||||.||||||||..||||.||.||.||.||||||||.||||||||||||.||||||||||||||||||||||
Sbjct   31  GTCAAGCAATTAGAACGAGGAGAGGCCTCTGTGGTAGACCTTAAGAAGAATCTGGAATATGCAGCCACAGTGCT  104

Query  216  TGAATCTGTGTATATTGATGAAACAAGGAGACTCCTGGATACAGAGGATGAGCTCAGTGACATTCAGTCAGATG  289
            |||||||||.||||||||||||||||||.||||.||||||||||||||||||||.|||||||||||.|||||||
Sbjct  105  TGAATCTGTATATATTGATGAAACAAGGCGACTGCTGGATACAGAGGATGAGCTTAGTGACATTCAATCAGATG  178

Query  290  CTGTGCCTTCTGAGGTCCGAGACTGGCTGGCCTCCACCTTCACGCGGCAGATGGGGATGATGCTCAGGAGGAGC  363
            ||||||||||.||.||.||.||.||||||||||||||||||||.||||||||||||||||||||.|||||.||.
Sbjct  179  CTGTGCCTTCAGAAGTTCGGGATTGGCTGGCCTCCACCTTCACACGGCAGATGGGGATGATGCTTAGGAGAAGT  252

Query  364  GACGAGAAGCCCCGGTTCAAGAGCATCGTTCACGCAGTGCAGGCTGGGATATTTGTGGAGAGAATGTATAGACG  437
            ||.|||||||||.||||||||||||||||.||.||.|||||.|||||||||||||||||.||||||||.|||||
Sbjct  253  GATGAGAAGCCCAGGTTCAAGAGCATCGTCCATGCGGTGCAAGCTGGGATATTTGTGGAAAGAATGTACAGACG  326

Query  438  GACATCAAACATGGTTGGACTGAGCTATCCACCAGCTGTTATTGAGGCATTAAAGGATGTGGACAAGTGGTCAT  511
            ||||||||||||||||||.||||||||||||||.|||||.||.||.|||||.|||||||||||.|.||||||.|
Sbjct  327  GACATCAAACATGGTTGGGCTGAGCTATCCACCGGCTGTAATCGATGCATTGAAGGATGTGGATACGTGGTCCT  400

Query  512  TTGACGTCTTTTCCCTCAATGAGGCCAGTGGGGATCATGCACTGAAATTTATTTTCTATGAACTACTCACACGT  585
            |.||.||||||||||||||||||||||||||.||||||||||||||.||.||||||||||||.|||||||||||
Sbjct  401  TCGATGTCTTTTCCCTCAATGAGGCCAGTGGAGATCATGCACTGAAGTTCATTTTCTATGAATTACTCACACGT  474

Query  586  TATGATCTGATCAGCCGTTTCAAGATCCCCATTTCTGCACTTGTCTCATTTGTGGAGGCCCTGGAAGTGGGATA  659
            |||||.||||||||||||||.|||||.||.||||||||||||||||||||||||||||||||.||||||||.||
Sbjct  475  TATGACCTGATCAGCCGTTTTAAGATACCGATTTCTGCACTTGTCTCATTTGTGGAGGCCCTCGAAGTGGGTTA  548

Query  660  CAGCAAGCACAAAAATCCTTACCATAACTTAATGCACGCTGCCGATGTTACACAGACAGTGCATTACCTCCTCT  733
            ||||||||||||||||||||||||||||.|.|||||.||.||.||.||.||||||||.||||||||||||||.|
Sbjct  549  CAGCAAGCACAAAAATCCTTACCATAACCTGATGCATGCAGCTGACGTCACACAGACTGTGCATTACCTCCTTT  622

Query  734  ATAAGACAGGAGTGGCGAACTGGCTGACGGAGCTGGAGATCTTTGCTATAATCTTCTCAGCTGCCATCCATGAC  807
            |||||||||||||.||.|||||||||||.|||||||||||||||||.||||||||.||.|||||||||||||||
Sbjct  623  ATAAGACAGGAGTAGCAAACTGGCTGACAGAGCTGGAGATCTTTGCAATAATCTTTTCGGCTGCCATCCATGAC  696

Query  808  TACGAGCATACCGGAACCACCAACAATTTCCACATTCAGACTCGGTCTGATCCAGCTATTCTGTATAATGACAG  881
            ||.||.|||||.|||||.||.||||||||||||||||||||||||||.|||||||||||.|||||.||||||||
Sbjct  697  TATGAACATACTGGAACTACAAACAATTTCCACATTCAGACTCGGTCAGATCCAGCTATCCTGTACAATGACAG  770

Query  882  ATCTGTACTGGAGAATCACCATTTAAGTGCAGCTTATCGCCTTCTGCAAGATGACGAGGAAATGAATATTTTGA  955
            ||||||.||||||||.|||||..|.||||||||.||.|||||||||||.||.|||||.||.|||||||||.||.
Sbjct  771  ATCTGTCCTGGAGAACCACCACCTGAGTGCAGCCTACCGCCTTCTGCAGGAAGACGAAGAGATGAATATTCTGG  844

Query  956  TTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACCTTGGTAATTGAAATGGTGATGGCCACAGATATGTCT  1029
            |||||||||||||||||||||||||||||||||||||.|||||.|||||.|||||.|||||||||||||||||.
Sbjct  845  TTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACTTTGGTTATTGAGATGGTAATGGCCACAGATATGTCC  918

Query 1030  TGTCACTTCCAACAAATCAAAGCAATGAAGACTGCTCTGCAGCAGCCAGAAGCCATTGAAAAGCCAAAAGCCTT  1103
            |||||.|||||.|||||||||||.||||||||.||.||||||||.||||||||.|||||.|||||.||||||||
Sbjct  919  TGTCATTTCCAGCAAATCAAAGCCATGAAGACAGCCCTGCAGCAACCAGAAGCAATTGAGAAGCCGAAAGCCTT  992

Query 1104  ATCCCTTATGCTGCATACAGCAGATATTAGCCATCCAGCAAAAGCATGGGACCTCCATCATCGCTGGACAATGT  1177
            ||||||.|||.|.||.||||||||.||.||.|||||.||.||||||||||||||.||.||.||||||||.||||
Sbjct  993  ATCCCTCATGTTACACACAGCAGACATCAGTCATCCTGCGAAAGCATGGGACCTGCACCACCGCTGGACCATGT  1066

Query 1178  CACTCCTGGAGGAGTTCTTCAGACAGGGTGACAGAGAAGCAGAGCTGGGGCTGCCTTTTTCTCCTCTGTGTGAC  1251
            |.|||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||.||||||
Sbjct 1067  CTCTCCTGGAGGAGTTCTTTAGACAGGGTGACAGAGAAGCAGAGCTGGGGCTGCCATTTTCTCCTCTTTGTGAC  1140

Query 1252  CGAAAGTCCACTATGGTTGCTCAGTCACAAGTAGGTTTCATTGATTTCATCGTGGAACCCACCTTCACTGTGCT  1325
            .|||||||.||.||||||||||||||||||||.|||||.|||||.|||||.|||||.|||||||||||||||||
Sbjct 1141  AGAAAGTCAACCATGGTTGCTCAGTCACAAGTGGGTTTTATTGACTTCATTGTGGAGCCCACCTTCACTGTGCT  1214

Query 1326  TACGGACATGACCGAGAAGATTGTGAGTCCATTAATCGATGAAACCTCTCAAACTGGTGGGACAGGACAGAGGC  1399
            .|||||||||||||||||||||||||||||||||||.||.||||.|||.||.||||||||||||||.||||||.
Sbjct 1215  CACGGACATGACCGAGAAGATTGTGAGTCCATTAATTGACGAAAGCTCCCAGACTGGTGGGACAGGGCAGAGGA  1288

Query 1400  GTTCGAGTTTGAATAGCATCAGCTCGTCAGATGCCAAGCGATCAGGTGTCAAGACCTCTGGTTCAGAGGGAAGT  1473
            |.||.||||||||.|||||||.|||.||||||||.||||||||.||||||||||..|||||.|||||.||||||
Sbjct 1289  GATCAAGTTTGAACAGCATCAACTCATCAGATGCAAAGCGATCCGGTGTCAAGAGTTCTGGGTCAGATGGAAGT  1362

Query 1474  GCCCCGATCAACAATTCTGTCATCTCC-GTTGACTATAAGAGCTTTAAAGCTACTTGGACGGAAGTGGTGCACA  1546
            ||.||.||||||||||||||||| ||| ||||||||||||||.||||||||.||||||||.||.||||||||.|
Sbjct 1363  GCTCCCATCAACAATTCTGTCAT-TCCTGTTGACTATAAGAGTTTTAAAGCCACTTGGACTGAGGTGGTGCAGA  1435

Query 1547  TCAATCGGGAGAGATGGAGGGCCAAGGTACCCAAAGAGGAGAAGGCCAAGAAGGAAGCAGAGGAAAAGGCTCGC  1620
            |||||||||||.|.|||.|.|||||||||||||||||.||.||.||||||||||||||.||.||.|||||||||
Sbjct 1436  TCAATCGGGAGCGGTGGCGAGCCAAGGTACCCAAAGAAGAAAAAGCCAAGAAGGAAGCTGAAGAGAAGGCTCGC  1509

Query 1621  ATGGCCGCAGAGGAGCAGCAAAAGGAAATGGAAGCCAAAAGCCAGGCTGAAGAAGGCGCATCTGGCAAAGCTGA  1694
            .||||.||.|||||..||||||||||||||||||||||||||||.||||||.|||||.||.|..||||||..||
Sbjct 1510  CTGGCTGCTGAGGAAAAGCAAAAGGAAATGGAAGCCAAAAGCCAAGCTGAACAAGGCACAACCAGCAAAGGCGA  1583

Query 1695  GAAAAAGACGTCTGGAGAAACTAAGAATCAAGTCAATGGAACACGGGCAAACAAAAGTGACAACCCTCGTGGGA  1768
            |||||||||.||.||||||.|.||.|.||||||||||||||||||      |||..||||.|||||||||||||
Sbjct 1584  GAAAAAGACATCAGGAGAAGCCAAAAGTCAAGTCAATGGAACACG------CAAGGGTGATAACCCTCGTGGGA  1651

Query 1769  AAAATTCCAAAGCCGAGAAGTCATCAGGAGAACAGCAACAGAATGGTGACTTCAAAGATGGTAAAAATAAGACA  1842
            |.||.|||||||..||.|||   .||||.|||.||||.|||||.||||||||.|||||.||||||||||||.||
Sbjct 1652  AGAACTCCAAAGGAGAAAAG---GCAGGCGAAAAGCAGCAGAACGGTGACTTGAAAGACGGTAAAAATAAGGCA  1722

Query 1843  GACAAGAAGGATCACTCTAACATCGGAAATGATTCAAAGAAAACAGATGATTCACAAGAG--------------  1902
            |||||||||||||||||.||||.|||||||||.||||||||||||||||.|.|| ||||.              
Sbjct 1723  GACAAGAAGGATCACTCCAACACCGGAAATGAGTCAAAGAAAACAGATGGTACA-AAGAAGCGTTCTCATGGCT  1795

Query 1903  --------------------------------------------------------  1902
                                                                    
Sbjct 1796  CACCTGCTCCGAGCACTAGTTCCACAAGTCGCATTACCTTGCCAGGAGACTACGGA  1851

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.