Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_06931
- Subject:
- XR_379758.3
- Aligned Length:
- 3905
- Identities:
- 2080
- Gaps:
- 1571
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTGCGCTCCGCGCGCGGCTCCGAGCGTCCCGTCCCGCCAGCGGCCTCGAGACCTGAGCAGCTAGGGAACAAACC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAGCGGTCCAGGGAGCCCCGAGCGCAGCGTAGAGCCAGGGTACGCTTCGAGGACCCGCGCAGCCCCGCTCGGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTCCGGGCCCTAGTCAGACAGCCAGGCAAGCGCAGCGCCACCCGGCCGAGCCCAGCGCAGCGCTCTGTAGCCTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCGCGCGCCACCGCCCGCGCCCCGCACCGGGGAATGCGCCCTCGGCGCGCAGGCCAGGGGGCGCCCGCAGCCCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCCCGGGGGAGGCGGCCCCGAGCGCCCCTGAGCCTTTCCATGGCCCGGGCTAGGGCCCGGGGCCTCGGCTGCTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACGTGCACGAAGCCAGGGGACCCAGTGAAGCCGAGTCCGCGGTGCGGATCCCGGCTCAGGCTAAGAGACAAGAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGCGCGGACAGGGCCGTGGCCCGGGGGGGGGGCAGCTAAAGCGGACCGGCCGGACGCGAACCTCTCCGCTGCTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CGGCGGCCACCGCTGCCCGGGCGCCCAGGCCCCGCCGCCGTGGACGAGGTGTCCACAGAACTGGAGCCTGCTTC 592
Query 1 -----------------------ATGCTTGTCGCCGGTCTTC-TTCTCTGGGCTTCCCTACTGACCGGGGCCTG 50
||||||||| .|.|.|||| |.||||||||||||||.||||||||||||||
Sbjct 593 CTGGGCCCCAGGCCCCTCCCACGATGCTTGTC-ACTGCCTTCATCCTCTGGGCTTCCCTGCTGACCGGGGCCTG 665
Query 51 GCCATCCTTCCCC-ACCCAGGACCACCTCCCGGCCACGCCCCGGGTCCGGCTCTCATTCAAAGAGCTGAAGGCC 123
||| |.||.|||| |.|||||||||.||.||.|||||.||..|.|||||.||.|||||||||||.||.||||||
Sbjct 666 GCC-TGCTACCCCTATCCAGGACCAGCTTCCAGCCACACCTAGAGTCCGACTGTCATTCAAAGAACTTAAGGCC 738
Query 124 ACAGGCACCGCCCACTTCTTCAACTTCCTGCTCAACACAACCGACTACCGAATCTTGCTCAAGGACGAGGACCA 197
||.||.||||||||||||||||||||.|||||||||||.||.||||||.|||||.||||||||||.||||||||
Sbjct 739 ACCGGTACCGCCCACTTCTTCAACTTTCTGCTCAACACTACAGACTACAGAATCCTGCTCAAGGATGAGGACCA 812
Query 198 CGACCGCATGTACGTGGGCAGCAAGGACTACGTGCTGTCCCTGGACCTGCACGACATCAACCGCGAGCCCCTCA 271
.|||||||||||.||||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||.|
Sbjct 813 TGACCGCATGTATGTGGGCAGCAAGGACTACGTGCTGTCCCTGGACCTGCATGACATCAACCGAGAGCCCCTTA 886
Query 272 TTATACACTGGGCAGCCTCCCCACAGCGCATCGAGGAATGCGTGCTCTCAGGCAAGGATGTCAACGGCGAGTGT 345
||||.||.||||||||||||||.||||||||.|||||.|||.|.||.|||||||||||||.|||.||.||||||
Sbjct 887 TTATCCATTGGGCAGCCTCCCCGCAGCGCATTGAGGAGTGCATACTGTCAGGCAAGGATGGCAATGGAGAGTGT 960
Query 346 GGGAACTTCGTCAGGCTCATCCAGCCCTGGAACCGAACACACCTGTATGTGTGCGGGACAGGTGCCTACAACCC 419
||.|||||||||.|||||||||||||.||||||||||||||||||||||||||.|||||.||||||||||||||
Sbjct 961 GGTAACTTCGTCCGGCTCATCCAGCCTTGGAACCGAACACACCTGTATGTGTGTGGGACCGGTGCCTACAACCC 1034
Query 420 CATGTGCACCTATGTGAACCGCGGACGCCGCGCCCAGGCCACACCATGGACCCAGACTCAGGCGGTCAGAGGCC 493
|||||||||||||||||||||.||.||.|||||.||||||..|||.||||||||||..||||.|||||||||||
Sbjct 1035 CATGTGCACCTATGTGAACCGTGGCCGTCGCGCACAGGCCCTACCGTGGACCCAGATGCAGGTGGTCAGAGGCC 1108
Query 494 GCGGCAGCAGAGCCACGGATGGTGCCCTCCGCCCGATGCCCACAGCCCCACGCCAGGATTACATCTTCTACCTG 567
|.||||||||.|||||.|||||||||..||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 1109 GAGGCAGCAGGGCCACCGATGGTGCCGACCGCCCGACGCCCACAGCCCCACGCCAGGATTACATCTTCTACCTG 1182
Query 568 GAGCCTGAGCGACTCGAGTCAGGGAAGGGCAAGTGTCCGTACGATCCCAAGCTGGACACAGCATCGGCCCTCAT 641
|||||||||..|||.||||||||.||.|||||.|||||.||.||.|||||||||||||||||.||.||||||||
Sbjct 1183 GAGCCTGAGAAACTGGAGTCAGGAAAAGGCAAATGTCCCTATGACCCCAAGCTGGACACAGCCTCAGCCCTCAT 1256
Query 642 CAATGAGGAGCTCTATGCTGGTGTGTACATCGATTTTATGGGCACTGATGCAGCCATCTTCCGCACACTTGGAA 715
|||||||||.||||||||.||.||||||||||||||||||||.||.|||||||||||.||||||||.||.||.|
Sbjct 1257 CAATGAGGAACTCTATGCAGGAGTGTACATCGATTTTATGGGTACCGATGCAGCCATTTTCCGCACGCTGGGGA 1330
Query 716 AGCAGACAGCCATGCGCACGGATCAGTACAACTCCCGGTGGCTGAACGACCCGTCGTTCATCCATGCTGAGCTC 789
|||||||||||||||||||.|||||||||||||||||||||||.||.||.||.||.|||||.||||||||||||
Sbjct 1331 AGCAGACAGCCATGCGCACAGATCAGTACAACTCCCGGTGGCTCAATGATCCTTCCTTCATACATGCTGAGCTC 1404
Query 790 ATTCCTGACAGTGCGGAGCGCAATGATGATAAGCTTTACTTCTTCTTCCGTGAGCGGTCGGCAGAGGCGCCGCA 863
||.|||||||||||.|||||||||||.|||||.||.||||||||||||||.|||||.||||||||||||||.||
Sbjct 1405 ATCCCTGACAGTGCAGAGCGCAATGACGATAAACTCTACTTCTTCTTCCGAGAGCGCTCGGCAGAGGCGCCACA 1478
Query 864 GAGCCCCGCGGTGTACGCCCGCATCGGGCGCATTTGCCTGAACGATGACGGTGGTCACTGTTGCCTGGTCAACA 937
||.|||.||.|||||.|||||||||||||||||.|||||.||||||||||||||.||.||.|||||||||||||
Sbjct 1479 GAACCCTGCTGTGTATGCCCGCATCGGGCGCATCTGCCTCAACGATGACGGTGGCCATTGCTGCCTGGTCAACA 1552
Query 938 AGTGGAGCACATTCCTGAAGGCGCGGCTCGTCTGCTCTGTCCCGGGCGAGGATGGCATTGAGACTCACTTTGAT 1011
||||||||||||||||||||||.||||||||||||||.||.||.|||||||||||.||||||||.|||||.||.
Sbjct 1553 AGTGGAGCACATTCCTGAAGGCTCGGCTCGTCTGCTCCGTGCCAGGCGAGGATGGTATTGAGACCCACTTCGAC 1626
Query 1012 GAGCTCCAGGACGTGTTTGTCCAGCAGACCCAGGACGTGAGGAACCCTGTCATTTACGCTGTCTTTACCTCCTC 1085
||.||||||||.||||||||||||||||||||||||||.||||||||.||||||||.||||||||||||||.||
Sbjct 1627 GAACTCCAGGATGTGTTTGTCCAGCAGACCCAGGACGTCAGGAACCCAGTCATTTATGCTGTCTTTACCTCTTC 1700
Query 1086 TGGCTCCGTGTTCCGAGGCTCTGCCGTGTGTGTCTACTCCATGGCTGATATTCGCATGGTCTTCAACGGGCCCT 1159
.|||||.|||||||||||.|||||.||||||||||||||||||||||||||.||||||||||||||.|||||.|
Sbjct 1701 AGGCTCTGTGTTCCGAGGGTCTGCAGTGTGTGTCTACTCCATGGCTGATATCCGCATGGTCTTCAATGGGCCTT 1774
Query 1160 TTGCCCACAAAGAGGGGCCCAACTACCAGTGGATGCCCTTCTCAGGGAAGATGCCCTACCCACGGCCGGGCACG 1233
||||.|||||.|||||.||||||||.||.|||||||||||||||||.|||||||||||.||.|||||.|||||.
Sbjct 1775 TTGCTCACAAGGAGGGCCCCAACTATCAATGGATGCCCTTCTCAGGAAAGATGCCCTATCCTCGGCCTGGCACA 1848
Query 1234 TGCCCTGGTGGAACCTTCACGCCATCTATGAAGTCCACCAAGGATTATCCTGATGAGGTGATCAACTTCATGCG 1307
|||||||||||||||||||||||.||.|||||||||||.|||||.||.||||||||.|||||||||||||||||
Sbjct 1849 TGCCCTGGTGGAACCTTCACGCCCTCGATGAAGTCCACTAAGGACTACCCTGATGAAGTGATCAACTTCATGCG 1922
Query 1308 CAGCCACCCACTCATGTACCAGGCCGTGTACCCTCTGCAGCGGCGGCCCCTGGTAGTCCGCACAGGTGCTCCCT 1381
||..||.||.|||||||||||||||||.|||||.||.||||||||.||||||||.|||||.|||||.|||||||
Sbjct 1923 CACTCATCCGCTCATGTACCAGGCCGTCTACCCGCTCCAGCGGCGACCCCTGGTGGTCCGTACAGGCGCTCCCT 1996
Query 1382 ACCGCCTTACCACTATTGCCGTGGACCAGGTGGATGCAGCCGACGGGCGCTATGAGGTGCTTTTCCTGGGCACA 1455
|||||||.||||||.|.||.||||||||||||||||||||.||.||.||||||| |
Sbjct 1997 ACCGCCTCACCACTGTCGCTGTGGACCAGGTGGATGCAGCTGATGGACGCTATG-------------------A 2051
Query 1456 GACCGCGGGACAGTGCAGAAGGTCATTGTGCTGCCCAAGGATGACCAGGAGATGGAGGAGCTCATGCTGGAGGA 1529
||||||||||||||||||||||||||.||||||||||||||.|||||||||.||||.|||||.|||||.|||||
Sbjct 2052 GACCGCGGGACAGTGCAGAAGGTCATCGTGCTGCCCAAGGACGACCAGGAGGTGGAAGAGCTGATGCTAGAGGA 2125
Query 1530 GGTGGAGGTCTTCAAGGATCCAGCACCCGTCAAGACCATGACCATCTCTTCTAAGAGGCAACAACTCTACGTGG 1603
.|||||||||||||||||.||||||||.||.||||||||||||||||||||.||||||||||||||.||.||||
Sbjct 2126 AGTGGAGGTCTTCAAGGAACCAGCACCTGTTAAGACCATGACCATCTCTTCCAAGAGGCAACAACTGTATGTGG 2199
Query 1604 CGTCAGCCGTGGGTGTCACACACCTGAGCCTGCACCGCTGCCAGGCGTATGGGGCTGCCTGTGCTGACTGCTGC 1677
|.||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||||||||.|||||||||
Sbjct 2200 CCTCAGCCGTGGGTGTCACACACCTGAGCCTGCACCGCTGCCAGGCCTATGGAGCTGCCTGTGCCGACTGCTGC 2273
Query 1678 CTTGCCCGGGACCCTTACTGTGCCTGGGATGGCCAGGCCTGCTCCCGCTATACAGCATCCTCCAAGAGGCGGAG 1751
||||||||.||.||.|||||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||
Sbjct 2274 CTTGCCCGCGATCCCTACTGTGCCTGGGATGGCCAGGCCTGCTCTCGCTACACAGCATCCTCCAAGAGGCGGAG 2347
Query 1752 CCGCCGGCAGGACGTCCGGCACGGAAACCCCATCAGGCAGTGCCGTGGGTTCAACTCCAATGCCAACAAGAATG 1825
.||||||||.||.|||||.|||||.|||||.|||||.|||||||||||.|||||.||||||||.||||||||||
Sbjct 2348 TCGCCGGCAAGATGTCCGCCACGGGAACCCTATCAGACAGTGCCGTGGTTTCAATTCCAATGCAAACAAGAATG 2421
Query 1826 CCGTGGAGTCTGTGCAGTATGGCGTGGCCGGCAGCGCAGCCTTCCTTGAGTGCCAGCCCCGCTCGCCCCAAGCC 1899
||||.||||||||||||||.||.|||||||||||||||||.|||||||||||.|||||||||||.||.||||||
Sbjct 2422 CCGTAGAGTCTGTGCAGTACGGAGTGGCCGGCAGCGCAGCTTTCCTTGAGTGTCAGCCCCGCTCACCTCAAGCC 2495
Query 1900 ACTGTTAAGTGGCTGTTCCAGCGAGATCCTGGTGACCGGCGCCGAGAGATTCGTGCAGAGGACCGCTTCCTGCG 1973
|||||.|||||||||||||||||||||||..||||.||||||||.||||||||.||||||||||||||||||||
Sbjct 2496 ACTGTCAAGTGGCTGTTCCAGCGAGATCCCAGTGATCGGCGCCGTGAGATTCGCGCAGAGGACCGCTTCCTGCG 2569
Query 1974 CACAGAGCAGGGCTTGTTGCTCCGTGCACTGCAGCTCAGCGATCGTGGCCTCTACTCCTGCACAGCCACTGAGA 2047
.|||||||||||..|||||||.||.||.||||||||..|.||.||.|||||||||||||||||.||||||||||
Sbjct 2570 TACAGAGCAGGGGCTGTTGCTTCGCGCCCTGCAGCTTGGTGACCGCGGCCTCTACTCCTGCACGGCCACTGAGA 2643
Query 2048 ACAACTTTAAGCACGTCGTCACACGAGTGCAGCTGCATGTACTGGGCCGGGACGCCGTCCATGCTGCCCTCTTC 2121
|||||||.||||||.|||||||.||.||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 2644 ACAACTTCAAGCACATCGTCACGCGGGTGCAGCTGCATGTACTGGGCCGGGATGCCGTCCATGCTGCCCTCTTC 2717
Query 2122 CCACCACTGTCCATGAGCGCCCCGCCACCCCCAGGCGCAGGCCCCCCAACGCCTCCTTACCAGGAGTTAGCCCA 2195
||.||||||.|..||||||.|||.|||||.||.|||.|||||||.|||||||||||||||||||||.|.|||||
Sbjct 2718 CCCCCACTGGCTGTGAGCGTCCCTCCACCTCCTGGCACAGGCCCTCCAACGCCTCCTTACCAGGAGCTGGCCCA 2791
Query 2196 GCTGCTGGCCCAGCCAGAAGTGGGCCTCATCCACCAGTACTGCCAGGGTTACTGGCGCCATGTGCCCCCCAGCC 2269
|||.||.||||||||.|||||||||||||||||.||||||||||||||||||||||||||.|||||||||||.|
Sbjct 2792 GCTCCTAGCCCAGCCGGAAGTGGGCCTCATCCATCAGTACTGCCAGGGTTACTGGCGCCACGTGCCCCCCAGAC 2865
Query 2270 CCAGGGAGGCTCCAGGGGCACCCCGGTCTCCTGAGCCCCAGGACCAGAAAAAGCCCCGGAACCGCCGGCACCAC 2343
||||||||||.|||||.||||...||.|||||||.|.||||||||||||||||||..||||||||||.||||||
Sbjct 2866 CCAGGGAGGCGCCAGGAGCACTTAGGCCTCCTGAACTCCAGGACCAGAAAAAGCCGAGGAACCGCCGCCACCAC 2939
Query 2344 CCTCCGGACACA-------------------------------------------------------------- 2355
||||||||||||
Sbjct 2940 CCTCCGGACACATGAGGCCAGCTGCTGGAGGCCTGCATAGGACCAGCCTAGCCCCTCATCCCTTTTAATATAAA 3013
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3014 AGATATATATATATATAAAAATATCTATATTCTATACATACCCTACCCCTGCAAAGACAGTATTTATTGGTGGG 3087
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3088 TTGTATATAGCCTGCCTAGGTGGCAGCATTATCCAGAACTTAGACCCGTGTTGGTCAGCAATGGCACATGACTG 3161
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3162 AGCAATGCCCAGCCCGGCCTAGGGAGTTGCCAGGGCCAGCCCGAGACCACACAGTCCCCAGACTCCATGGAGAT 3235
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3236 CTCCCTGCTGAAGAGCTGTCAAGATCTACAAAACACAGGGAGGGAGCGAGCCCTTCTTGTCAGGGCATGGACCG 3309
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3310 CATGCCTTTGCTGATGCGCGTTGTCATCTGTGCCTCGGCATAGACGTGGACACCAGGATTGCTGTGGAGTCTGG 3383
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3384 GGTGGGGGCTCAGGGCACTCGGAGGAGGGAGAAAGGGGCCATCCCAGGAGACAGGCCCCTGCCTGGGACAGAGG 3457
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3458 TGCCTAGTCAAGGCCAACCTTTCCCAGGTATTTTTTCCCTATTTATTGGGGACAGAAGAGACGTCTGTCTGGGT 3531
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3532 GAGGCAGAACCTTCTCTTCTCCCTTCCTTGCCTGTTGTCCTGGCAGGTCCAGCCCACTCTACCTCCTTAGCTTT 3605
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3606 TCCTGTGCCGCCTCGACTCATGGGTGGGGCTGGGTGCGGGCATGGCTTAAAAGAACCCCCCCCCCCGCCCTGAG 3679
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3680 GATACACGGGCCGTGGTGGAGGCCCAGGGCCTGTCTGGCATCCCCAAGTCTCCCTTCTGCCTACTGCCTCAGGT 3753
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3754 GACGGGTGTAACTAGCTCTGGAGGCAGTGGGGTAGATGGTCTGGGGGAGGGGTGTCCTGCAGCCTCTGCTACCC 3827
Query 2356 --------------------------------------------------------- 2355
Sbjct 3828 AGGCCACAGCCACTCTTGGGTTCCATCTTGCTAATAAATGCTGGCTCTGGGACTAGA 3884
