Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_06700
Subject:
XR_377431.1
Aligned Length:
3546
Identities:
1679
Gaps:
1655

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGCAGACTGACCGTTGTTTACCACAAAGGCACACCGGAAACCGGGGCCCTCTTAGAGTTGGCGTCCTACATCTG  74

Query    1  -----------------------------------ATGGAGTCGCCAACAAAGGAGATTGAAGAATTTGAGAGC  39
                                               ||||||||.|||||.|||||.|||||||||||.||||||
Sbjct   75  CTAATGGCCTACAGTATTCATGAGAACCTGCAGCTATGGAGTCTCCAACCAAGGAAATTGAAGAATTCGAGAGC  148

Query   40  AACTCTCTGAAATACCTGCAACCGGAACAGATCGAGAAAATCTGGCTTCGGCTCCGCGGGCTGAGGAAATATAA  113
            ||||||||||||.||||||||||.||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AACTCTCTGAAACACCTGCAACCTGAGCAGATCGAGAAAATCTGGCTTCGGCTCCGCGGGCTGAGGAAATATAA  222

Query  114  GAAAACGTCCCAGAGATTACGGTCTTTGGTCAAACAATTAGAGAGAGGGGAAGCTTCAGTGGTAGATCTTAAGA  187
            |||||||||||||||.|||||||||||||||||.||||||||..||||.||.||.||.||||||||.|||||||
Sbjct  223  GAAAACGTCCCAGAGGTTACGGTCTTTGGTCAAGCAATTAGAACGAGGAGAGGCCTCTGTGGTAGACCTTAAGA  296

Query  188  AGAATTTGGAATATGCAGCCACAGTGCTTGAATCTGTGTATATTGATGAAACAAGGAGACTCCTGGATACAGAG  261
            |||||.|||||||||||||||||||||||||||||||.||||||||||||||||||.||||.||||||||||||
Sbjct  297  AGAATCTGGAATATGCAGCCACAGTGCTTGAATCTGTATATATTGATGAAACAAGGCGACTGCTGGATACAGAG  370

Query  262  GATGAGCTCAGTGACATTCAGTCAGATGCTGTGCCTTCTGAGGTCCGAGACTGGCTGGCCTCCACCTTCACGCG  335
            ||||||||.|||||||||||.|||||||||||||||||.||.||.||.||.||||||||||||||||||||.||
Sbjct  371  GATGAGCTTAGTGACATTCAATCAGATGCTGTGCCTTCAGAAGTTCGGGATTGGCTGGCCTCCACCTTCACACG  444

Query  336  GCAGATGGGGATGATGCTCAGGAGGAGCGACGAGAAGCCCCGGTTCAAGAGCATCGTTCACGCAGTGCAGGCTG  409
            ||||||||||||||||||.|||||.||.||.|||||||||.||||||||||||||||.||.||.|||||.||||
Sbjct  445  GCAGATGGGGATGATGCTTAGGAGAAGTGATGAGAAGCCCAGGTTCAAGAGCATCGTCCATGCGGTGCAAGCTG  518

Query  410  GGATATTTGTGGAGAGAATGTATAGACGGACATCAAACATGGTTGGACTGAGCTATCCACCAGCTGTTATTGAG  483
            |||||||||||||.||||||||.|||||||||||||||||||||||.||||||||||||||.|||||.||.||.
Sbjct  519  GGATATTTGTGGAAAGAATGTACAGACGGACATCAAACATGGTTGGGCTGAGCTATCCACCGGCTGTAATCGAT  592

Query  484  GCATTAAAGGATGTGGACAAGTGGTCATTTGACGTCTTTTCCCTCAATGAGGCCAGTGGGGATCATGCACTGAA  557
            |||||.|||||||||||.|.||||||.||.||.||||||||||||||||||||||||||.||||||||||||||
Sbjct  593  GCATTGAAGGATGTGGATACGTGGTCCTTCGATGTCTTTTCCCTCAATGAGGCCAGTGGAGATCATGCACTGAA  666

Query  558  ATTTATTTTCTATGAACTACTCACACGTTATGATCTGATCAGCCGTTTCAAGATCCCCATTTCTGCACTTGTCT  631
            .||.||||||||||||.||||||||||||||||.||||||||||||||.|||||.||.||||||||||||||||
Sbjct  667  GTTCATTTTCTATGAATTACTCACACGTTATGACCTGATCAGCCGTTTTAAGATACCGATTTCTGCACTTGTCT  740

Query  632  CATTTGTGGAGGCCCTGGAAGTGGGATACAGCAAGCACAAAAATCCTTACCATAACTTAATGCACGCTGCCGAT  705
            ||||||||||||||||.||||||||.||||||||||||||||||||||||||||||.|.|||||.||.||.||.
Sbjct  741  CATTTGTGGAGGCCCTCGAAGTGGGTTACAGCAAGCACAAAAATCCTTACCATAACCTGATGCATGCAGCTGAC  814

Query  706  GTTACACAGACAGTGCATTACCTCCTCTATAAGACAGGAGTGGCGAACTGGCTGACGGAGCTGGAGATCTTTGC  779
            ||.||||||||.||||||||||||||.||||||||||||||.||.|||||||||||.|||||||||||||||||
Sbjct  815  GTCACACAGACTGTGCATTACCTCCTTTATAAGACAGGAGTAGCAAACTGGCTGACAGAGCTGGAGATCTTTGC  888

Query  780  TATAATCTTCTCAGCTGCCATCCATGACTACGAGCATACCGGAACCACCAACAATTTCCACATTCAGACTCGGT  853
            .||||||||.||.|||||||||||||||||.||.|||||.|||||.||.|||||||||||||||||||||||||
Sbjct  889  AATAATCTTTTCGGCTGCCATCCATGACTATGAACATACTGGAACTACAAACAATTTCCACATTCAGACTCGGT  962

Query  854  CTGATCCAGCTATTCTGTATAATGACAGATCTGTACTGGAGAATCACCATTTAAGTGCAGCTTATCGCCTTCTG  927
            |.|||||||||||.|||||.||||||||||||||.||||||||.|||||..|.||||||||.||.|||||||||
Sbjct  963  CAGATCCAGCTATCCTGTACAATGACAGATCTGTCCTGGAGAACCACCACCTGAGTGCAGCCTACCGCCTTCTG  1036

Query  928  CAAGATGACGAGGAAATGAATATTTTGATTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACCTTGGTAAT  1001
            ||.||.|||||.||.|||||||||.||.|||||||||||||||||||||||||||||||||||||.|||||.||
Sbjct 1037  CAGGAAGACGAAGAGATGAATATTCTGGTTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACTTTGGTTAT  1110

Query 1002  TGAAATGGTGATGGCCACAGATATGTCTTGTCACTTCCAACAAATCAAAGCAATGAAGACTGCTCTGCAGCAGC  1075
            |||.|||||.|||||||||||||||||.|||||.|||||.|||||||||||.||||||||.||.||||||||.|
Sbjct 1111  TGAGATGGTAATGGCCACAGATATGTCCTGTCATTTCCAGCAAATCAAAGCCATGAAGACAGCCCTGCAGCAAC  1184

Query 1076  CAGAAGCCATTGAAAAGCCAAAAGCCTTATCCCTTATGCTGCATACAGCAGATATTAGCCATCCAGCAAAAGCA  1149
            |||||||.|||||.|||||.||||||||||||||.|||.|.||.||||||||.||.||.|||||.||.||||||
Sbjct 1185  CAGAAGCAATTGAGAAGCCGAAAGCCTTATCCCTCATGTTACACACAGCAGACATCAGTCATCCTGCGAAAGCA  1258

Query 1150  TGGGACCTCCATCATCGCTGGACAATGTCACTCCTGGAGGAGTTCTTCAGACAGGGTGACAGAGAAGCAGAGCT  1223
            ||||||||.||.||.||||||||.|||||.|||||||||||||||||.||||||||||||||||||||||||||
Sbjct 1259  TGGGACCTGCACCACCGCTGGACCATGTCTCTCCTGGAGGAGTTCTTTAGACAGGGTGACAGAGAAGCAGAGCT  1332

Query 1224  GGGGCTGCCTTTTTCTCCTCTGTGTGACCGAAAGTCCACTATGGTTGCTCAGTCACAAGTAGGTTTCATTGATT  1297
            |||||||||.|||||||||||.||||||.|||||||.||.||||||||||||||||||||.|||||.|||||.|
Sbjct 1333  GGGGCTGCCATTTTCTCCTCTTTGTGACAGAAAGTCAACCATGGTTGCTCAGTCACAAGTGGGTTTTATTGACT  1406

Query 1298  TCATCGTGGAACCCACCTTCACTGTGCTTACGGACATGACCGAGAAGATTGTGAGTCCATTAATCGATGAAACC  1371
            ||||.|||||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||.||.||||.|
Sbjct 1407  TCATTGTGGAGCCCACCTTCACTGTGCTCACGGACATGACCGAGAAGATTGTGAGTCCATTAATTGACGAAAGC  1480

Query 1372  TCTCAAACTGGTGGGACAGGACAGAGGCGTTCGAGTTTGAATAGCATCAGCTCGTCAGATGCCAAGCGATCAGG  1445
            ||.||.||||||||||||||.||||||.|.||.||||||||.|||||||.|||.||||||||.||||||||.||
Sbjct 1481  TCCCAGACTGGTGGGACAGGGCAGAGGAGATCAAGTTTGAACAGCATCAACTCATCAGATGCAAAGCGATCCGG  1554

Query 1446  TGTCAAGACCTCTGGTTCAGAGGGAAGTGCCCCGATCAACAATTCTGTCATCTCC-GTTGACTATAAGAGCTTT  1518
            ||||||||..|||||.|||||.||||||||.||.||||||||||||||||| ||| ||||||||||||||.|||
Sbjct 1555  TGTCAAGAGTTCTGGGTCAGATGGAAGTGCTCCCATCAACAATTCTGTCAT-TCCTGTTGACTATAAGAGTTTT  1627

Query 1519  AAAGCTACTTGGACGGAAGTGGTGCACATCAATCGGGAGAGATGGAGGGCCAAGGTACCCAAAGAGGAGAAGGC  1592
            |||||.||||||||.||.||||||||.||||||||||||.|.|||.|.|||||||||||||||||.||.||.||
Sbjct 1628  AAAGCCACTTGGACTGAGGTGGTGCAGATCAATCGGGAGCGGTGGCGAGCCAAGGTACCCAAAGAAGAAAAAGC  1701

Query 1593  CAAGAAGGAAGCAGAGGAAAAGGCTCGCATGGCCGCAGAGGAGCAGCAAAAGGAAATGGAAGCCAAAAGCCAGG  1666
            ||||||||||||.||.||.|||||||||.||||.||.|||||..||||||||||||||||||||||||||||.|
Sbjct 1702  CAAGAAGGAAGCTGAAGAGAAGGCTCGCCTGGCTGCTGAGGAAAAGCAAAAGGAAATGGAAGCCAAAAGCCAAG  1775

Query 1667  CTGAAGAAGGCGCATCTGGCAAAGCTGAGAAAAAGACGTCTGGAGAAACTAAGAATCAAGTCAATGGAACACGG  1740
            |||||.|||||.||.|..||||||..|||||||||||.||.||||||.|.||.|.|||||||||||||||||| 
Sbjct 1776  CTGAACAAGGCACAACCAGCAAAGGCGAGAAAAAGACATCAGGAGAAGCCAAAAGTCAAGTCAATGGAACACG-  1848

Query 1741  GCAAACAAAAGTGACAACCCTCGTGGGAAAAATTCCAAAGCCGAGAAGTCATCAGGAGAACAGCAACAGAATGG  1814
                 |||..||||.||||||||||||||.||.|||||||..||.|||   .||||.|||.||||.|||||.||
Sbjct 1849  -----CAAGGGTGATAACCCTCGTGGGAAGAACTCCAAAGGAGAAAAG---GCAGGCGAAAAGCAGCAGAACGG  1914

Query 1815  TGACTTCAAAGATGGTAAAAATAAGACAGACAAGAAGGATCACTCTAACATCGGAAATGATTCAAAGAAAACAG  1888
            ||||||.|||||.||||||||||||.|||||||||||||||||||.||||.|||||||||.|||||||||||||
Sbjct 1915  TGACTTGAAAGACGGTAAAAATAAGGCAGACAAGAAGGATCACTCCAACACCGGAAATGAGTCAAAGAAAACAG  1988

Query 1889  ATGATTCACAAGAG------------------------------------------------------------  1902
            |||.|.|| ||||.                                                            
Sbjct 1989  ATGGTACA-AAGAAGCGTTCTCATGGCTCACCTGCTCCGAGCACTAGTTCCACAAGTCGCATTACCTTGCCAGG  2061

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2062  AGACTACGGATAAAACATCATCCAGAAACTTCCTTGGAAGAAACCTGACCATCCCCAAGTCATCAAGCCTCCTT  2135

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2136  TGCGTCACTTTAAGCGTCCTGCTTATGCATCTAGCTCCTATGCACCTTCCGTCCCGAAGAAAACTGATGATCAT  2209

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2210  CCTGTAAGATACAAGATGCTGGATCAGCGGATCAAGATGAAAAAGATCCAGAACATCTCTCATCACTGGAACAA  2283

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2284  AAAATAGGAGTACCCAGGGATCCATGAAGTGCCTGTCGCTCGAAGACTCCAGGCTCCAGATCTACCACAGGGGA  2357

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2358  ATATGGTTTTGTGGAACTGAAGCAGGAAGCTGTAAACTGATAAACCTAAAGTTATTTCCTCATTTCCAGCTTTG  2431

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2432  CCCCCCAGAGTTTAGAGATGCCTTTAAATTAAATCTTAGCTCATCTAGGCCACAGACTGCCCACCCAAAGCTCT  2505

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2506  TGAGGTTCCCACCTGCTCTCCTCACTGTTGGTGGGACAGAAATCTTCCTAAGTCACCTCTTGTTGGCATGCCAT  2579

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2580  TGTTAGCTTTTCTATGACTTTACCAAGAAGTTTTACTTTGAGACTAAAATCATAGAGATGCAAGGGAATTCTCA  2653

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2654  CACCTGGAGAGAGCATCCGAAGGTTCAATTGGTTTTAAGACAAGCTTGCTCTGCCTGAGACTTGCATTGGGTCC  2727

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2728  TTGAGCTTTCCATGTGACATTTTCAAGTCTCAGTTTGTTTAACCTACTACTTTTCTGATGGAGATGGACTGTGG  2801

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2802  GTTTCAGGAAGCTATTGCCACACCCGCTGACTATAGGTACAGAGAAGCTTTAGTACAGGGCACTCCATGTTCAG  2875

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2876  GGAAGCAAGGAACCTTTTGTGATAGTCACAGAATCCTGGCTTTGATTAGAGAGTTCAGTTCATTTCCACAGACC  2949

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2950  ATAATTATCCAAGAAATAAGCTCCAGCATCCAGTGAGCACTGATAAGGTTGGGCAGCTCATATATAATGTAGTT  3023

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 3024  TGTTCAGATAATTGTTATACAAGCGAGAAATCACTGTGACTTTTTGATATGGAAGACAATCACAATTCTTAGTT  3097

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 3098  CCCTACCCAGTATTTGAGCAAGAAAAGCTGTCCGCAGCTTGGAAGTGTACCTCCATCTGGATTAGTTTAACTCA  3171

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 3172  CAGGTACTGTCTACTTGGTACCATGCAGAAACTTTCATGCAGAATGCAAAGAGCCACTTTGACTACACACTGAC  3245

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 3246  AAGGTTTGGGGGACCTTCCTGTCTCTTAAAACTTCCTGACTTAGTTTACAGGCCTCAGTGGTTCTTCTCTTTCA  3319

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 3320  TGGCTGATTGAGGGTAGGGTGTTGAGGATGTTTGTTCTTTCTGTGGTTTTTTTTTTCTCTTAAGATGTGATTTT  3393

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 3394  TTTTTTCAATCTTTGCTAAAATTTTAGTTCAATAAACATTCACATGTGGAGAGTCTACATTGCTTATAAATGCC  3467

Query 1903  --------------------------------------------------------------------  1902
                                                                                
Sbjct 3468  TACTATGTTTTACAAGCAGAAAATGAAAGATTATATTCTTATAGCAAATAAAAAATGCTTTGAATGGA  3535

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.