Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07340
- Subject:
- NR_046399.2
- Aligned Length:
- 5722
- Identities:
- 1454
- Gaps:
- 4267
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTAGTGCTCCTGCTTCCTGGCCGAGGGCGGGCGAGCGGAGCCTGCTTTCGCAGCGATCGCGAGCGTGTGGCGAT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCTTCTGTCTGTTATTTAGATATGGAAGCTGAGGGGATGCACAGAGGCAGCCAGAACCTAGGTCAGGGTCTCG 148
Query 1 ----------------------------------ATGGGGGAGCCCGGCTTCTTCGTCACAGGAGACCGCGCCG 40
||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CTCGGTGCTGACCGCCCCCGGGGTCGAGTAGGCGATGGGGGAGCCCGGCTTCTTCGTCACAGGAGACCGCGCCG 222
Query 41 GTGGCCGGAGCTGGTGCCTGCGGCGGGTGGGGATGAGCGCCGGGTGGCTGCTGCTGGAAGATGGGTGCGAGGTG 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GTGGCCGGAGCTGGTGCCTGCGGCGGGTGGGGATGAGCGCCGGGTGGCTGCTGCTGGAAGATGGGTGCGAGGTG 296
Query 115 ACTGTAGGACGAGGATTTGGTGTCACATACCAACTGGTATCAAAAATCTGCCCCCTGATGATTTCTCGAAACCA 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACTGTAGGACGAGGATTTGGTGTCACATACCAACTGGTATCAAAAATCTGCCCCCTGATGATTTCTCGAAACCA 370
Query 189 CTGTGTTTTGAAGCAGAATCCTGAGGGCCAATGGACAATTATGGACAACA------------------------ 238
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTGTGTTTTGAAGCAGAATCCTGAGGGCCAATGGACAATTATGGACAACAAGAGTTTTCCTTCTGAAAAGGCAG 444
Query 239 -------------------------------------------------------------------------- 238
Sbjct 445 AAGATTTTACAGCAGCAGGAGAGAGATTCCTTTAAGAAGACGAAAATCATGAAGCTTATTTCTTCTTTCTTTCA 518
Query 239 --------AGAGTCTAAATGGTGTTTGGCTGAACAGAGCGCGTCTGGAACCTTTAAGGGTCTATTCCATTCATC 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTTTCCCCAGAGTCTAAATGGTGTTTGGCTGAACAGAGCGCGTCTGGAACCTTTAAGGGTCTATTCCATTCATC 592
Query 305 AGGGAGACTACATCCAACTTGGAGTGCCTCTGGAAAATAAGGAGAATGCGGAGTATGAATATGAAGTTACTGAA 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGGGAGACTACATCCAACTTGGAGTGCCTCTGGAAAATAAGGAGAATGCGGAGTATGAATATGAAGTTACTGAA 666
Query 379 GAAGACTGGGAGACAATATATCCTTGTCTTTCCCCAAAGAATGACCAAATGATAGAAAAAAATAAGGAATTGAG 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAAGACTGGGAGACAATATATCCTTGTCTTTCCCCAAAGAATGACCAAATGATAGAAAAAAATAAGGAATTGAG 740
Query 453 AACTAAAAGGAAATTCAGTTTGGATGAATTAGCAGGTCCTGGAGCTGAAGGCCCCTCAAATTTGAAATCCAAAA 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AACTAAAAGGAAATTCAGTTTGGATGAATTAGCAGGTCCTGGAGCTGAAGGCCCCTCAAATTTGAAATCCAAAA 814
Query 527 TAAATAAAGTGTCTTGTGAATCTGGTCAGCCAGTGAAATCACAGGGGAAAGGTGAAGTGGCCAGTACACCCTCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TAAATAAAGTGTCTTGTGAATCTGGTCAGCCAGTGAAATCACAGGGGAAAGGTGAAGTGGCCAGTACACCCTCT 888
Query 601 GACAATTTGGATCCTAAGTTGACTGCCCTTGAGCCAAGTAAGACCACAGGGGCTCCCATTTACCCTGGCTTCCC 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GACAATTTGGATCCTAAGTTGACTGCCCTTGAGCCAAGTAAGACCACAGGGGCTCCCATTTACCCTGGCTTCCC 962
Query 675 CAAAGTCACAGAGGTTCATCATGAGCAGAAAGCCTCAAACTCTTCAGCATCTCAGAGAAGCTTACAGATGTTTA 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CAAAGTCACAGAGGTTCATCATGAGCAGAAAGCCTCAAACTCTTCAGCATCTCAGAGAAGCTTACAGATGTTTA 1036
Query 749 AGGTGACCATGTCCAGGATTCTGAGGCTCAAAATACAGATGCAGGAAAAACATGAAGCCGTTATGAATGTGAAA 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGGTGACCATGTCCAGGATTCTGAGGCTCAAAATACAGATGCAGGAAAAACATGAAGCCGTTATGAATGTGAAA 1110
Query 823 AAGCAGACCCAAAAGGGGAACTCAAAGAAAGTTGTGCAAATGGAGCAGGAACTTCAGGACTTACAGTCCCAGCT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AAGCAGACCCAAAAGGGGAACTCAAAGAAAGTTGTGCAAATGGAGCAGGAACTTCAGGACTTACAGTCCCAGCT 1184
Query 897 GTGTGCAGAGCAGGCTCAGCAGCAGGCAAGAGTGGAGCAACTAGAGAAGACTTTCCAGGAAGAGGAACAGCATC 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GTGTGCAGAGCAGGCTCAGCAGCAGGCAAGAGTGGAGCAACTAGAGAAGACTTTCCAGGAAGAGGAACAGCATC 1258
Query 971 TTCAGGGTTTGGAGATAGCCCAAGGAGAAAAGGACCTGAAGCAACAGCTGGCCCAGGCTCTGCAGGAGCATTGG 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTCAGGGTTTGGAGATAGCCCAAGGAGAAAAGGACCTGAAGCAACAGCTGGCCCAGGCTCTGCAGGAGCATTGG 1332
Query 1045 GCTCTAATGGAAGAGCTAAATCGCAGCAAGAAGGACTTTGAAGCAATCATTCAAGCCAAGAACAAAGAATTAGA 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GCTCTAATGGAAGAGCTAAATCGCAGCAAGAAGGACTTTGAAGCAATCATTCAAGCCAAGAACAAAGAATTAGA 1406
Query 1119 GCAGACCAAGGAAGAGAAGGAGAAGATGCAAGCACAGAAGGAAGAAGTTCTTAGCCACATGAATGATGTGCTAG 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GCAGACCAAGGAAGAGAAGGAGAAGATGCAAGCACAGAAGGAAGAAGTTCTTAGCCACATGAATGATGTGCTAG 1480
Query 1193 AGAATGAGCTCCAATGTATTATTTGTTCAGAATACTTCATTGAGGCTGTCACCTTGAACTGTGCCCACAGTTTC 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AGAATGAGCTCCAATGTATTATTTGTTCAGAATACTTCATTGAGGCTGTCACCTTGAACTGTGCCCACAGTTTC 1554
Query 1267 TGCTCCTACTGTATCAATGAATGGATGAAGCGGAAGATAGAATGCCCCATTTGTCGGAAGGACATTAAGTCCAA 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TGCTCCTACTGTATCAATGAATGGATGAAGCGGAAGATAGAATGCCCCATTTGTCGGAAGGACATTAAGTCCAA 1628
Query 1341 AACATACTCTTTGGTTCTGGACAATTGCATTAATAAGATGGTAAATAATCTGAGCTCAGAAGTGAAAGAACGAC 1414
|||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AACGTACTCTTTGGTTCTGGACAATTGCATTAATAAGATGGTAAATAATCTGAGCTCAGAAGTGAAAGAACGAC 1702
Query 1415 GAATTGTTCTCATTAGGGAACGAAAAGCAAAGAGATTGTTC--------------------------------- 1455
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GAATTGTTCTCATTAGGGAACGAAAAGCAAAGAGATTGTTCTGAAGACCGTGCTCTAAGGGCATTTGAAAGACT 1776
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 1777 GCCAGGTAGTGCGAGCCTGAGATGGTCTGGAGGATTCTCTCTAGCCGTGACTCCGCTGCTCTGAAGGTCAACTG 1850
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 1851 AGAAGTCTTGTGGGACAGAGACTTGAGTTAGGAAGCCCTCAGTCACTTGCCTTCCACGGTGGCCAGCCCTGCTG 1924
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 1925 CCATCATTGGCTGAAGCACCACCAGGATTCACGGCACCCAACTGCTTCAGGGTACTTCGTAGACTCTGCCTCAC 1998
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 1999 TACATGTCGAAAGAGTTATTTGAGTTCTCTTCTGTTTTTTTTTAATTTGTTGTTGTTGTTACTGTTTTGATACC 2072
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 2073 TCGGAAACACCTCCGTTGACAGTTGTTTTGGATAGGTTGGGTGTACCCCATGGCTGCCTCTGAAGGCAGTGTCT 2146
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 2147 ATTTTGAGAGGATGGCTTACCTCTTCTTTGTGAAAATACTATCTCATTTCCTGGAAATAAAATGTAAAACCTGT 2220
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 2221 CAGTTGCTCAGCTGGGCTTTGGTGTATTTACCTTCCTTCCCTTCCTGCTCCCAGACAGTCTCACAAGTAAACAC 2294
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 2295 CAGCAGCTCATAGATTACAACCAAGAAAGTGACTGTATCAGATGATAGACTTCAAGTGAATGTCAGCCTAAGAG 2368
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 2369 GCCAAGCTGCAGATCGTGGCAACAGATGAGCTCTGTTAACCTCCTGACTGTCGTGTTTCCTTTTTATTACAGAG 2442
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 2443 GTGGGTCACTGTTTACCTTGTTTCAGGGGTGGGAGAAACTCCTTTCCTTCAGCTGGCATTTGAATGTTTCCAAA 2516
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 2517 TCTATTTTATCTGACGTCATGAACACACAGGCAATGATTTTATGACAACTTGATGTGCTTTTTTCTTTATTTTT 2590
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 2591 CTTTTACATTAGAAGTTTTCTCTCTTTTCTCCACCTCTCCTTTATTTTTAATTTTAATTTTAATTTTTGAAACA 2664
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 2665 AGATCTGACTCTGTTGCCCAAGCTGGAGTACAGTAGTGCAATCTCAGCTCACTGCAACCTCCACCTCCCAGACT 2738
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 2739 CAAGCCATCCTCCCACCTCAACCTCCCAAGTAGCTGGGACTACAGGCATATGCCATCACACCCAGCTAATTTTT 2812
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 2813 GTTTTTCTGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAATTCCTGACCTTAAGTGATCCACCT 2886
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 2887 GCCTAGGCCTCTAAAATGCTGGGATTACAGGCGTGAGCCACCACGCCCAGCCTATACCCCATGTATTTTCATAA 2960
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 2961 AGGGTTGGAAACTATTGATTGCCAACTTTTTAAGGATGGTAGGGATTTTTTCTTTGTTGAATATACTGTGAATT 3034
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 3035 TTGGGATTCTGGAGTCCTTAGTCTTCATTTCCATTCTTCTGCCCATGATTACTGATCAAAATACTGGTAGAGTC 3108
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 3109 ATGGAGGAAGTAAGTTAAATGTGGAAAAAATGCTTTAAAAGTACTTACTATAACCACATCATAAGAATTCTGGA 3182
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 3183 AAAATAGAGAACAAAAGGAAAAGATTGTTACCACCTTGATTTAATAACTTCTTGTTTCCCCATACATGTGTTTT 3256
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 3257 GTTTATAGATTGCATGGGTATATGTCAATTTTTATATGTTCTGTGTTTAGTTTACATATTGTAATTCATTTTTA 3330
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 3331 AGAGAGTACAGACATACACTTTTTGAGTAGGCAATATGTTCACATAGTTTGAAATTAAAGGTACAAAATGGCGT 3404
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 3405 AGAATGAAATGCCTCTCACCCTTTCCCCACAGCGACTACTTCCCACTCAGAGGCAACAAGTATTACAGTTGCTT 3478
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 3479 GTATATTCTTCCAGAGATCTCTGTCTATACAAGCAAAAACACATGTGGTCTTTTTCCTTGCTTTGCACAAATGG 3552
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 3553 TAAACTGTACGCTATTCTGAACCTTGCTTTTTTCAGATATATGTTGGCAACAGTTCCATGTCAGTACATAGTTT 3626
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 3627 CCTTTCTTTATTACAGCTGCCTGTTTTTTCATTGTGTATTTGCACCATCATTTACTTTTCTGGCTTACTTTTGA 3700
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 3701 TAGAAATCTAGGTTGGTTCAAACCTTTTTACTCTTAAAACAATGCTGCAGTTAACACCCTTGTACATATATCTT 3774
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 3775 TAGAGAGAAGATATTTTAAAAAGAAATACCTTTTTAAAAATTATTTTATTATTTTTTAATAGAGACTATGTTGC 3848
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 3849 CTAGGCTGGTCTTGAAATTCTGGGCTAAAGCAATCCTACCACCTTGGCCTCCCAAAGTGCTGAGATTACAGGCA 3922
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 3923 TGAGCCATTGCACCTGGCCAAGAAGAGACATCTTGACTTGAGCCTGAAGACTATGTACAGAGACTGACCTCACA 3996
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 3997 GACTGACCATTCCATCCCACAGCTGCTGGACATAGAGTGATTTGCAGCCCCTCCTTTCAGAGTACCACATCCCT 4070
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 4071 CTCAAGTGTTCCACAACATCTAGGAAAGTGAGCTCTTAAAGACAGACTAAAAAGAGTAATAAATCAATACAACA 4144
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 4145 ACATTAAAAGCCAGACTAGCGGAGTTTGAATCTTGGCCCTGCTGTTAGTAACTGTGTGAGCCTTGGGCAAGTTA 4218
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 4219 CTCAGCCTCCTTGTGTCTTGGTTTTGGTTTCTTCATCTCTAAGTAATTATATCTGTCATTATTGCCCTGATCAC 4292
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 4293 AAACAAAAGCCTGAATGTACTATGTTTAAAAGACAAACCAAAAATTAACCCAAACTTGCATTATTTGTCTGAGC 4366
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 4367 TACAGAATGTTCTTTCCTTGGAGAGATATCTGATATTAAACATCATCTGCATTTTACTTGCCTAGAAAATACAC 4440
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 4441 GGTAACTTTTCTGCCTTGCAGCATCAAACTATAGTACAGCTGAGCCCCAGTGCTGTGCAGTCTGACTCTAATTA 4514
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 4515 AAGGCACCTTCTTTACAGCAGGGCTCTGGGGAACTGGAAAAGGGGGTTTGTTTCATTATCTGGTTTTATTAAGC 4588
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 4589 AGATGAATGCAGCCAGCTATATGAAGCACTTTGCAGTGAATGGCAGGTGTCCCATATCTGGTTATGTTAACCTA 4662
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 4663 GAAAGGGCTCACTCTACCTCTAGGCATGTTTCATCCCAACAATCAGACTGTGCCAAAGCAGGGGACTTTGTCCT 4736
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 4737 TTGTGGATTGCATAGCTGGATACCCATCATCTGTTTCTCTGATTGGAAGCTGCTGTTGTACAGAAAGACCTGCA 4810
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 4811 TTTCCCCCTTGTCTCCAGTTCTCTCACTACTTTTTCCTCCTCTGTGAGTGACCATCCAGGCAGTCACCATAACT 4884
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 4885 GCTGGAGTGTCTGGGATTGGTAGCTCTCTCCAACTGCCTGCTTGCTCTTTACAGCCTCTCTCTGTGACTGGAAT 4958
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 4959 CTCTCCACCTCATCGTATCTAAGGATAACCCAGAAACATGGGGTGTCCTAGGTATGTTTATCTCGACACTGAAC 5032
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 5033 CCCCTAGGCTTCTGATGAATCCAGTGATTAGCTAAATTTGACATAGAAAGTAAGAAGGAATGTCTACTTTGTAT 5106
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 5107 TGTGGTCCTAATCTAAGATCAGGAGAATCCTGGAATTGTTATCTGTCTCTTGCTCTGAGATACAGACTTGTTCA 5180
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 5181 TAGGTGTGGGGCCTGATTGGAACAGGATCTGCCATTGGTCACAATAGGTCAAGGGCTTGTTCTGAACCCTAGTT 5254
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 5255 AGCTTCATTCAGAGAAAGAAACTTCCTACCTGGTCAGCTTTTTCAGCTTCTCCAACAAATGGGAGTTGAGGCAG 5328
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 5329 TAGGAGTGTGGGGTTCTTGGGAAGACGATGGGGCCTTGTATTAAGGAGAAATAATGAACTATCTTCTTGATTCT 5402
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 5403 TCCATTGAGAAAAGCATATGAATCCTAGGAAAGGGCTCAGCCTGTGATAGGCATTCAATAAATACTCCAATGCT 5476
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 5477 GTCATTCCTTTGTCTACAGCATCCCCAAACAATGTACCAGTGATGGGCTACCTGAGCTCATCTAGTCGCCAAGC 5550
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 5551 AGTATCTCCTGCTTGCTGCTGCTTTACTACATTCCAGATGCCCACCTCATCCAATTTCCAGAGCCACTATCTCT 5624
Query 1456 -------------------------------------------------------------------------- 1455
Sbjct 5625 GCTGTCCACTTTCCTTCAGGCTCTGTGAATACTTCAACCTGCTGTGATTTGGGGCCGTTTGTACTCTGCATGTA 5698
Query 1456 ------------------------ 1455
Sbjct 5699 TTCAATAAATTCAATTCAGCAATA 5722
