Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07509
- Subject:
- NM_001311108.1
- Aligned Length:
- 2143
- Identities:
- 1247
- Gaps:
- 746
Alignment
Query 1 ATGAAGAGGTGCAGATCGGACGAGCTGCAGCAACAACAGGGCGAGGAGGATGGAGCTGGGCTGGAAGATGCCGC 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 TTCCCACCTGCCGGGCGCGGACCTCCGGCCTGGGGAGACCACGGGTGCTAACTCTGCTGGCGGGCCAACTTCAG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 ACGCCGGCGCTGCCGCGGCGCCCAACCCAGGTCCCCGAAGCAAGCCTCCTGATTTAAAGAAAATCCAGCAGCTG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TCAGAGGGCTCCATGTTTGGCCACGGTCTGAAGCACCTGTTCCACAGCCGCCGTCGGTCTCGGGAAAGGGAGCA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 CCAGACGTCTCAGGATTCCCAGCAGCATCAGCAGCAGCAGGGTATGTCCGACCATGACTCCCCAGATGAGAAGG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 AGCGCTCTCCGGAGATGCATCGCGTCTCCTACGCCATGTCCCTGCACGACCTGCCCGCCCGGCCCACCGCCTTC 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 AACCGCGTGCTGCAGCAGATCCGCTCCCGGCCCTCCATCAAGCGGGGCGCCAGCCTGCACAGCAGCAGTGGGGG 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 CGGCAGCAGCGGGAGCAGCAGCCGGCGCACCAAGAGTAGCTCCCTGGAGCCCCAGCGTGGCAGCCCTCACCTGC 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 TGCGCAAGGCCCCCCAGGACAGCAGCCTGGCCGCCATCCTGCACCAGCACCAGTGCCGTCCCCGCTCTTCCTCC 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 ACCACCGACACTGCTCTGCTGCTGGCCGACGGCAGCAACGTGTACCTCCTGGCTGAGGAGGCCGAAGGCATCGG 740
..||||.| |.|
Sbjct 1 -------------------------------------------------------------ATGAAGTC--CAG 11
Query 741 GGACAA----------GGTCGATAAGGGAGACCTGGTGGCCCTGAGCCTCCCC----GCC--GGCCATGGTGAC 798
|||.|| ||| ||.||||||||.||.|||||||||||||||||| ||| ||||||||||||
Sbjct 12 GGAGAAAGAGACTGCTGGT-GACAAGGGAGATCTTGTGGCCCTGAGCCTCCCCTCTGGCCCTGGCCATGGTGAC 84
Query 799 ACCGACGGCCCCATCAGCCTGGACGTGCCCGATGGGGCACCGGACCCCCAGCGGACCAAGGCCGCCATTGACCA 872
.|.||.||.||||||||||||||.|||||.|||||.|||||||||||||||||.||.|||||.|||||.||.||
Sbjct 85 TCTGATGGACCCATCAGCCTGGATGTGCCAGATGGAGCACCGGACCCCCAGCGAACTAAGGCTGCCATCGAACA 158
Query 873 CCTGCACCAGAAGATCCTGAAGATCACCGAGCAGATCAAGATTGAGCAGGAGGCTCGCGACGACAATGTGGCGG 946
|||||||||.||||||.||||||||||.||||||||||||||.|||||||||||.||.||.||.||.|||||.|
Sbjct 159 CCTGCACCAAAAGATCTTGAAGATCACTGAGCAGATCAAGATCGAGCAGGAGGCGCGGGATGATAACGTGGCAG 232
Query 947 AGTATCTGAAACTGGCCAACAACGCGGACAAGCAGCAGGTGTCACGCATCAAGCAAGTGTTCGAGAAGAAGAAC 1020
||||.|||||.|||||||||||.||||||||||||||||||||.|||||||||||.|||||.||.|||||||||
Sbjct 233 AGTACCTGAAGCTGGCCAACAATGCGGACAAGCAGCAGGTGTCGCGCATCAAGCAGGTGTTTGAAAAGAAGAAC 306
Query 1021 CAGAAGTCAGCCCAGACCATCGCCCAGCTGCACAAGAAGCTGGAGCACTACCGCCGGCGCCTGAAGGAGATTGA 1094
||||||||.||||||||||||||||||||||||||.||.||||||||||||||.||||||||||||||.||.||
Sbjct 307 CAGAAGTCCGCCCAGACCATCGCCCAGCTGCACAAAAAACTGGAGCACTACCGTCGGCGCCTGAAGGAAATCGA 380
Query 1095 GCAGAACGGGCCCTCGCGGCAGCCCAAGGACGTGCTGCGGGACATGCAGCAGGGGCTGAAGGACGTGGGCGCCA 1168
||||||.|||||||||||||||||||||||.|||||.||.||.||||||||.|||||||||||.||||||||||
Sbjct 381 GCAGAATGGGCCCTCGCGGCAGCCCAAGGATGTGCTACGCGATATGCAGCAAGGGCTGAAGGATGTGGGCGCCA 454
Query 1169 ACGTGCGCGCAGGCATCAGCGGCTTTGGGGGTGGCGTGGTGGAGGGCGTCAAGGGCAGCCTCTCTGGCCTCTCA 1242
||.||||.||.|||||.||.|||||.||||||||.|||||||||||.|||||||||||.||.||.||||||||.
Sbjct 455 ACATGCGTGCCGGCATTAGTGGCTTCGGGGGTGGTGTGGTGGAGGGTGTCAAGGGCAGTCTTTCCGGCCTCTCG 528
Query 1243 CAGGCCACCCACACCGCCGTGGTGTCCAAGCCCCGGGAGTTTGCCAGCCTCATCCGCAACAAGTTTGGCAGTGC 1316
||.||.||||||||.||.|||||||||||||||||||||||.|||||||||||.|||||||||||.||||||||
Sbjct 529 CAAGCTACCCACACTGCGGTGGTGTCCAAGCCCCGGGAGTTCGCCAGCCTCATTCGCAACAAGTTCGGCAGTGC 602
Query 1317 TGACAACATCGCCCACCTGAAGGACCCCCTGGAAGATGGGCCCCCTGAGGAGGCAGCCCGGGCACTGAGCGGCA 1390
.|||||||||||||||||||||||||||.||||||||||.||||||||.||||||||||||||.|||||.||||
Sbjct 603 CGACAACATCGCCCACCTGAAGGACCCCATGGAAGATGGACCCCCTGAAGAGGCAGCCCGGGCGCTGAGTGGCA 676
Query 1391 GTGCCACACTCGTCTCCAGCCCCAAGTATGGCAGCGATGATGAGTGCTCCAGCGCCAGCGCCAGCTCAGCCGGG 1464
||||||||||.||.||||||||||||||.|||||.||.|||||.|||||.||.|||||.|||||||||||.|||
Sbjct 677 GTGCCACACTGGTGTCCAGCCCCAAGTACGGCAGTGACGATGAATGCTCGAGTGCCAGTGCCAGCTCAGCTGGG 750
Query 1465 GCAGGCAGCAACTCTGGGGCTGGGCCTGGTGGGGCGCTGGGGAGCCCTAAGTCCAATGCACTGTATGGTGCTCC 1538
||||||||||||||||||||||||||.||.||.||.|||||.|||||.|..|||||..|.||.||||||||.||
Sbjct 751 GCAGGCAGCAACTCTGGGGCTGGGCCAGGAGGTGCACTGGGAAGCCCGAGATCCAACACTCTTTATGGTGCCCC 824
Query 1539 TGGAAACCTGGATGCTCTGCTGGAAGAGCTACGGGAGATCAAGGAGGGACAGTCTCACCTGGAGGACTCCATGG 1612
||||||.|||||..||||||||||.||.||.||||||||.||||||||.|||||.|||||||||||||||||||
Sbjct 825 TGGAAATCTGGACACTCTGCTGGAGGAACTGCGGGAGATAAAGGAGGGCCAGTCACACCTGGAGGACTCCATGG 898
Query 1613 AAGACCTGAAGACTCAGCTGCAGAGGGACTACACCTACATGACCCAGTGCCTGCAGGAGGAGCGCTACAGGTAC 1686
|.|||.|||||||||||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||.
Sbjct 899 AGGACTTGAAGACTCAGCTGCAGAGGGACTACACCTACATGACCCAGTGCCTGCAAGAAGAGCGCTACAGGTAT 972
Query 1687 GAGCGGCTGGAGGAGCAGCTCAACGACCTGACTGAGCTTCATCAGAACGAGATGACGAACCTGAAGCAGGAGCT 1760
|||.||||||||||.|||||.||||||||||||||||||||.|||||.||.|||||.|||||.|||||||||||
Sbjct 973 GAGAGGCTGGAGGAACAGCTGAACGACCTGACTGAGCTTCACCAGAATGAAATGACCAACCTAAAGCAGGAGCT 1046
Query 1761 GGCCAGCATGGAGGAGAAGGTGGCCTACCAGTCCTATGAGAGGGCACGGGACATCCAGGAGGCCGTGGAGTCCT 1834
||||||||||||||||||||||||||||||||||||.||||||||.|||||.||||||||||||||||||||||
Sbjct 1047 GGCCAGCATGGAGGAGAAGGTGGCCTACCAGTCCTACGAGAGGGCCCGGGATATCCAGGAGGCCGTGGAGTCCT 1120
Query 1835 GCCTGACCCGGGTCACCAAGCTGGAGCTGCAGCAGCAACAGCAGCAGGTGGTACAGCTGGAGGGCGTGGAGAAT 1908
||||||||||.||||||||||||||.|||||||||||.||||||||.|||||.|||.|.||.||.||||||||.
Sbjct 1121 GCCTGACCCGAGTCACCAAGCTGGAACTGCAGCAGCAGCAGCAGCAAGTGGTGCAGTTAGAAGGTGTGGAGAAC 1194
Query 1909 GCCAACGCGCGGGCGCTGCTGGGCAAGTTCATCAACGTGATCCTGGCGCTCATGGCCGTGCTGCTGGTGTTCGT 1982
|||||||||||.||.||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.||
Sbjct 1195 GCCAACGCGCGCGCCCTGCTGGGCAAGTTCATCAACGTGATCCTGGCACTCATGGCCGTGCTGCTGGTGTTTGT 1268
Query 1983 GTCCACCATCGCCAACTTCATCACGCCCCTCATGAAGACACGCCTGCGCATCACCAGCACCACCCTCCTGGTCC 2056
|||||||||.||||||||||||||.||||||||||||||.|||||.||.||||||||||||.||||||||.|||
Sbjct 1269 GTCCACCATTGCCAACTTCATCACCCCCCTCATGAAGACGCGCCTCCGGATCACCAGCACCGCCCTCCTGCTCC 1342
Query 2057 TCGTCCTGTTCCTCCTCTGGAAGCACTGGGACTCCCTCACCTACCTCCTGGAGCACGTGTTGCTGCCCAGC 2127
|||||||.|||||.||.|||||||||||||.||||||||||||||||||||||||.|||.|||||||||||
Sbjct 1343 TCGTCCTCTTCCTACTGTGGAAGCACTGGGCCTCCCTCACCTACCTCCTGGAGCATGTGCTGCTGCCCAGC 1413
