Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_06700
Subject:
XR_001744803.1
Aligned Length:
3024
Identities:
1862
Gaps:
1128

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGTTAAAACCGGTGTATGCCACTTCACAGCATTTGCACTTCGACCGAGAGCAGCCCTGTCTTTTGCCTGAGGAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCTCACAATGGAGTTGCCATTGTCAGCAAACAATTAGAGTGCCCGCTTTTAGGGGGCCAGCTGAGAGGTTGTA  148

Query    1  -----------------------ATGGAGTC-----------------GCCAA-------CAAA-------GGA  20
                                   .|||||||                 |||.|       ||||       |||
Sbjct  149  TTTGCTGTGGGAAACCCTGGGCTTTGGAGTCACACGCAGATTTATCATGCCCATTAGTTGCAAATGAAGCTGGA  222

Query   21  GATTGAAGAATTTGAGAGC-------------------------------AACTCTCT---GAAATACCTGCAA  60
            ||  .||||||...|||.|                               ||||.|||   |||.|.||| ||.
Sbjct  223  GA--CAAGAATGCCAGACCACTGGCCCGCTTCTCTCGGTCTAAGTCACAGAACTGTCTGTGGAACTCCCT-CAT  293

Query   61  CCGGA-------ACAG--------ATCGAGAA------------AATCTG-------GCTTCGGCTCC--GCGG  98
            |  ||       ||||        |..|||||            ||| ||       .|.|||.|.||  |.||
Sbjct  294  C--GATGGGCTCACAGGGAATGTCAAGGAGAAGCCAAGGCCAACAAT-TGTCCATGACCCTCGACCCCCAGAGG  364

Query   99  --------GCTGAGGAAAT-----------ATA---------------AGAAAACGTCCCAGAGATTACGGTCT  138
                    |||||.|||.|           |||               .|||.||.|||...||||||||||||
Sbjct  365  AGATCCTAGCTGATGAATTGCCACAGCTGGATAGCCCAGAAGTCTTGGTGAAGACATCCTTCAGATTACGGTCT  438

Query  139  TTGGTCAAACAATTAGAGAGAGGGGAAGCTTCAGTGGTAGATCTTAAGAAGAATTTGGAATATGCAGCCACAGT  212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  439  TTGGTCAAACAATTAGAGAGAGGGGAAGCTTCAGTGGTAGATCTTAAGAAGAATTTGGAATATGCAGCCACAGT  512

Query  213  GCTTGAATCTGTGTATATTGATGAAACAAGGAGACTCCTGGATACAGAGGATGAGCTCAGTGACATTCAGTCAG  286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  513  GCTTGAATCTGTGTATATTGATGAAACAAGGAGACTCCTGGATACAGAGGATGAGCTCAGTGACATTCAGTCAG  586

Query  287  ATGCTGTGCCTTCTGAGGTCCGAGACTGGCTGGCCTCCACCTTCACGCGGCAGATGGGGATGATGCTCAGGAGG  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  587  ATGCTGTGCCTTCTGAGGTCCGAGACTGGCTGGCCTCCACCTTCACGCGGCAGATGGGGATGATGCTCAGGAGG  660

Query  361  AGCGACGAGAAGCCCCGGTTCAAGAGCATCGTTCACGCAGTGCAGGCTGGGATATTTGTGGAGAGAATGTATAG  434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  AGCGACGAGAAGCCCCGGTTCAAGAGCATCGTTCACGCAGTGCAGGCTGGGATATTTGTGGAGAGAATGTATAG  734

Query  435  ACGGACATCAAACATGGTTGGACTGAGCTATCCACCAGCTGTTATTGAGGCATTAAAGGATGTGGACAAGTGGT  508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735  ACGGACATCAAACATGGTTGGACTGAGCTATCCACCAGCTGTTATTGAGGCATTAAAGGATGTGGACAAGTGGT  808

Query  509  CATTTGACGTCTTTTCCCTCAATGAGGCCAGTGGGGATCATGCACTGAAATTTATTTTCTATGAACTACTCACA  582
            |.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809  CCTTTGACGTCTTTTCCCTCAATGAGGCCAGTGGGGATCATGCACTGAAATTTATTTTCTATGAACTACTCACA  882

Query  583  CGTTATGATCTGATCAGCCGTTTCAAGATCCCCATTTCTGCACTTGTCTCATTTGTGGAGGCCCTGGAAGTGGG  656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  883  CGTTATGATCTGATCAGCCGTTTCAAGATCCCCATTTCTGCACTTGTCTCATTTGTGGAGGCCCTGGAAGTGGG  956

Query  657  ATACAGCAAGCACAAAAATCCTTACCATAACTTAATGCACGCTGCCGATGTTACACAGACAGTGCATTACCTCC  730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  957  ATACAGCAAGCACAAAAATCCTTACCATAACTTAATGCACGCTGCCGATGTTACACAGACAGTGCATTACCTCC  1030

Query  731  TCTATAAGACAGGAGTGGCGAACTGGCTGACGGAGCTGGAGATCTTTGCTATAATCTTCTCAGCTGCCATCCAT  804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031  TCTATAAGACAGGAGTGGCGAACTGGCTGACGGAGCTGGAGATCTTTGCTATAATCTTCTCAGCTGCCATCCAT  1104

Query  805  GACTACGAGCATACCGGAACCACCAACAATTTCCACATTCAGACTCGGTCTGATCCAGCTATTCTGTATAATGA  878
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105  GACTACGAGCATACCGGAACCACCAACAATTTCCACATTCAGACTCGGTCTGATCCAGCTATTCTGTATAATGA  1178

Query  879  CAGATCTGTACTGGAGAATCACCATTTAAGTGCAGCTTATCGCCTTCTGCAAGATGACGAGGAAATGAATATTT  952
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179  CAGATCTGTACTGGAGAATCACCATTTAAGTGCAGCTTATCGCCTTCTGCAAGATGACGAGGAAATGAATATTT  1252

Query  953  TGATTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACCTTGGTAATTGAAATGGTGATGGCCACAGATATG  1026
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253  TGATTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACCTTGGTAATTGAAATGGTGATGGCCACAGATATG  1326

Query 1027  TCTTGTCACTTCCAACAAATCAAAGCAATGAAGACTGCTCTGCAGCAGCCAGAAGCCATTGAAAAGCCAAAAGC  1100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327  TCTTGTCACTTCCAACAAATCAAAGCAATGAAGACTGCTCTGCAGCAGCCAGAAGCCATTGAAAAGCCAAAAGC  1400

Query 1101  CTTATCCCTTATGCTGCATACAGCAGATATTAGCCATCCAGCAAAAGCATGGGACCTCCATCATCGCTGGACAA  1174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401  CTTATCCCTTATGCTGCATACAGCAGATATTAGCCATCCAGCAAAAGCATGGGACCTCCATCATCGCTGGACAA  1474

Query 1175  TGTCACTCCTGGAGGAGTTCTTCAGACAGGGTGACAGAGAAGCAGAGCTGGGGCTGCCTTTTTCTCCTCTGTGT  1248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475  TGTCACTCCTGGAGGAGTTCTTCAGACAGGGTGACAGAGAAGCAGAGCTGGGGCTGCCTTTTTCTCCTCTGTGT  1548

Query 1249  GACCGAAAGTCCACTATGGTTGCTCAGTCACAAGTAGGTTTCATTGATTTCATCGTGGAACCCACCTTCACTGT  1322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549  GACCGAAAGTCCACTATGGTTGCTCAGTCACAAGTAGGTTTCATTGATTTCATCGTGGAACCCACCTTCACTGT  1622

Query 1323  GCTTACGGACATGACCGAGAAGATTGTGAGTCCATTAATCGATGAAACCTCTCAAACTGGTGGGACAGGACAGA  1396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623  GCTTACGGACATGACCGAGAAGATTGTGAGTCCATTAATCGATGAAACCTCTCAAACTGGTGGGACAGGACAGA  1696

Query 1397  GGCGTTCGAGTTTGAATAGCATCAGCTCGTCAGATGCCAAGCGATCAGGTGTCAAGACCTCTGGTTCAGAGGGA  1470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697  GGCGTTCGAGTTTGAATAGCATCAGCTCGTCAGATGCCAAGCGATCAGGTGTCAAGACCTCTGGTTCAGAGGGA  1770

Query 1471  AGTGCCCCGATCAACAATTCTGTCATCTCCGTTGACTATAAGAGCTTTAAAGCTACTTGGACGGAAGTGGTGCA  1544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771  AGTGCCCCGATCAACAATTCTGTCATCTCCGTTGACTATAAGAGCTTTAAAGCTACTTGGACGGAAGTGGTGCA  1844

Query 1545  CATCAATCGGGAGAGATGGAGGGCCAAGGTACCCAAAGAGGAGAAGGCCAAGAAGGAAGCAGAGGAAAAGGCTC  1618
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845  CATCAATCGGGAGAGATGGAGGGCCAAGGTACCCAAAGAGGAGAAGGCCAAGAAGGAAGCAGAGGAAAAGGCTC  1918

Query 1619  GCATGGCCGCAGAGGAGCAGCAAAAGGAAATGGAAGCCAAAAGCCAGGCTGAAGAAGGCGCATCTGGCAAAGCT  1692
            ||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919  GCCTGGCCGCAGAGGAGCAGCAAAAGGAAATGGAAGCCAAAAGCCAGGCTGAAGAAGGCGCATCTGGCAAAGCT  1992

Query 1693  GAGAAAAAGACGTCTGGAGAAACTAAGAATCAAGTCAATGGAACACGGGCAAACAAAAGTGACAACCCTCGTGG  1766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993  GAGAAAAAGACGTCTGGAGAAACTAAGAATCAAGTCAATGGAACACGGGCAAACAAAAGTGACAACCCTCGTGG  2066

Query 1767  GAAAAATTCCAAAGCCGAGAAGTCATCAGGAGAACAGCAACAGAATGGTGACTTCAAAGATGGTAAAAATAAGA  1840
            ||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2067  GAAAAACTCCAAAGCCGAGAAGTCATCAGGAGAACAGCAACAGAATGGTGACTTCAAAGATGGTAAAAATAAGA  2140

Query 1841  CAGACAAGAAGGATCACTCTAACATCGGAAATGATTCAAAGAAAACAGATGATTCACAAGAG------------  1902
            |||||||||||||||||||||||||||||||||||||||||||||||||||...||.||.||            
Sbjct 2141  CAGACAAGAAGGATCACTCTAACATCGGAAATGATTCAAAGAAAACAGATGGCACAAAACAGCGTTCTCACGGC  2214

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2215  TCACCAGCCCCAAGCACCAGCTCCACGTGTCGCCTTACGTTGCCAGGAAGTCTTCTGCAATTTCCTTGGAGGAG  2288

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2289  TCTCATCTTGCTGGAAGGACCTGCTACTGAAGGTGAGGATACACCTATCCTTTTCTTCTTCAGGAAGGAAGAAT  2362

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2363  ATATGGATGCTCTATTTCCTGAGGCCTTTCTTATCTGAAGTGTTGCTTCATATGACAACTTGAAAGGCACACAA  2436

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2437  TTCGTGAGTTGCAAAATTTCTACTTTAAAATACAACTATGCACCTCCACTATCTTCTGGCATCTAATATGAGGA  2510

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2511  TGCTTTTTGAGAGGCACTGCATGGACAACGGGGAATACTGAAAGACACAGCCCAGCCATTGAGGAGCTTCTCCA  2584

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2585  GTGGACAAAATCCAAATAAGGATAAAATAGATGGCTTTTCTTCCTGAAAGATGGCAAATGCTTCAAAAACTGAA  2658

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2659  CAAGTTGATAAATTATACCGGGACGAGCTCACCCACCACTGAAGTGCAACCATCTTTGGGGTAGCTCCCTACAG  2732

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2733  CTGTTTACCACCATGCTGTGGTGCCTAGGAGCAGTCTGTCATAAAGAAAAGAAGAATGCACTTGGAATATAAGC  2806

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2807  AACAGGCAATTTGCAGAAGAGAAGATATAATTATCTAGATTGGAATATGACCAGGACAACCATACCATTCCCAC  2880

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2881  AAACCACCAAGAAGGCAAAAAGTAAGCAAGAGAGGTTTGGGTATCTGGTATCTGTTAAGAGAGGTTTGGATATC  2954

Query 1903  ----------------------------------------------------------------  1902
                                                                            
Sbjct 2955  TGATAATTGTTTGAATCACAATCTAATGTTTTTATGCTACCAAAAAATGAAATTTAGAAACCTT  3018

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