Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_06931
- Subject:
- XR_871078.2
- Aligned Length:
- 3945
- Identities:
- 2099
- Gaps:
- 1592
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTGCGCTCCGCGCGCGGCTCCGAGCGTCCCGTCCCGCCAGCGGCCTCGAGACCTGAGCAGCTAGGGAACAAACC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAGCGGTCCAGGGAGCCCCGAGCGCAGCGTAGAGCCAGGGTACGCTTCGAGGACCCGCGCAGCCCCGCTCGGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTCCGGGCCCTAGTCAGACAGCCAGGCAAGCGCAGCGCCACCCGGCCGAGCCCAGCGCAGCGCTCTGTAGCCTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCGCGCGCCACCGCCCGCGCCCCGCACCGGGGAATGCGCCCTCGGCGCGCAGGCCAGGGGGCGCCCGCAGCCCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCCCGGGGGAGGCGGCCCCGAGCGCCCCTGAGCCTTTCCATGGCCCGGGCTAGGGCCCGGGGCCTCGGCTGCTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACGTGCACGAAGCCAGGGGACCCAGTGAAGCCGAGTCCGCGGTGCGGATCCCGGCTCAGGCTAAGAGACAAGAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGCGCGGACAGGGCCGTGGCCCGGGGGGGGGGCAGCTAAAGCGGACCGGCCGGACGCGAACCTCTCCGCTGCTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CGGCGGCCACCGCTGCCCGGGCGCCCAGGCCCCGCCGCCGTGGACGAGGTGTCCACAGAACTGGAGCCTGCTTC 592
Query 1 -----------------------ATGCTTGTCGCCGGTCTTC-TTCTCTGGGCTTCCCTACTGACCGGGGCCTG 50
||||||||| .|.|.|||| |.||||||||||||||.||||||||||||||
Sbjct 593 CTGGGCCCCAGGCCCCTCCCACGATGCTTGTC-ACTGCCTTCATCCTCTGGGCTTCCCTGCTGACCGGGGCCTG 665
Query 51 GCCATCCTTCCCC-ACCCAGGACCACCTCCCGGCCACGCCCCGGGTCCGGCTCTCATTCAAAGAGCTGAAGGCC 123
||| |.||.|||| |.|||||||||.||.||.|||||.||..|.|||||.||.|||||||||||.||.||||||
Sbjct 666 GCC-TGCTACCCCTATCCAGGACCAGCTTCCAGCCACACCTAGAGTCCGACTGTCATTCAAAGAACTTAAGGCC 738
Query 124 ACAGGCACCGCCCACTTCTTCAACTTCCTGCTCAACACAACCGACTACCGAATCTTGCTCAAGGACGAGGACCA 197
||.||.||||||||||||||||||||.|||||||||||.||.||||||.|||||.||||||||||.||||||||
Sbjct 739 ACCGGTACCGCCCACTTCTTCAACTTTCTGCTCAACACTACAGACTACAGAATCCTGCTCAAGGATGAGGACCA 812
Query 198 CGACCGCATGTACGTGGGCAGCAAGGACTACGTGCTGTCCCTGGACCTGCACGACATCAACCGCGAGCCCCTCA 271
.|||||||||||.||||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||.|
Sbjct 813 TGACCGCATGTATGTGGGCAGCAAGGACTACGTGCTGTCCCTGGACCTGCATGACATCAACCGAGAGCCCCTTA 886
Query 272 TTATACACTGGGCAGCCTCCCCACAGCGCATCGAGGAATGCGTGCTCTCAGGCAAGGATGTCAACGGCGAGTGT 345
||||.||.||||||||||||||.||||||||.|||||.|||.|.||.|||||||||||||.|||.||.||||||
Sbjct 887 TTATCCATTGGGCAGCCTCCCCGCAGCGCATTGAGGAGTGCATACTGTCAGGCAAGGATGGCAATGGAGAGTGT 960
Query 346 GGGAACTTCGTCAGGCTCATCCAGCCCTGGAACCGAACACACCTGTATGTGTGCGGGACAGGTGCCTACAACCC 419
||.|||||||||.|||||||||||||.||||||||||||||||||||||||||.|||||.||||||||||||||
Sbjct 961 GGTAACTTCGTCCGGCTCATCCAGCCTTGGAACCGAACACACCTGTATGTGTGTGGGACCGGTGCCTACAACCC 1034
Query 420 CATGTGCACCTATGTGAACCGCGGACGCCGCGCCCAGGCCACACCATGGACCCAGACTCAGGCGGTCAGAGGCC 493
|||||||||||||||||||||.||.||.|||||.||||||..|||.||||||||||..||||.|||||||||||
Sbjct 1035 CATGTGCACCTATGTGAACCGTGGCCGTCGCGCACAGGCCCTACCGTGGACCCAGATGCAGGTGGTCAGAGGCC 1108
Query 494 GCGGCAGCAGAGCCACGGATGGTGCCCTCCGCCCGATGCCCACAGCCCCACGCCAGGATTACATCTTCTACCTG 567
|.||||||||.|||||.|||||||||..||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 1109 GAGGCAGCAGGGCCACCGATGGTGCCGACCGCCCGACGCCCACAGCCCCACGCCAGGATTACATCTTCTACCTG 1182
Query 568 GAGCCTGAGCGACTCGAGTCAGGGAAGGGCAAGTGTCCGTACGATCCCAAGCTGGACACAGCATCGGCCCTCAT 641
|||||||||..|||.||||||||.||.|||||.|||||.||.||.|||||||||||||||||.||.||||||||
Sbjct 1183 GAGCCTGAGAAACTGGAGTCAGGAAAAGGCAAATGTCCCTATGACCCCAAGCTGGACACAGCCTCAGCCCTCAT 1256
Query 642 CAATGAGGAGCTCTATGCTGGTGTGTACATCGATTTTATGGGCACTGATGCAGCCATCTTCCGCACACTTGGAA 715
|||||||||.||||||||.||.||||||||||||||||||||.||.|||||||||||.||||||||.||.||.|
Sbjct 1257 CAATGAGGAACTCTATGCAGGAGTGTACATCGATTTTATGGGTACCGATGCAGCCATTTTCCGCACGCTGGGGA 1330
Query 716 AGCAGACAGCCATGCGCACGGATCAGTACAACTCCCGGTGGCTGAACGACCCGTCGTTCATCCATGCTGAGCTC 789
|||||||||||||||||||.|||||||||||||||||||||||.||.||.||.||.|||||.||||||||||||
Sbjct 1331 AGCAGACAGCCATGCGCACAGATCAGTACAACTCCCGGTGGCTCAATGATCCTTCCTTCATACATGCTGAGCTC 1404
Query 790 ATTCCTGACAGTGCGGAGCGCAATGATGATAAGCTTTACTTCTTCTTCCGTGAGCGGTCGGCAGAGGCGCCGCA 863
||.|||||||||||.|||||||||||.|||||.||.||||||||||||||.|||||.||||||||||||||.||
Sbjct 1405 ATCCCTGACAGTGCAGAGCGCAATGACGATAAACTCTACTTCTTCTTCCGAGAGCGCTCGGCAGAGGCGCCACA 1478
Query 864 GAGCCCCGCGGTGTACGCCCGCATCGGGCGCATTTGCCTGAACGATGACGGTGGTCACTGTTGCCTGGTCAACA 937
||.|||.||.|||||.|||||||||||||||||.|||||.||||||||||||||.||.||.|||||||||||||
Sbjct 1479 GAACCCTGCTGTGTATGCCCGCATCGGGCGCATCTGCCTCAACGATGACGGTGGCCATTGCTGCCTGGTCAACA 1552
Query 938 AGTGGAGCACATTCCTGAAGGCGCGGCTCGTCTGCTCTGTCCCGGGCGAGGATGGCATTGAGACTCACTTTGAT 1011
||||||||||||||||||||||.||||||||||||||.||.||.|||||||||||.||||||||.|||||.||.
Sbjct 1553 AGTGGAGCACATTCCTGAAGGCTCGGCTCGTCTGCTCCGTGCCAGGCGAGGATGGTATTGAGACCCACTTCGAC 1626
Query 1012 GAGCTCCAGGACGTGTTTGTCCAGCAGACCCAGGACGTGAGGAACCCTGTCATTTACGCTGTCTTTACCTCCTC 1085
||.||||||||.||||||||||||||||||||||||||.||||||||.||||||||.||||||||||||||.||
Sbjct 1627 GAACTCCAGGATGTGTTTGTCCAGCAGACCCAGGACGTCAGGAACCCAGTCATTTATGCTGTCTTTACCTCTTC 1700
Query 1086 TGGCTCCGTGTTCCGAGGCTCTGCCGTGTGTGTCTACTCCATGGCTGATATTCGCATGGTCTTCAACGGGCCCT 1159
.|||||.|||||||||||.|||||.||||||||||||||||||||||||||.||||||||||||||.|||||.|
Sbjct 1701 AGGCTCTGTGTTCCGAGGGTCTGCAGTGTGTGTCTACTCCATGGCTGATATCCGCATGGTCTTCAATGGGCCTT 1774
Query 1160 TTGCCCACAAAGAGGGGCCCAACTACCAGTGGATGCCCTTCTCAGGGAAGATGCCCTACCCACGGCCGGGCACG 1233
||||.|||||.|||||.||||||||.||.|||||||||||||||||.|||||||||||.||.|||||.|||||.
Sbjct 1775 TTGCTCACAAGGAGGGCCCCAACTATCAATGGATGCCCTTCTCAGGAAAGATGCCCTATCCTCGGCCTGGCACA 1848
Query 1234 TGCCCTGGTGGAACCTTCACGCCATCTATGAAGTCCACCAAGGATTATCCTGATGAGGTGATCAACTTCATGCG 1307
|||||||||||||||||||||||.||.|||||||||||.|||||.||.||||||||.|||||||||||||||||
Sbjct 1849 TGCCCTGGTGGAACCTTCACGCCCTCGATGAAGTCCACTAAGGACTACCCTGATGAAGTGATCAACTTCATGCG 1922
Query 1308 CAGCCACCCACTCATGTACCAGGCCGTGTACCCTCTGCAGCGGCGGCCCCTGGTAGTCCGCACAGGTGCTCCCT 1381
||..||.||.|||||||||||||||||.|||||.||.||||||||.||||||||.|||||.|||||.|||||||
Sbjct 1923 CACTCATCCGCTCATGTACCAGGCCGTCTACCCGCTCCAGCGGCGACCCCTGGTGGTCCGTACAGGCGCTCCCT 1996
Query 1382 ACCGCCTTACCACTATTGCCGTGGACCAGGTGGATGCAGCCGACGGGCGCTATGAGGTGCTTTTCCTGGGCA-- 1453
|||||||.||||||.|.||.||||||||||||||||||||.||.||.|||||||||||||||||||||||||
Sbjct 1997 ACCGCCTCACCACTGTCGCTGTGGACCAGGTGGATGCAGCTGATGGACGCTATGAGGTGCTTTTCCTGGGCACA 2070
Query 1454 --------------------------------------CAGACCGCGGGACAGTGCAGAAGGTCATTGTGCTGC 1489
||||||||||||||||||||||||||||.|||||||
Sbjct 2071 GCATCCTCAGCCCCACTGAGGTCCTGCCCGGCCCGTTCCAGACCGCGGGACAGTGCAGAAGGTCATCGTGCTGC 2144
Query 1490 CCAAGGATGACCAGGAGATGGAGGAGCTCATGCTGGAGGAGGTGGAGGTCTTCAAGGATCCAGCACCCGTCAAG 1563
|||||||.|||||||||.||||.|||||.|||||.|||||.|||||||||||||||||.||||||||.||.|||
Sbjct 2145 CCAAGGACGACCAGGAGGTGGAAGAGCTGATGCTAGAGGAAGTGGAGGTCTTCAAGGAACCAGCACCTGTTAAG 2218
Query 1564 ACCATGACCATCTCTTCTAAGAGGCAACAACTCTACGTGGCGTCAGCCGTGGGTGTCACACACCTGAGCCTGCA 1637
|||||||||||||||||.||||||||||||||.||.|||||.||||||||||||||||||||||||||||||||
Sbjct 2219 ACCATGACCATCTCTTCCAAGAGGCAACAACTGTATGTGGCCTCAGCCGTGGGTGTCACACACCTGAGCCTGCA 2292
Query 1638 CCGCTGCCAGGCGTATGGGGCTGCCTGTGCTGACTGCTGCCTTGCCCGGGACCCTTACTGTGCCTGGGATGGCC 1711
||||||||||||.|||||.|||||||||||.|||||||||||||||||.||.||.|||||||||||||||||||
Sbjct 2293 CCGCTGCCAGGCCTATGGAGCTGCCTGTGCCGACTGCTGCCTTGCCCGCGATCCCTACTGTGCCTGGGATGGCC 2366
Query 1712 AGGCCTGCTCCCGCTATACAGCATCCTCCAAGAGGCGGAGCCGCCGGCAGGACGTCCGGCACGGAAACCCCATC 1785
||||||||||.|||||.|||||||||||||||||||||||.||||||||.||.|||||.|||||.|||||.|||
Sbjct 2367 AGGCCTGCTCTCGCTACACAGCATCCTCCAAGAGGCGGAGTCGCCGGCAAGATGTCCGCCACGGGAACCCTATC 2440
Query 1786 AGGCAGTGCCGTGGGTTCAACTCCAATGCCAACAAGAATGCCGTGGAGTCTGTGCAGTATGGCGTGGCCGGCAG 1859
||.|||||||||||.|||||.||||||||.||||||||||||||.||||||||||||||.||.|||||||||||
Sbjct 2441 AGACAGTGCCGTGGTTTCAATTCCAATGCAAACAAGAATGCCGTAGAGTCTGTGCAGTACGGAGTGGCCGGCAG 2514
Query 1860 CGCAGCCTTCCTTGAGTGCCAGCCCCGCTCGCCCCAAGCCACTGTTAAGTGGCTGTTCCAGCGAGATCCTGGTG 1933
||||||.|||||||||||.|||||||||||.||.|||||||||||.|||||||||||||||||||||||..|||
Sbjct 2515 CGCAGCTTTCCTTGAGTGTCAGCCCCGCTCACCTCAAGCCACTGTCAAGTGGCTGTTCCAGCGAGATCCCAGTG 2588
Query 1934 ACCGGCGCCGAGAGATTCGTGCAGAGGACCGCTTCCTGCGCACAGAGCAGGGCTTGTTGCTCCGTGCACTGCAG 2007
|.||||||||.||||||||.||||||||||||||||||||.|||||||||||..|||||||.||.||.||||||
Sbjct 2589 ATCGGCGCCGTGAGATTCGCGCAGAGGACCGCTTCCTGCGTACAGAGCAGGGGCTGTTGCTTCGCGCCCTGCAG 2662
Query 2008 CTCAGCGATCGTGGCCTCTACTCCTGCACAGCCACTGAGAACAACTTTAAGCACGTCGTCACACGAGTGCAGCT 2081
||..|.||.||.|||||||||||||||||.|||||||||||||||||.||||||.|||||||.||.||||||||
Sbjct 2663 CTTGGTGACCGCGGCCTCTACTCCTGCACGGCCACTGAGAACAACTTCAAGCACATCGTCACGCGGGTGCAGCT 2736
Query 2082 GCATGTACTGGGCCGGGACGCCGTCCATGCTGCCCTCTTCCCACCACTGTCCATGAGCGCCCCGCCACCCCCAG 2155
||||||||||||||||||.|||||||||||||||||||||||.||||||.|..||||||.|||.|||||.||.|
Sbjct 2737 GCATGTACTGGGCCGGGATGCCGTCCATGCTGCCCTCTTCCCCCCACTGGCTGTGAGCGTCCCTCCACCTCCTG 2810
Query 2156 GCGCAGGCCCCCCAACGCCTCCTTACCAGGAGTTAGCCCAGCTGCTGGCCCAGCCAGAAGTGGGCCTCATCCAC 2229
||.|||||||.|||||||||||||||||||||.|.||||||||.||.||||||||.|||||||||||||||||.
Sbjct 2811 GCACAGGCCCTCCAACGCCTCCTTACCAGGAGCTGGCCCAGCTCCTAGCCCAGCCGGAAGTGGGCCTCATCCAT 2884
Query 2230 CAGTACTGCCAGGGTTACTGGCGCCATGTGCCCCCCAGCCCCAGGGAGGCTCCAGGGGCACCCCGGTCTCCTGA 2303
||||||||||||||||||||||||||.|||||||||||.|||||||||||.|||||.||||...||.|||||||
Sbjct 2885 CAGTACTGCCAGGGTTACTGGCGCCACGTGCCCCCCAGACCCAGGGAGGCGCCAGGAGCACTTAGGCCTCCTGA 2958
Query 2304 GCCCCAGGACCAGAAAAAGCCCCGGAACCGCCGGCACCACCCTCCGGACACA---------------------- 2355
.|.||||||||||||||||||..||||||||||.||||||||||||||||||
Sbjct 2959 ACTCCAGGACCAGAAAAAGCCGAGGAACCGCCGCCACCACCCTCCGGACACATGAGGCCAGCTGCTGGAGGCCT 3032
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3033 GCATAGGACCAGCCTAGCCCCTCATCCCTTTTAATATAAAAGATATATATATATATAAAAATATCTATATTCTA 3106
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3107 TACATACCCTACCCCTGCAAAGACAGTATTTATTGGTGGGTTGTATATAGCCTGCCTAGGTGGCAGCATTATCC 3180
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3181 AGAACTTAGACCCGTGTTGGTCAGCAATGGCACATGACTGAGCAATGCCCAGCCCGGCCTAGGGAGTTGCCAGG 3254
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3255 GCCAGCCCGAGACCACACAGTCCCCAGACTCCATGGAGATCTCCCTGCTGAAGAGCTGTCAAGATCTACAAAAC 3328
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3329 ACAGGGAGGGAGCGAGCCCTTCTTGTCAGGGCATGGACCGCATGCCTTTGCTGATGCGCGTTGTCATCTGTGCC 3402
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3403 TCGGCATAGACGTGGACACCAGGATTGCTGTGGAGTCTGGGGTGGGGGCTCAGGGCACTCGGAGGAGGGAGAAA 3476
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3477 GGGGCCATCCCAGGAGACAGGCCCCTGCCTGGGACAGAGGTGCCTAGTCAAGGCCAACCTTTCCCAGGTATTTT 3550
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3551 TTCCCTATTTATTGGGGACAGAAGAGACGTCTGTCTGGGTGAGGCAGAACCTTCTCTTCTCCCTTCCTTGCCTG 3624
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3625 TTGTCCTGGCAGGTCCAGCCCACTCTACCTCCTTAGCTTTTCCTGTGCCGCCTCGACTCATGGGTGGGGCTGGG 3698
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3699 TGCGGGCATGGCTTAAAAGAACCCCCCCCCCCGCCCTGAGGATACACGGGCCGTGGTGGAGGCCCAGGGCCTGT 3772
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3773 CTGGCATCCCCAAGTCTCCCTTCTGCCTACTGCCTCAGGTGACGGGTGTAACTAGCTCTGGAGGCAGTGGGGTA 3846
Query 2356 -------------------------------------------------------------------------- 2355
Sbjct 3847 GATGGTCTGGGGGAGGGGTGTCCTGCAGCCTCTGCTACCCAGGCCACAGCCACTCTTGGGTTCCATCTTGCTAA 3920
Query 2356 ----------------------- 2355
Sbjct 3921 TAAATGCTGGCTCTGGGACTAGA 3943
