Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_06943
- Subject:
- XR_001752587.1
- Aligned Length:
- 4842
- Identities:
- 1346
- Gaps:
- 3411
Alignment
Query 1 --------------------ATGAGCTGCCCCGTGCCCGCCTGCTGCGCGCTGCTGCTAGTCCTGGGGCTCTGC 54
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGTCCGAGCCGCCGCCGCCATGAGCTGCCCCGTGCCCGCCTGCTGCGCGCTGCTGCTAGTCCTGGGGCTCTGC 74
Query 55 CGGGCGCGTCCCCGGAACGCACTGCTGCTCCTCGCGGATGACGGAGGCTTTGAGAGTGGCGCGTACAACAACAG 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CGGGCGCGTCCCCGGAACGCACTGCTGCTCCTCGCGGATGACGGAGGCTTTGAGAGTGGCGCGTACAACAACAG 148
Query 129 CGCCATCGCCACCCCGCACCTGGACGCCTTGGCCCGCCGCAGCCTCCTCTTTCGCAATGCCTTCACCTCGGTCA 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CGCCATCGCCACCCCGCACCTGGACGCCTTGGCCCGCCGCAGCCTCCTCTTTCGCAATGCCTTCACCTCGGTCA 222
Query 203 GCAGCTGCTCTCCCAGCCGCGCCAGCCTCCTCACTGGCCTGCCCCAGCATCAGAATGGGATGTACGGGCTGCAC 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GCAGCTGCTCTCCCAGCCGCGCCAGCCTCCTCACTGGCCTGCCCCAGCATCAGAATGGGATGTACGGGCTGCAC 296
Query 277 CAGGACGTGCACCACTTCAACTCCTTCGACAAGGTGCGGAGCCTGCCGCTGCTGCTCAGCCAAGCTGGTGTGCG 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAGGACGTGCACCACTTCAACTCCTTCGACAAGGTGCGGAGCCTGCCGCTGCTGCTCAGCCAAGCTGGTGTGCG 370
Query 351 CACAGGCATCATCGGGAAGAAGCACGTGGGGCCGGAGACCGTGTACCCGTTTGACTTTGCGTACACGGAGGAGA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CACAGGCATCATCGGGAAGAAGCACGTGGGGCCGGAGACCGTGTACCCGTTTGACTTTGCGTACACGGAGGAGA 444
Query 425 ATGGCTCCGTCCTCCAGGTGGGGCGGAACATCACTAGAATTAAGCTGCTCGTCCGGAAATTCCTGCAGACTCAG 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ATGGCTCCGTCCTCCAGGTGGGGCGGAACATCACTAGAATTAAGCTGCTCGTCCGGAAATTCCTGCAGACTCAG 518
Query 499 GATGACCGGCCTTTCTTCCTCTACGTCGCCTTCCACGACCCCCACCGCTGTGGGCACTCCCAGCCCCAGTACGG 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GATGACCGGCCTTTCTTCCTCTACGTCGCCTTCCACGACCCCCACCGCTGTGGGCACTCCCAGCCCCAGTACGG 592
Query 573 AACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGCGGCATGGGTCGTATCCCAGACTGGACCCCCCAGGCCTACG 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGCGGCATGGGTCGTATCCCAGACTGGACCCCCCAGGCCTACG 666
Query 647 ACCCACTGGACGTGCTGGTGCCTTACTTCGTCCCCAACACCCCGGCAGCCCGAGCCGACCTGGCCGCTCAGTAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACCCACTGGACGTGCTGGTGCCTTACTTCGTCCCCAACACCCCGGCAGCCCGAGCCGACCTGGCCGCTCAGTAC 740
Query 721 ACCACCGTAGGCCGCATGGACCAAGGAGTTGGACTGGTGCTCCAGGAGCTGCGTGACGCCGGTGTCCTGAACGA 794
||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACCACCGTCGGCCGCATGGACCAAGGAGTTGGACTGGTGCTCCAGGAGCTGCGTGACGCCGGTGTCCTGAACGA 814
Query 795 CACACTGGTGATCTTCACGTCCGACAACGGGATCCCCTTCCCCAGCGGCAGGACCAACCTGTACTGGCCGGGCA 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CACACTGGTGATCTTCACGTCCGACAACGGGATCCCCTTCCCCAGCGGCAGGACCAACCTGTACTGGCCGGGCA 888
Query 869 CTGCTGAACCCTTACTGGTGTCATCCCCGGAGCACCCAAAACGCTGGGGCCAAGTCAGCGAGGCCTACGTGAGC 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTGCTGAACCCTTACTGGTGTCATCCCCGGAGCACCCAAAACGCTGGGGCCAAGTCAGCGAGGCCTACGTGAGC 962
Query 943 CTCCTA--GAC----CTCAC----GCCCAC---------------CATCTTG-------GATT----------- 973
|||||| ||| || || |||||| ||||.|| ||||
Sbjct 963 CTCCTAGTGACTAGGCT-ACTTTTGCCCACTGTAAAAGGCACCGTCATCCTGGTATCAAGATTCTGGAGAGGCC 1035
Query 974 --------------------------------------------GGTTCTCGATCCCGTAC------------- 990
.|.|.||.||||.||.|
Sbjct 1036 AGATTTGAAATCAAGTTTGTTTGAGACGTGGATGACGATGGGGAAGATGTCCATCCTGTGCAGGGTGCAGACAC 1109
Query 991 --CCCAGCT--ACG-CCA---------------TCTTT-------GGCTCGAAGA------------------- 1018
.|||||| ||| ||| ||||| ||...|||||
Sbjct 1110 TGTCCAGCTGGACGTCCAGGAGGGCATGGGTGTTCTTTGTGGGAGGGAGAGAAGAAGTGAGTCAAGATCACAGG 1183
Query 1019 ----------------------------------------------CCATCC--------ACCTCAC------- 1031
|||.|| |||||||
Sbjct 1184 CCTCAGAGGAAGCAAAGGGAGCCAACGCCCAGGACAGCTCCCCTGCCCACCCCGCCCTTGACCTCACCTTTTCC 1257
Query 1032 ------------------TGGCCGG----------------------------TCCCTCCTG---------CCG 1050
||||.|| ||||||||| ||.
Sbjct 1258 ATGAGGGACTCCACAGCATGGCGGGTCACCCAGCAGCGGCCCCCGGACACCTCTCCCTCCTGGATGATGTCCCC 1331
Query 1051 GCGCTGG----AGGCC-------------GAGCCC-----CTCT-----------------GGGCCACC----- 1080
.|.|||| ||||| | ||.| |||| ||||||.|
Sbjct 1332 TCTCTGGCTCCAGGCCTCATACTCCTCCTG-GCTCAAGTACTCTACAGGTGACATTGGACGGGGCCATCATAGA 1404
Query 1081 --------------GTCTTTGGCAG--CCA----------------------GA-----GCCACCACGAGG--- 1108
||||..||.|| ||| || ||||.|||..||
Sbjct 1405 CCAGCTGTGTGGGGGTCTGGGGGAGTCCCATGGTAAACACCCCTGTCCCCGTGAACCCTGCCAGCACTGGGAGA 1478
Query 1109 --------TCACCATGTCC----TAC--------CCCATG-------CGCTCCGTGCAGCACCGGCACTTCCGC 1155
|.|..|||||| ||| ||| || |||||.|||| ||.||||.||
Sbjct 1479 AGCTCTTCTTAGGATGTCCACTTTACAAACCTGACCC-TGCACACCCCGCTCTGTGC----CCTGCACCTC--- 1544
Query 1156 CTCGTGCACAACCTCAACTTCAAGATGCCCTTTCCCATC--GAC-CAG----GACTTCTACGTCTCACCCACCT 1222
||.|||.|||| ||| ||| ||| |.||.||.| ||| |||
Sbjct 1545 --------CATCCTGAACT-----------------ATCTGGACACAGCAGTGCCTCCTGC----CAC---CCT 1586
Query 1223 TCCAGGACCTCCTGAACCGCACTACAGCTGGTCAGCCCAC------GGGCTGGTACAAGGACCTCCGT----CA 1286
.||||.||| ||.||.|.||.| |||||||| || |||.||.|..|||||.| |.
Sbjct 1587 GCCAGCACC----GAGCCCCTCTTC-------CAGCCCACCCCAGTGG---GGTCCAGGCCCCTCCCTGGAGCC 1646
Query 1287 TTACTACTACCGGG-CGCG--------------------CTGG--GAGCTCTACGA------CCGGAGCC---- 1327
|.|| ||..|||| |.|| |||| |||..|||.|| .|.|||||
Sbjct 1647 TCAC--CTTGCGGGTCACGGTGCACTGCTGAGTCATGTCCTGGATGAGGGCTATGAGCTGCTGCTGAGCCCTGC 1718
Query 1328 -GGGACCCCCACGAGACCCAGAACCTG--GCCACCGACC-------CGCGCT------TTGC-----------T 1374
|.||||..|| |||.|||.||.||.| |||.||..|| .||||| |.|| |
Sbjct 1719 AGAGACCAGCA-GAGGCCCTGACCCAGCTGCCTCCTGCCAGGCTGGAGCGCTCCATCCTGGCGGCCATGCCAGT 1791
Query 1375 C-----AGCTT-----------------------------CTGGAGATGCT-----------------TCGGGA 1397
| ||||| ||||||||||| .|||||
Sbjct 1792 CTCCAGAGCTTTCAAAAGACTCCAGGGCCTCGGCCCACCCCTGGAGATGCTGATTTACTTGTCCTGGGGCGGGA 1865
Query 1398 CC-------AGCTG-------GCCA------AGTGGCAGTGGGAGACCCAC-----GACCCC-----------T 1435
|| .|||| |||| || ||| ||||| ||||.| |
Sbjct 1866 CCCAGGGGGTGCTGTTGAGCAGCCAGCGTACAG-GGC---------CCCACTCCAGGACCTCAATATTCATGGT 1929
Query 1436 GGGTGTGCGCCCCCGACGGCGTCCTGGAG-----GAGA-AGCTCT-----CTCCCCAGTGCCA-GCCCCTCC-- 1495
|||| |||..|.|.||..||||||| |||| ||||.| .|.|..||||||| |||.||||
Sbjct 1930 GGGT-----CCCTGGCCTGCAGCCTGGAGTCACCGAGAGAGCTGTTAGAAATGCAGAGTGCCAGGCCTCTCCCT 1998
Query 1496 -------------------------------------ACAATGAGCTG-------------------------- 1506
.||||||| ||
Sbjct 1999 GGACCTGCTGGCTCCGATCCCCAGGGGACTTGAGTTTGCAATGAG-TGATGGGGGTGCTGAGCTCAACACTCCT 2071
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2072 GCTTTCTAGCACTGTGCGTTCCGTGCACTTGAAACTTGGAGCCTCCCATAGGCTGATCTAGAACAATGGTTTCC 2145
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2146 TTTTCTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAATGGCTCAATCCCGGC 2219
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2220 TCACTGCAACCTCTGCCTCCGGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCA 2293
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2294 CCTGCCACCACGCCCAGCTAAGTTTTTTGTATTTTTAATAGAGACAGGGTTTCACCAGGTTACCCAGGCTGGTC 2367
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2368 TCGAACTCCTGACCTCAGATGATCCACCCGCCTCGGCCTCCCAAAGTGTTTGGATTACAGGTGTGAGCCACCAT 2441
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2442 GCTCGGCCTAGAGCAGTGGTTTTCAATGGAGCAAGGCAGGGGGCAATGTCACTCCCCAGGGAGGGTGACCAGCT 2515
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2516 GTCCCTGCTTGCCCAGGACCGAGGGGCTTCCCTGCAAGTGGGGCTTTCAGTGCTAAGACCAAGACAGTCCTAGG 2589
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2590 AGAACCAGGGGACCCTTGGCAACCTATAGAGACATTTCTGGTTGTCACAGCTGGGGCATGGGAGTAGTCCCGGC 2663
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2664 ATCCTGGGTAGGGCGGCCAGGGATGCTGCTCTATATCCTGCAGTGCCCAGGACGGCCCCACCACAGACGGGGAT 2737
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2738 CCAGCCCCAAACGTCCATGGTACCAAAGCTAAGAAACCCAGAGCTAAGAAACCCAGATCTAGAATGTTCTAGAA 2811
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2812 TGAACATTTCATTTGCAATATATAAAGCATCCATCACAAAGAAACAACATCTTCAGCAGTGATCTTGGCAGGCT 2885
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2886 TCCCTCCTTAGGGGGGTCTCACCACGCCCACCCTCTATTGCTGGGCAGGAGGAGGAAGCCGAGGCAGGCTGGGT 2959
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2960 GCCATTTCCCTGTGGGCCTCTCTGGGGACGCACCGAGCTCGAGGCAGCTGCTCACCTGGAGTAGTTGGGGATGG 3033
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3034 TGCCGTGCGCGGCAGTATCCTTCATGGTGTAAGAGTTCACGCGGTGGGCATGCCAGCAGCCGCAGCCCTGGAAC 3107
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3108 ATGGTGTCGGTGACGTGCAGGACCTCGTTGCAATGCACCTGCAGCTCCCCTTTGGCCCTGCCCTCCATGGCCAG 3181
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3182 GTTGACCCGGATGTAGAATGAGTCCCCCGAGGTCGCCACTTTGGCCTCCAGGTCCTGGAGTAGCCTCTTATAAC 3255
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3256 CTGATAAAAGGGGACATGAGCCACAGATGAGCCACAGATACGAGCCTCTGCGAGGAAGGTTGCAGAAAATTAAA 3329
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3330 GTAGGAGAGAAGGAAGGACCCTCCCAGTCTCAGAAGCTGCTCTGGCACTGGAGTCAGTGGGTGGGAGGTTTCCA 3403
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3404 GCTGGCTTGGGGGCCTCCTGGGGACCTGGGGCACAGCCTGGCTGATCCTCTCTTGGCTCTGGGGGTCCCTGGCT 3477
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3478 GCTGGGCGTGCAGAAGAACCACCAGGGACTTAAGGGTCATGGAGTCTGGCCAGGCAGCTGTGCACACGAGAGGA 3551
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3552 GTGGTATGTGTACCGTCCGTGTTGACCTTCACAGACAGGCAGCAGAAGCCGTCCACCCTCCTGAGAAGCCCCAC 3625
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3626 GGCCTCCTCCAGGGTCGTGTCCTCCAGGACTGCCTTGAACAAGGGCTCTGAGGCTTCGTAATCAACCTGAGGGC 3699
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3700 AAGTCGAGAAGGTCAGTCTCTTTCCCCCGGGACTCTGAATCCAGCCAGAAGACAGAAGGCGCTGAGGGCACTGA 3773
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3774 GGCGAGGCGCGGGCCAGCCCTGCCGTAGGACCACTGCCTGCACGCCTTGGTCAAAACAAAGCCACACACCAGAG 3847
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3848 CCTCTGTGGGGCCTTCACACCTCTAGTGATGCGTGCTACACATAGTGCTGGCCAGAGAGTCAACTGCCAACCCT 3921
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3922 TCCCCAGTCGAGATCGGGGGTTCTTTGTGATAAGCACTTTCCTGTCTTGAAAAAGAAAAGAAAAGAAAAGAAAG 3995
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3996 AACCTCGGTTCTAGAACATTCAAGAGCATTCTAGATAGAGGTTTCTTAGCCTTGGGATCATTCTGTGCTGCTGC 4069
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4070 GGGCTATACCGGGCCCTACAGGATGCTGAGTGGCATCCCTGGCCTTCACCTACCCGATGCCCTGGCTCTCCACC 4143
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4144 CACAGCCTTCCCCACTGTGAAGGCCCACCCCCCAGGGCTTCCACCATCCACTTCATTTCTTCTCAATATTGTTC 4217
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4218 TAAGCTTAGGAGAGTAGATATTTTTACAATAAAAATTAAGATGTGTTTTAACACCATTAGAATCTAATTGGCCC 4291
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4292 CCTTAGGATATCGGGACTATCTCCCTGAACATCGTCAAGGGGCTCTGTTGCTTGAACTACCTCAGAGCTGATAA 4365
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4366 TTGGGAACCTTAAGAGCAGGGTTCCCCAACCCCTGGGCCACATACTGGTACTGGTCCATGGTCCATCAGGACCC 4439
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4440 GGGTCACACAGCAGGAGGGGCGTGGTGGGCAAGTGAGCATTACGGCCTCAGCTCCACCTCCTGTCAGCTCAGCA 4513
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4514 CAGCAGTAGATTCTCAGAGGAGCATGAGCCCTATCGTGAACTGTGCAAGTGAGGGATCTAGGTTTCACGCTCCT 4587
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4588 TATGAGAATCTAATTCCTGATGATCTGTTACCGTCTCCCATCACCCCCAGATGGGACCGTCTAGTTGCAGGAAA 4661
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4662 ACAAGCTCAGGGCTCCCACTGATTCTGAATTATGGTTCAGTGTATGATTCTTTCATTACATATTACAGTGTAAT 4735
Query 1507 -------------------------------- 1506
Sbjct 4736 AATAATAGAAATAAAGTGTACAATCAATGTAA 4767
