Construct: ORF ccsbBroadEn_07340

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011661.1_s300c1, BRDN0000396547
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RNF8 (9025)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9025 RNF8 ring finger protein 8 NM_003958.4 99.9% 100% 1344G>A
2 human 9025 RNF8 ring finger protein 8 XM_006715241.3 93.7% 93.8% 1036_1037ins90;1254G>A
3 human 9025 RNF8 ring finger protein 8 NM_183078.3 88.9% 82.5% (many diffs)
4 human 9025 RNF8 ring finger protein 8 XM_017011462.1 88.1% 88.2% 0_1ins171;1173G>A
5 human 9025 RNF8 ring finger protein 8 XM_006715242.3 82.8% 76.5% (many diffs)
6 human 9025 RNF8 ring finger protein 8 XM_017011463.1 77.3% 71.1% (many diffs)
7 human 9025 RNF8 ring finger protein 8 XM_017011464.1 73.8% 65.9% (many diffs)
8 human 9025 RNF8 ring finger protein 8 XR_427853.3 71.4% (many diffs)
9 human 9025 RNF8 ring finger protein 8 XR_001743731.2 67.4% (many diffs)
10 human 9025 RNF8 ring finger protein 8 XR_001743734.2 64.9% (many diffs)
11 human 9025 RNF8 ring finger protein 8 NR_046399.2 25.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1521
ORF length:
1455
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GGAGCCCGGC TTCTTCGTCA CAGGAGACCG CGCCGGTGGC CGGAGCTGGT
121GCCTGCGGCG GGTGGGGATG AGCGCCGGGT GGCTGCTGCT GGAAGATGGG TGCGAGGTGA
181CTGTAGGACG AGGATTTGGT GTCACATACC AACTGGTATC AAAAATCTGC CCCCTGATGA
241TTTCTCGAAA CCACTGTGTT TTGAAGCAGA ATCCTGAGGG CCAATGGACA ATTATGGACA
301ACAAGAGTCT AAATGGTGTT TGGCTGAACA GAGCGCGTCT GGAACCTTTA AGGGTCTATT
361CCATTCATCA GGGAGACTAC ATCCAACTTG GAGTGCCTCT GGAAAATAAG GAGAATGCGG
421AGTATGAATA TGAAGTTACT GAAGAAGACT GGGAGACAAT ATATCCTTGT CTTTCCCCAA
481AGAATGACCA AATGATAGAA AAAAATAAGG AATTGAGAAC TAAAAGGAAA TTCAGTTTGG
541ATGAATTAGC AGGTCCTGGA GCTGAAGGCC CCTCAAATTT GAAATCCAAA ATAAATAAAG
601TGTCTTGTGA ATCTGGTCAG CCAGTGAAAT CACAGGGGAA AGGTGAAGTG GCCAGTACAC
661CCTCTGACAA TTTGGATCCT AAGTTGACTG CCCTTGAGCC AAGTAAGACC ACAGGGGCTC
721CCATTTACCC TGGCTTCCCC AAAGTCACAG AGGTTCATCA TGAGCAGAAA GCCTCAAACT
781CTTCAGCATC TCAGAGAAGC TTACAGATGT TTAAGGTGAC CATGTCCAGG ATTCTGAGGC
841TCAAAATACA GATGCAGGAA AAACATGAAG CCGTTATGAA TGTGAAAAAG CAGACCCAAA
901AGGGGAACTC AAAGAAAGTT GTGCAAATGG AGCAGGAACT TCAGGACTTA CAGTCCCAGC
961TGTGTGCAGA GCAGGCTCAG CAGCAGGCAA GAGTGGAGCA ACTAGAGAAG ACTTTCCAGG
1021AAGAGGAACA GCATCTTCAG GGTTTGGAGA TAGCCCAAGG AGAAAAGGAC CTGAAGCAAC
1081AGCTGGCCCA GGCTCTGCAG GAGCATTGGG CTCTAATGGA AGAGCTAAAT CGCAGCAAGA
1141AGGACTTTGA AGCAATCATT CAAGCCAAGA ACAAAGAATT AGAGCAGACC AAGGAAGAGA
1201AGGAGAAGAT GCAAGCACAG AAGGAAGAAG TTCTTAGCCA CATGAATGAT GTGCTAGAGA
1261ATGAGCTCCA ATGTATTATT TGTTCAGAAT ACTTCATTGA GGCTGTCACC TTGAACTGTG
1321CCCACAGTTT CTGCTCCTAC TGTATCAATG AATGGATGAA GCGGAAGATA GAATGCCCCA
1381TTTGTCGGAA GGACATTAAG TCCAAAACAT ACTCTTTGGT TCTGGACAAT TGCATTAATA
1441AGATGGTAAA TAATCTGAGC TCAGAAGTGA AAGAACGACG AATTGTTCTC ATTAGGGAAC
1501GAAAAGCAAA GAGATTGTTC TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1561attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)