Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07592
- Subject:
- XR_001783786.1
- Aligned Length:
- 2283
- Identities:
- 1170
- Gaps:
- 1035
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTGTCGTGAACGTGCTGCCGCCTATCAGTCACTCAGTCGCCTGGAGTCGGAGTTGCTATTTCTAGGCTTGTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTGTTGGGTTCGGGCCCCCAGGTAAATAGCCACAGAAGGCTACCAAACAAGATAAATAATTGTCTCCAAGTAGA 148
Query 1 ---------------ATGAGTGGGCATCGATCAACAAGGAAAAGATGTGGAGATTCTCACCCGGAGTCCCCAGT 59
||||||||||||||.||||||||||||.|||||||||||||||||||.||||||||.||
Sbjct 149 AGAAAACCAAGCTCCATGAGTGGGCATCGGTCAACAAGGAAACGATGTGGAGATTCTCACCCAGAGTCCCCTGT 222
Query 60 GGGCTTCGGGCATATGAGTACTACAGGATGTGTATTAAATAAATTGTTTCAGTTACCAACACCACCATTGTCAA 133
||||||.||||||||||||||||||||.|||||||||||||||||||||||||||||.|||||||||.||||||
Sbjct 223 GGGCTTTGGGCATATGAGTACTACAGGGTGTGTATTAAATAAATTGTTTCAGTTACCGACACCACCACTGTCAA 296
Query 134 GACACCAACTAAAGCGGCTAGAAGAACACAGATATCAAAGTGCTGGACGGTCCCTGCTTGAGCCCTTAATGCAA 207
|||||||..||||.|||||||||||||||||.|||||.|||||||||||||||||.||.|||||||||||||||
Sbjct 297 GACACCAGTTAAAACGGCTAGAAGAACACAGGTATCAGAGTGCTGGACGGTCCCTTCTCGAGCCCTTAATGCAA 370
Query 208 GGGTATTGGGAATGGCTCGTTAGAAGAGTTCCCTCCTGGATTGCCCCAAATCTCATCACCATCATTGGACTGTC 281
||.||.|||||||||||.|||.|||||||.|||||.|||||||||||||||||||||||||||||||||||.||
Sbjct 371 GGATACTGGGAATGGCTAGTTGGAAGAGTACCCTCATGGATTGCCCCAAATCTCATCACCATCATTGGACTATC 444
Query 282 AATAAACATCTGTACAACTATTTTATTAGTCTTCTACTGCCCTACAGCTACAGAGCAGGCACCTCTGTGGGCAT 355
||||||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 445 AATAAATATCTGTACAACTATTTTGTTAGTCTTCTACTGCCCTACAGCTACAGAGCAGGCACCTCTGTGGGCTT 518
Query 356 ATATTGCTTGTGCCTGTGGCCTTTTCATTTACCAGTCTTTGGATGCTATTGATGGGAAACAGGCAAGAAGAACC 429
|||||||.|||||.||||||||||||||||||||||||.|||||||.||.||||||||||||||.||||||||.
Sbjct 519 ATATTGCCTGTGCTTGTGGCCTTTTCATTTACCAGTCTCTGGATGCCATAGATGGGAAACAGGCCAGAAGAACT 592
Query 430 AATAGTAGTTCTCCTCTGGGAGAACTTTTTGATCATGGCTGTGATTCACTATCAACAGTTTTTGTGGTTCTCGG 503
||.|||||.|||||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||.||
Sbjct 593 AACAGTAGCTCTCCTCTGGGAGAACTTTTTGATCATGGCTGTGACTCACTATCGACAGTTTTTGTGGTTCTTGG 666
Query 504 AACTTGTATTGCAGTGCAGCTGGGGACAAACCCTGATTGGATGTTTTTTTGTTGTTTTGCGGGGACATTTATGT 577
|||||||||||||||.||.||.||||||||.|||||.|||||||||||||||||||||||.||||||||.||||
Sbjct 667 AACTTGTATTGCAGTACAACTTGGGACAAATCCTGACTGGATGTTTTTTTGTTGTTTTGCTGGGACATTCATGT 740
Query 578 TCTATTGTGCGCACTGGCAAACGTATGTTTCTGGAACATTGCGATTTGGAAT---------------------- 629
||||||||||.|||||||||||.|||||||||||||||||||||||||||||
Sbjct 741 TCTATTGTGCACACTGGCAAACATATGTTTCTGGAACATTGCGATTTGGAATATTCGATGTTACAGAGTCCCAG 814
Query 630 -------------------------------------------------------------------------- 629
Sbjct 815 ATCCTAATTATATTATTCCAGCTTCTCTCAGGAACCGTGGGGCCTTGGTTCTGGAACTTCACGGCAACTTCATA 888
Query 630 -------------------------------------------------------------------------- 629
Sbjct 889 TATCCAGCAAAATGTAAGATGTCTACCCTCCACCCAGGACAGAACCGATCATCTCTGACACACCTACCTGCTTA 962
Query 630 ------------------------------------------------------AATTGATGTGACTGAAGTGC 649
||||||||||||||||||||
Sbjct 963 GTCCTCTGAGTCTGCTACTGAGTGTAATTCCCCTATTGGCGTCACCACTCACAGAATTGATGTGACTGAAGTGC 1036
Query 650 AAATCTTCATAATAATCATGCATTTGCTGGCAGTGATTGGAGGACCACCTTTTTGGCAATCTATGATTCCAGTG 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1037 AAATCTTCATAATAATCATGCATTTGCTGGCAGTGATTGGAGGACCACCTTTTTGGCAATCTATGATTCCTGTG 1110
Query 724 CTGAATATTCAAATGAAAATTTTTCCTGCACTTTGTACTGTAGCAGGGACCATATTTTCCTGTACAAATTACTT 797
.|||||||||||||||||.||.|||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct 1111 TTGAATATTCAAATGAAACTTCTTCCTGCACTTTGTACTGTGGCAGGGACCATATTTTCCTGTACAAATTACTT 1184
Query 798 CCGTGTAATCTTCACAGGTGGTGTTGGCAAAAATGGATCAACAATAGCAGGAACAAGTGTCCTTTCTCCTTTTC 871
||||||||||||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||||
Sbjct 1185 CCGTGTAATCTTCACAGGTGGTGTTGGCAAAAATGGGTCAACCATAGCAGGAACAAGTGTCCTTTCTCCTTTTC 1258
Query 872 TCCATATTGGATCAGTGATTACATTAGCTGCAATGATCTACAAGAAATCTGCAGTTCAGCTTTTTGAAAAGCAT 945
|.|||||||||||||||||.||.|||||||..|||||||||||||||||.||||||||||||||||||||||||
Sbjct 1259 TGCATATTGGATCAGTGATCACGTTAGCTGTTATGATCTACAAGAAATCAGCAGTTCAGCTTTTTGAAAAGCAT 1332
Query 946 CCCTGTCTTTATATACTGACATTTGGTTTTGTGTCTGCTAAAATCACTAATAAGCTTGTGGTTGCACACATGAC 1019
||.||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||.||||||||
Sbjct 1333 CCATGTCTTTATATACTGACATTTGGTTTTGTGTCGGCTAAAATCACTAATAAGCTTGTGGTTGCTCACATGAC 1406
Query 1020 GAAAAGTGAAATGCATTTGCATGACACAGCATTCATAGGTCCGGCACTTTTGTTTCTGGACCAGTATTTTAACA 1093
||||||||||||||||||||||||||||||||||||||||||.||||||.||||||||||||||||||||||||
Sbjct 1407 GAAAAGTGAAATGCATTTGCATGACACAGCATTCATAGGTCCAGCACTTCTGTTTCTGGACCAGTATTTTAACA 1480
Query 1094 GCTTTATTGATGAATATATTGTACTTTGGATTGCCCTGGTTTTCTCTTTCTTTGATTTGATCCGCTACTGTGTC 1167
||||.||||||||||||||.|||||||||||||||.||.|.||||||||||||||||||||.||.|||||||||
Sbjct 1481 GCTTCATTGATGAATATATAGTACTTTGGATTGCCTTGATCTTCTCTTTCTTTGATTTGATTCGTTACTGTGTC 1554
Query 1168 AGTGTTTGCAATCAGATTGCGTCTCACCTGCACATACATGTCTTCAGAATCAAGGTCTCTACAGCTCATTCTAA 1241
||||||||||||||||||||.|||||||||||.|||||||||||||||||.||.|.||||||||||||.|||||
Sbjct 1555 AGTGTTTGCAATCAGATTGCATCTCACCTGCATATACATGTCTTCAGAATTAAAGCCTCTACAGCTCACTCTAA 1628
Query 1242 TCATCAT------------------------------------------------------------------- 1248
||||||.
Sbjct 1629 TCATCACTAAGGATGTGTCTGGGTTCTACTAAGCTCATGGTTCCTGCAAGAAGGAATTCGAACATATTAAGGAC 1702
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 1703 AACAGGGGTGGATAAGAACAAATATAATTTATAATAATCAATGTCATATAACTTTCATTCTTTGTTACTGGTAA 1776
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 1777 CACTCCCTAACTGTCCTGTTTAGAATGGGAATTTCAGGCCCCATCCTATAAACTGAATATGTTGTCAAACAGGG 1850
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 1851 TTTGGCTCCAGAAAGCATGCAGGGAAACTACCGAGTGTTTGTGATTATTCAGAATATCACTATCATAGGAGCAC 1924
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 1925 ATCCCCACTGGTGGTAAATCTAATGTAAAATTTTTGCAGGCCAAAAGATTGTTGCTTTATGATTTTAACAAATC 1998
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 1999 ATCATCTTTTCGTAACACCTTGTTTATTGTCTTCTCAGATGTTCTTTTGTAAGGAGCTCAGCTTGTGGCACATA 2072
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 2073 CATCTTACTAGCTTGTGAGGTGAGAGCAGTGATAAGGACCTTAAATTTAGATGGAAGGTTTCCTGTCTGTATAT 2146
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 2147 TGTTGAGGAAGTGATTTTATTATCAATCAAGAAATGGTGTTTCTCACGGGCTTGGGAAATCTTGATAGCATGCA 2220
Query 1249 --------------------------------------------------------------- 1248
Sbjct 2221 GATAATGTGGTAACTTTGTCAATCCATTTTATTTTTTTAAATAAATATATGATCTCAGAACCA 2283
