Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07509
- Subject:
- NM_001331034.1
- Aligned Length:
- 2151
- Identities:
- 1489
- Gaps:
- 633
Alignment
Query 1 ATGAAGAGGTGCAGATCGGACGAGCTGCAGCAACAACAGGGCGAGGAGGATGGAGCTGGGCTGGAAGATGCCGC 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 TTCCCACCTGCCGGGCGCGGACCTCCGGCCTGGGGAGACCACGGGTGCTAACTCTGCTGGCGGGCCAACTTCAG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 ACGCCGGCGCTGCCGCGGCGCCCAACCCAGGTCCCCGAAGCAAGCCTCCTGATTTAAAGAAAATCCAGCAGCTG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TCAGAGGGCTCCATGTTTGGCCACGGTCTGAAGCACCTGTTCCACAGCCGCCGTCGGTCTCGGGAAAGGGAGCA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 CCAGACGTCTCAGGATTCCCAGCAGCATCAGCAGCAGCAGGGTATGTCCGACCATGACTCCCCAGATGAGAAGG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 AGCGCTCTCCGGAGATGCATCGCGTCTCCTACGCCATGTCCCTGCACGACCTGCCCGCCCGGCCCACCGCCTTC 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 AACCGCGTGCTGCAGCAGATCCGCTCCCGGCCCTCCATCAAGCGGGGCGCCAGCCTGCACAGCAGCAGTGGGGG 518
.|||.||
Sbjct 1 -------------------------------------------------------------------ATGGCGG 7
Query 519 CGGCAGCAG--CGGGAGCAGCAGCCGGCGCACCAAGAGTAGCTCCCTGGAGCCCCAGCGTGGCAGCCCTCACCT 590
|.|||| || .||||.| .|.|||.|||| .|||| ||||||| ..|
Sbjct 8 CTGCAG-AGTCTGGGAAC----TCAGGCACACC------TGCTC-----------------GCAGCCC---AGT 50
Query 591 GCTGCGCAAGGCC-----CCCCAGGACAGCAGCCTGGCCGCCATCCTGCACCAGCAC-CAGTGCCGTCCCCGCT 658
|||||.||.||.| ||||.|| .||||| || ||||
Sbjct 51 GCTGCCCAGGGTCTGTGACCCCGGG-----GGCCTG-------------------ACACAGT------------ 88
Query 659 CTTCCTCCACCACCGACACTGCTCTGCTGCTGGCCGACGGC-----AGCAACGTGTACCTCCTGGCTGAGGAGG 727
||.|.|||| ||||| ||| |||..||.|||||||.|.|| .||
Sbjct 89 ---------CCGCAGACA----------GCTGG-----GGCCTCAGAGCCCCGGGTACCTCATCGC-----CGG 133
Query 728 CCGAAGGCATCGGG-GACA----------AGGTCGATAAGGGAGACCTGGTGGCCCTGAGCCTCCCCGCCGGCC 790
| |.|||.||||| .||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 C--ACGGCTTCGGGAAACAGTGCCCACACAGGTCGATAAGGGAGACCTGGTGGCCCTGAGCCTCCCCGCCGGCC 205
Query 791 ATGGTGACACCGACGGCCCCATCAGCCTGGACGTGCCCGATGGGGCACCGGACCCCCAGCGGACCAAGGCCGCC 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 ATGGTGACACCGACGGCCCCATCAGCCTGGACGTGCCCGATGGGGCACCGGACCCCCAGCGGACCAAGGCCGCC 279
Query 865 ATTGACCACCTGCACCAGAAGATCCTGAAGATCACCGAGCAGATCAAGATTGAGCAGGAGGCTCGCGACGACAA 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 ATTGACCACCTGCACCAGAAGATCCTGAAGATCACCGAGCAGATCAAGATTGAGCAGGAGGCTCGCGACGACAA 353
Query 939 TGTGGCGGAGTATCTGAAACTGGCCAACAACGCGGACAAGCAGCAGGTGTCACGCATCAAGCAAGTGTTCGAGA 1012
||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TGTGGCAGAGTATCTGAAACTGGCCAACAACGCGGACAAGCAGCAGGTGTCACGCATCAAGCAAGTGTTCGAGA 427
Query 1013 AGAAGAACCAGAAGTCAGCCCAGACCATCGCCCAGCTGCACAAGAAGCTGGAGCACTACCGCCGGCGCCTGAAG 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 AGAAGAACCAGAAGTCAGCCCAGACCATCGCCCAGCTGCACAAGAAGCTGGAGCACTACCGCCGGCGCCTGAAG 501
Query 1087 GAGATTGAGCAGAACGGGCCCTCGCGGCAGCCCAAGGACGTGCTGCGGGACATGCAGCAGGGGCTGAAGGACGT 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 GAGATTGAGCAGAACGGGCCCTCGCGGCAGCCCAAGGACGTGCTGCGGGACATGCAGCAGGGGCTGAAGGACGT 575
Query 1161 GGGCGCCAACGTGCGCGCAGGCATCAGCGGCTTTGGGGGTGGCGTGGTGGAGGGCGTCAAGGGCAGCCTCTCTG 1234
|||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 576 GGGCGCCAACGTGCGCGCAGGCATCAGCGGCTTTGGGGGCGGCGTGGTGGAGGGCGTCAAGGGCAGCCTCTCTG 649
Query 1235 GCCTCTCACAGGCCACCCACACCGCCGTGGTGTCCAAGCCCCGGGAGTTTGCCAGCCTCATCCGCAACAAGTTT 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GCCTCTCACAGGCCACCCACACCGCCGTGGTGTCCAAGCCCCGGGAGTTTGCCAGCCTCATCCGCAACAAGTTT 723
Query 1309 GGCAGTGCTGACAACATCGCCCACCTGAAGGACCCCCTGGAAGATGGGCCCCCTGAGGAGGCAGCCCGGGCACT 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GGCAGTGCTGACAACATCGCCCACCTGAAGGACCCCCTGGAAGATGGGCCCCCTGAGGAGGCAGCCCGGGCACT 797
Query 1383 GAGCGGCAGTGCCACACTCGTCTCCAGCCCCAAGTATGGCAGCGATGATGAGTGCTCCAGCGCCAGCGCCAGCT 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 GAGCGGCAGTGCCACACTCGTCTCCAGCCCCAAGTATGGCAGCGATGATGAGTGCTCCAGCGCCAGCGCCAGCT 871
Query 1457 CAGCCGGGGCAGGCAGCAACTCTGGGGCTGGGCCTGGTGGGGCGCTGGGGAGCCCTAAGTCCAATGCACTGTAT 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 CAGCCGGGGCAGGCAGCAACTCTGGGGCTGGGCCTGGTGGGGCGCTGGGGAGCCCTAAGTCCAATGCACTGTAT 945
Query 1531 GGTGCTCCTGGAAACCTGGATGCTCTGCTGGAAGAGCTACGGGAGATCAAGGAGGGACAGTCTCACCTGGAGGA 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 GGTGCTCCTGGAAACCTGGATGCTCTGCTGGAAGAGCTACGGGAGATCAAGGAGGGACAGTCTCACCTGGAGGA 1019
Query 1605 CTCCATGGAAGACCTGAAGACTCAGCTGCAGAGGGACTACACCTACATGACCCAGTGCCTGCAGGAGGAGCGCT 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CTCCATGGAAGACCTGAAGACTCAGCTGCAGAGGGACTACACCTACATGACCCAGTGCCTGCAGGAGGAGCGCT 1093
Query 1679 ACAGGTACGAGCGGCTGGAGGAGCAGCTCAACGACCTGACTGAGCTTCATCAGAACGAGATGACGAACCTGAAG 1752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 ACAGGTACGAGCGGCTGGAGGAGCAGCTCAACGACCTGACTGAGCTTCATCAGAACGAGATGACGAACCTGAAG 1167
Query 1753 CAGGAGCTGGCCAGCATGGAGGAGAAGGTGGCCTACCAGTCCTATGAGAGGGCACGGGACATCCAGGAGGCCGT 1826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 CAGGAGCTGGCCAGCATGGAGGAGAAGGTGGCCTACCAGTCCTATGAGAGGGCACGGGACATCCAGGAGGCCGT 1241
Query 1827 GGAGTCCTGCCTGACCCGGGTCACCAAGCTGGAGCTGCAGCAGCAACAGCAGCAGGTGGTACAGCTGGAGGGCG 1900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 GGAGTCCTGCCTGACCCGGGTCACCAAGCTGGAGCTGCAGCAGCAACAGCAGCAGGTGGTACAGCTGGAGGGCG 1315
Query 1901 TGGAGAATGCCAACGCGCGGGCGCTGCTGGGCAAGTTCATCAACGTGATCCTGGCGCTCATGGCCGTGCTGCTG 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TGGAGAATGCCAACGCGCGGGCGCTGCTGGGCAAGTTCATCAACGTGATCCTGGCGCTCATGGCCGTGCTGCTG 1389
Query 1975 GTGTTCGTGTCCACCATCGCCAACTTCATCACGCCCCTCATGAAGACACGCCTGCGCATCACCAGCACCACCCT 2048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 GTGTTCGTGTCCACCATCGCCAACTTCATCACGCCCCTCATGAAGACACGCCTGCGCATCACCAGCACCACCCT 1463
Query 2049 CCTGGTCCTCGTCCTGTTCCTCCTCTGGAAGCACTGGGACTCCCTCACCTACCTCCTGGAGCACGTGTTGCTGC 2122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 CCTGGTCCTCGTCCTGTTCCTCCTCTGGAAGCACTGGGACTCCCTCACCTACCTCCTGGAGCACGTGTTGCTGC 1537
Query 2123 CCAGC 2127
|||||
Sbjct 1538 CCAGC 1542
