Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_06700
Subject:
NM_001159957.1
Aligned Length:
1911
Identities:
1593
Gaps:
111

Alignment

Query    1  ATGGAGTCGCCAACAAAGGAGATTGAAGAATTTGAGAGCAACTCTCTGAAATACCTGCAACCGGAACAGATCGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GAAAATCTGGC--------TTCGGCTCCGCGGGCTGAGGAAATATAAGAAAACGTCCCAGAGATTACGGTCTTT  140
                  .||||        ||            |.|||||||||||||||||||||||||||.|||||||||||
Sbjct    1  ------ATGGCCTACAGTATT------------CAGAGGAAATATAAGAAAACGTCCCAGAGGTTACGGTCTTT  56

Query  141  GGTCAAACAATTAGAGAGAGGGGAAGCTTCAGTGGTAGATCTTAAGAAGAATTTGGAATATGCAGCCACAGTGC  214
            ||||||.||||||||..||||.||.||.||.||||||||.||||||||||||.|||||||||||||||||||||
Sbjct   57  GGTCAAGCAATTAGAACGAGGAGAGGCCTCTGTGGTAGACCTTAAGAAGAATCTGGAATATGCAGCCACAGTGC  130

Query  215  TTGAATCTGTGTATATTGATGAAACAAGGAGACTCCTGGATACAGAGGATGAGCTCAGTGACATTCAGTCAGAT  288
            ||||||||||.||||||||||||||||||.||||.||||||||||||||||||||.|||||||||||.||||||
Sbjct  131  TTGAATCTGTATATATTGATGAAACAAGGCGACTGCTGGATACAGAGGATGAGCTTAGTGACATTCAATCAGAT  204

Query  289  GCTGTGCCTTCTGAGGTCCGAGACTGGCTGGCCTCCACCTTCACGCGGCAGATGGGGATGATGCTCAGGAGGAG  362
            |||||||||||.||.||.||.||.||||||||||||||||||||.||||||||||||||||||||.|||||.||
Sbjct  205  GCTGTGCCTTCAGAAGTTCGGGATTGGCTGGCCTCCACCTTCACACGGCAGATGGGGATGATGCTTAGGAGAAG  278

Query  363  CGACGAGAAGCCCCGGTTCAAGAGCATCGTTCACGCAGTGCAGGCTGGGATATTTGTGGAGAGAATGTATAGAC  436
            .||.|||||||||.||||||||||||||||.||.||.|||||.|||||||||||||||||.||||||||.||||
Sbjct  279  TGATGAGAAGCCCAGGTTCAAGAGCATCGTCCATGCGGTGCAAGCTGGGATATTTGTGGAAAGAATGTACAGAC  352

Query  437  GGACATCAAACATGGTTGGACTGAGCTATCCACCAGCTGTTATTGAGGCATTAAAGGATGTGGACAAGTGGTCA  510
            |||||||||||||||||||.||||||||||||||.|||||.||.||.|||||.|||||||||||.|.||||||.
Sbjct  353  GGACATCAAACATGGTTGGGCTGAGCTATCCACCGGCTGTAATCGATGCATTGAAGGATGTGGATACGTGGTCC  426

Query  511  TTTGACGTCTTTTCCCTCAATGAGGCCAGTGGGGATCATGCACTGAAATTTATTTTCTATGAACTACTCACACG  584
            ||.||.||||||||||||||||||||||||||.||||||||||||||.||.||||||||||||.||||||||||
Sbjct  427  TTCGATGTCTTTTCCCTCAATGAGGCCAGTGGAGATCATGCACTGAAGTTCATTTTCTATGAATTACTCACACG  500

Query  585  TTATGATCTGATCAGCCGTTTCAAGATCCCCATTTCTGCACTTGTCTCATTTGTGGAGGCCCTGGAAGTGGGAT  658
            ||||||.||||||||||||||.|||||.||.||||||||||||||||||||||||||||||||.||||||||.|
Sbjct  501  TTATGACCTGATCAGCCGTTTTAAGATACCGATTTCTGCACTTGTCTCATTTGTGGAGGCCCTCGAAGTGGGTT  574

Query  659  ACAGCAAGCACAAAAATCCTTACCATAACTTAATGCACGCTGCCGATGTTACACAGACAGTGCATTACCTCCTC  732
            |||||||||||||||||||||||||||||.|.|||||.||.||.||.||.||||||||.||||||||||||||.
Sbjct  575  ACAGCAAGCACAAAAATCCTTACCATAACCTGATGCATGCAGCTGACGTCACACAGACTGTGCATTACCTCCTT  648

Query  733  TATAAGACAGGAGTGGCGAACTGGCTGACGGAGCTGGAGATCTTTGCTATAATCTTCTCAGCTGCCATCCATGA  806
            ||||||||||||||.||.|||||||||||.|||||||||||||||||.||||||||.||.||||||||||||||
Sbjct  649  TATAAGACAGGAGTAGCAAACTGGCTGACAGAGCTGGAGATCTTTGCAATAATCTTTTCGGCTGCCATCCATGA  722

Query  807  CTACGAGCATACCGGAACCACCAACAATTTCCACATTCAGACTCGGTCTGATCCAGCTATTCTGTATAATGACA  880
            |||.||.|||||.|||||.||.||||||||||||||||||||||||||.|||||||||||.|||||.|||||||
Sbjct  723  CTATGAACATACTGGAACTACAAACAATTTCCACATTCAGACTCGGTCAGATCCAGCTATCCTGTACAATGACA  796

Query  881  GATCTGTACTGGAGAATCACCATTTAAGTGCAGCTTATCGCCTTCTGCAAGATGACGAGGAAATGAATATTTTG  954
            |||||||.||||||||.|||||..|.||||||||.||.|||||||||||.||.|||||.||.|||||||||.||
Sbjct  797  GATCTGTCCTGGAGAACCACCACCTGAGTGCAGCCTACCGCCTTCTGCAGGAAGACGAAGAGATGAATATTCTG  870

Query  955  ATTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACCTTGGTAATTGAAATGGTGATGGCCACAGATATGTC  1028
            .|||||||||||||||||||||||||||||||||||||.|||||.|||||.|||||.|||||||||||||||||
Sbjct  871  GTTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACTTTGGTTATTGAGATGGTAATGGCCACAGATATGTC  944

Query 1029  TTGTCACTTCCAACAAATCAAAGCAATGAAGACTGCTCTGCAGCAGCCAGAAGCCATTGAAAAGCCAAAAGCCT  1102
            .|||||.|||||.|||||||||||.||||||||.||.||||||||.||||||||.|||||.|||||.|||||||
Sbjct  945  CTGTCATTTCCAGCAAATCAAAGCCATGAAGACAGCCCTGCAGCAACCAGAAGCAATTGAGAAGCCGAAAGCCT  1018

Query 1103  TATCCCTTATGCTGCATACAGCAGATATTAGCCATCCAGCAAAAGCATGGGACCTCCATCATCGCTGGACAATG  1176
            |||||||.|||.|.||.||||||||.||.||.|||||.||.||||||||||||||.||.||.||||||||.|||
Sbjct 1019  TATCCCTCATGTTACACACAGCAGACATCAGTCATCCTGCGAAAGCATGGGACCTGCACCACCGCTGGACCATG  1092

Query 1177  TCACTCCTGGAGGAGTTCTTCAGACAGGGTGACAGAGAAGCAGAGCTGGGGCTGCCTTTTTCTCCTCTGTGTGA  1250
            ||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||.|||||
Sbjct 1093  TCTCTCCTGGAGGAGTTCTTTAGACAGGGTGACAGAGAAGCAGAGCTGGGGCTGCCATTTTCTCCTCTTTGTGA  1166

Query 1251  CCGAAAGTCCACTATGGTTGCTCAGTCACAAGTAGGTTTCATTGATTTCATCGTGGAACCCACCTTCACTGTGC  1324
            |.|||||||.||.||||||||||||||||||||.|||||.|||||.|||||.|||||.||||||||||||||||
Sbjct 1167  CAGAAAGTCAACCATGGTTGCTCAGTCACAAGTGGGTTTTATTGACTTCATTGTGGAGCCCACCTTCACTGTGC  1240

Query 1325  TTACGGACATGACCGAGAAGATTGTGAGTCCATTAATCGATGAAACCTCTCAAACTGGTGGGACAGGACAGAGG  1398
            |.|||||||||||||||||||||||||||||||||||.||.||||.|||.||.||||||||||||||.||||||
Sbjct 1241  TCACGGACATGACCGAGAAGATTGTGAGTCCATTAATTGACGAAAGCTCCCAGACTGGTGGGACAGGGCAGAGG  1314

Query 1399  CGTTCGAGTTTGAATAGCATCAGCTCGTCAGATGCCAAGCGATCAGGTGTCAAGACCTCTGGTTCAGAGGGAAG  1472
            .|.||.||||||||.|||||||.|||.||||||||.||||||||.||||||||||..|||||.|||||.|||||
Sbjct 1315  AGATCAAGTTTGAACAGCATCAACTCATCAGATGCAAAGCGATCCGGTGTCAAGAGTTCTGGGTCAGATGGAAG  1388

Query 1473  TGCCCCGATCAACAATTCTGTCATCTCC-GTTGACTATAAGAGCTTTAAAGCTACTTGGACGGAAGTGGTGCAC  1545
            |||.||.||||||||||||||||| ||| ||||||||||||||.||||||||.||||||||.||.||||||||.
Sbjct 1389  TGCTCCCATCAACAATTCTGTCAT-TCCTGTTGACTATAAGAGTTTTAAAGCCACTTGGACTGAGGTGGTGCAG  1461

Query 1546  ATCAATCGGGAGAGATGGAGGGCCAAGGTACCCAAAGAGGAGAAGGCCAAGAAGGAAGCAGAGGAAAAGGCTCG  1619
            ||||||||||||.|.|||.|.|||||||||||||||||.||.||.||||||||||||||.||.||.||||||||
Sbjct 1462  ATCAATCGGGAGCGGTGGCGAGCCAAGGTACCCAAAGAAGAAAAAGCCAAGAAGGAAGCTGAAGAGAAGGCTCG  1535

Query 1620  CATGGCCGCAGAGGAGCAGCAAAAGGAAATGGAAGCCAAAAGCCAGGCTGAAGAAGGCGCATCTGGCAAAGCTG  1693
            |.||||.||.|||||..||||||||||||||||||||||||||||.||||||.|||||.||.|..||||||..|
Sbjct 1536  CCTGGCTGCTGAGGAAAAGCAAAAGGAAATGGAAGCCAAAAGCCAAGCTGAACAAGGCACAACCAGCAAAGGCG  1609

Query 1694  AGAAAAAGACGTCTGGAGAAACTAAGAATCAAGTCAATGGAACACGGGCAAACAAAAGTGACAACCCTCGTGGG  1767
            ||||||||||.||.||||||.|.||.|.||||||||||||||||||      |||..||||.||||||||||||
Sbjct 1610  AGAAAAAGACATCAGGAGAAGCCAAAAGTCAAGTCAATGGAACACG------CAAGGGTGATAACCCTCGTGGG  1677

Query 1768  AAAAATTCCAAAGCCGAGAAGTCATCAGGAGAACAGCAACAGAATGGTGACTTCAAAGATGGTAAAAATAAGAC  1841
            ||.||.|||||||..||.|||   .||||.|||.||||.|||||.||||||||.|||||.||||||||||||.|
Sbjct 1678  AAGAACTCCAAAGGAGAAAAG---GCAGGCGAAAAGCAGCAGAACGGTGACTTGAAAGACGGTAAAAATAAGGC  1748

Query 1842  AGACAAGAAGGATCACTCTAACATCGGAAATGATTCAAAGAAAACAGATGATTCACAAGAG  1902
            ||||||||||||||||||.||||.|||||||||.||||||||||||||||||.||.|.|||
Sbjct 1749  AGACAAGAAGGATCACTCCAACACCGGAAATGAGTCAAAGAAAACAGATGATCCAGAGGAG  1809

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