Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07162
- Subject:
- XM_005259223.3
- Aligned Length:
- 2190
- Identities:
- 1325
- Gaps:
- 660
Alignment
Query 1 ATGATTTCACCTTCACTTGAACTGCTTCATTCAGGACTCTGCAAATTCCCTGAAGTAGAAGGAAAAATGACCAC 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 ATTCAAAGAGGCAGTGACATTCAAGGATGTGGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CCCAGAGGAAGCTGTACCGAGATGTGATGCTAGAGAACTTCAGGAACCTGCTCTCAGTAGGGAATCAACCATTC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 CACCAAGATACTTTCCACTTCTTAGGGAAGGAAAAGTTTTGGAAGATGAAGACAACAAGCCAAAGAGAAGGGAA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 TTCAGGAGGCAAGATCCAAATTGAGATGGAGACTGTTCCAGAAGCAGGACCACATGAAGAGTGGTCCTGTCAGC 370
||.|||||||||||||||.|||||.|||||.|||||||||..|.||.|.||||.|
Sbjct 1 -------------------ATGGAGATGGAGACTGTTTCAGAATCAGGAACACATGAAGGCTTGTTCAGTCATC 55
Query 371 AAATATGGGAACAAATTGCAAGTGACCTAACCAGGTCTCAAAACTCCATAAGG--AACAGCTCTCAGTTCTTCA 442
|||..||||||||||||.||||||||.|||||||||.||||.||||||| || |||||||.||||||||.||
Sbjct 56 AAACCTGGGAACAAATTTCAAGTGACTTAACCAGGTTTCAAGACTCCAT--GGTAAACAGCTTTCAGTTCTCCA 127
Query 443 AAGAAGGTGATGTCCCCTGCCAGATTGAGGCAAGACTATCTATAAGTCACGTGCAACAGAAACCTTACCGTTGT 516
||.|||.||||.|.|||||||||.||||.|||.||||||||||||.||||||...||||||||||| |.|..|.
Sbjct 128 AACAAGATGATATGCCCTGCCAGGTTGATGCAGGACTATCTATAATTCACGTAAGACAGAAACCTT-CTGAGGG 200
Query 517 AATGA-ATGTAAACAGTCCATCAGTGATGTTTCTGTCTTTGATCTTCATCAACAATCACACTCAGGAGAGAAAT 589
.|.|| .||||||.|||||.|.||||||||.||.|||.|||||||||||||||||..|||.|||.|||||||.|
Sbjct 201 TAGGACGTGTAAAAAGTCCTTTAGTGATGTCTCCGTCCTTGATCTTCATCAACAACTACAGTCAAGAGAGAAGT 274
Query 590 CTCATACATGTGGTGAGTGTGGAAAAAGCTTCTGTTACAGCCCAGCCCTTCATATTCATCAGAGAGTCCATATG 663
||||||||||||.|||.||||||||.||.||||||||.|||.||||.||||.|||||||||||||||.||.|||
Sbjct 275 CTCATACATGTGATGAATGTGGAAAGAGTTTCTGTTATAGCTCAGCTCTTCGTATTCATCAGAGAGTTCACATG 348
Query 664 GGAGAAAAATGCTATAAGTGTGATGTGTGTGGTAAGGAATTTAATCAGAGCTCACATCTGCAAACTCATCAGAG 737
||.||.|||..||||||.|||||||||||||||||||||||.||||||||||||||||||||||.|||||||||
Sbjct 349 GGGGAGAAACTCTATAATTGTGATGTGTGTGGTAAGGAATTCAATCAGAGCTCACATCTGCAAATTCATCAGAG 422
Query 738 AGTCCATACTGGAGAGAAACCATTCAAACGTGGGCAATGTGGGAAAGGCTTCCATAGTAGATCAGCACTTAATG 811
|.||||.|||||||||||||||||||||.|||.|||.||||||||||||||...|.|||||||||.||||.|||
Sbjct 423 AATCCACACTGGAGAGAAACCATTCAAATGTGAGCAGTGTGGGAAAGGCTTTAGTCGTAGATCAGGACTTTATG 496
Query 812 TTCATTGCAAATTGCACACAGGAGAGAAACCTTATAATTGTGAGGAATGTGGGAAAGCCTTCATTCATGATTCA 885
|||||.|.|||||.||||||||||.|||||||.|||.|||||||.||||||||||.|||||||||||||||||.
Sbjct 497 TTCATCGTAAATTACACACAGGAGTGAAACCTCATATTTGTGAGAAATGTGGGAAGGCCTTCATTCATGATTCC 570
Query 886 CAGCTTCAGGAACATCAGAGAATCCATACTGGGGAGAAGCCATTCAAATGTGATATATGTGGTAAGAGCTTCCG 959
|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 571 CAGCTTCAGGAACATCAAAGAATCCATACTGGGGAGAAGCCATTCAAATGTGATATATGTTGTAAGAGCTTCCG 644
Query 960 TGTTAGATCAAGACTTAATAGGCATTCCATGGTTCACACAGGAGAAAAACCATTCAGATGTGATACATGTGGCA 1033
|..||||.|||..|||||||||||||||||||||||||...||||.||||||||||||||||||||||||||.|
Sbjct 645 TAGTAGAGCAAATCTTAATAGGCATTCCATGGTTCACATGCGAGAGAAACCATTCAGATGTGATACATGTGGTA 718
Query 1034 AGAACTTTCGTCAGAGATCAGCACTTAATAGTCATTCCATGGTCCACATAGAAGAGAAGCCATACAAATGTGAG 1107
|||.||||.|||.||.|||||||||||||||||||..|||||||||||.||.||||||.|..||||||||||||
Sbjct 719 AGAGCTTTGGTCTGAAATCAGCACTTAATAGTCATCGCATGGTCCACACAGGAGAGAAACGGTACAAATGTGAG 792
Query 1108 CAATGTGGAAAAGGCTTCATTTGTAGGCGAGATTTTTGTAAGCATCAGATGGTCCACACAGGAGAGAAACCATA 1181
.|||||||||||.|||||||||.|||||.||||.|||.||||||||||||.|.|||||||||.|||||.|||||
Sbjct 793 GAATGTGGAAAACGCTTCATTTATAGGCAAGATCTTTATAAGCATCAGATAGACCACACAGGGGAGAAGCCATA 866
Query 1182 TAATTGTAAAGAATGTGGGAAGACCTTCAGATGGTCCTCATGTCTTTTGAACCATCAGCAAGTCCACAGTGGAC 1255
||||||||||||||||||.||||.||||||||||.|||||.||||||..|..|||..||.|||||||||||||.
Sbjct 867 TAATTGTAAAGAATGTGGAAAGAGCTTCAGATGGGCCTCAGGTCTTTCAAGACATGTGCGAGTCCACAGTGGAG 940
Query 1256 AAAAATCCTTCAAATGTGAAGAATGTGGGAAGGGATTTTATACAAATTCACGACGATCTTCCCATCAGAGATCC 1329
|.|.|.|.|||||||||||||||||||||||||||||||||||||||||||.|||.|.|||.||.||||||.|.
Sbjct 941 AGACAACATTCAAATGTGAAGAATGTGGGAAGGGATTTTATACAAATTCACAACGTTATTCTCACCAGAGAGCG 1014
Query 1330 CACAATGGAGAAAAGCCATATAACTGTGAGGAGTGTGGTAAGGACTATAAAAGGAGGTTGGATCTTGAGTTTCA 1403
||||.|||||||||||||||||..||||||||||||||.||||.|||.||||||||||||||||||||.|||||
Sbjct 1015 CACAGTGGAGAAAAGCCATATAGATGTGAGGAGTGTGGGAAGGGCTACAAAAGGAGGTTGGATCTTGACTTTCA 1088
Query 1404 CCAGAGGGTCCACACGGGTGAGAGACCCTATAATTGTAAGGAATGTGGCAAGAGCTTTGGCTGGGCCTCCTGTC 1477
.|||||||||||||..||.||||.||||||||||||||||||||||||.||||||||||||||||||||.||||
Sbjct 1089 TCAGAGGGTCCACAGAGGAGAGAAACCCTATAATTGTAAGGAATGTGGGAAGAGCTTTGGCTGGGCCTCGTGTC 1162
Query 1478 TTTTGAAACATCAG------------------------------------------------------------ 1491
|||||||.||||||
Sbjct 1163 TTTTGAATCATCAGAGAATCCACAGTGGAGAAAAACCATTTAAATGTGAAGAATGTGGGAAAAGATTTACTCAG 1236
Query 1492 ------------------------AGACTCCACAGTGGGGAAAAACCTTTCAAATGTGAAGAGTGTGGAAAGAG 1541
|||.||||||||||.||||||||.||||||||||||||||||||.||.||
Sbjct 1237 AATTCACAACTTTATACCCATCGTAGAGTCCACAGTGGAGAAAAACCATTCAAATGTGAAGAGTGTGGGAAAAG 1310
Query 1542 ATTTACTCAGAGTACACAACTTCATTCCCATCAGACATGCCATACTGGAGAAAAGCTATACAAATGTGAGCAGT 1615
|||||||||||.|.||||||||.||||.||||..|.|..|||.|||||||.|||||.||||||||||||..|||
Sbjct 1311 ATTTACTCAGAATTCACAACTTTATTCTCATCGCAGAGTCCACACTGGAGTAAAGCCATACAAATGTGAAGAGT 1384
Query 1616 GTGAGAAGGGGTACAACAGTAAATTTAATCTTGACATGCACCAGAGGGTCCACAGGGGAGAGCGACCCTATAAT 1689
|||.||||||.|.|||||||||.|||||||||||||||||||||||||||||||..||||||.||||.||||||
Sbjct 1385 GTGGGAAGGGCTTCAACAGTAAGTTTAATCTTGACATGCACCAGAGGGTCCACACCGGAGAGAGACCTTATAAT 1458
Query 1690 TGTAAGGAATGTGGAAAGAGCTTTGGCTGGGCTTCATGTCTTTTGAAACATCAGAGACTCCACAGTGGAGAAAA 1763
|||||.||||||||.|||||||||.||.||||.|||.||.|||||||.|||.||||||||||..|||..|||||
Sbjct 1459 TGTAAAGAATGTGGGAAGAGCTTTAGCCGGGCCTCAAGTATTTTGAATCATAAGAGACTCCATGGTGATGAAAA 1532
Query 1764 GCCATTGAAATCTG--GAGTGTGGGAAGAGATCTACTCAGAATTCACAGCTTCATTTACATCAGTAAG---TCT 1832
||||||.||||.|| ||||||||||||||||.||||.||||||||||||||||||..|||||| || ||.
Sbjct 1533 GCCATTCAAATGTGAAGAGTGTGGGAAGAGATTTACTGAGAATTCACAGCTTCATTCCCATCAG--AGGGTTCA 1604
Query 1833 ATGTGGGAGAAAAGCCATA------------------------------------------------------- 1851
...|||| |||||||||||
Sbjct 1605 CACTGGG-GAAAAGCCATACAAATGTGAGAAGTGTGGAAAGAGCTTCAGATGGGCCTCAACTCATCTAACCCAT 1677
Query 1852 -------------------------------------------------------------------------- 1851
Sbjct 1678 CAGAGACTCCACAGTAGAGAAAAACTACTTCAATGTGAGGACTGTGGGAAGAGCATTGTGCACAGTTCATGCCT 1751
Query 1852 -------------------------------------------------------------------------- 1851
Sbjct 1752 TAAAGACCAACAAAGAGACCAAAGTGGAGAGAAAACATCTAAATGTGAGGACTGTGGGAAGCGCTACAAGAGGC 1825
Query 1852 -------------------------------------------- 1851
Sbjct 1826 GCTTGAATCTTGATACGCTTTTGTCATTATTTTTAAATGACACA 1869
