Transcript: Mouse XR_001783786.1

PREDICTED: Mus musculus choline/ethanolaminephosphotransferase 1 (Cept1), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cept1 (99712)
Length:
2283
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001783786.1
NBCI Gene record:
Cept1 (99712)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001783786.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000035972 GTACAAATTACTTCCGTGTAA pLKO.1 1172 3UTR 100% 4.950 6.930 N CEPT1 n/a
2 TRCN0000103319 CCATCATTGGACTATCAATAA pLKO.1 429 3UTR 100% 13.200 9.240 N Cept1 n/a
3 TRCN0000325744 CCATCATTGGACTATCAATAA pLKO_005 429 3UTR 100% 13.200 9.240 N Cept1 n/a
4 TRCN0000103315 CCCATCCTATAAACTGAATAT pLKO.1 1816 3UTR 100% 13.200 9.240 N Cept1 n/a
5 TRCN0000325733 CCCATCCTATAAACTGAATAT pLKO_005 1816 3UTR 100% 13.200 9.240 N Cept1 n/a
6 TRCN0000103318 GCAGTACAACTTGGGACAAAT pLKO.1 677 3UTR 100% 13.200 9.240 N Cept1 n/a
7 TRCN0000325734 GCAGTACAACTTGGGACAAAT pLKO_005 677 3UTR 100% 13.200 9.240 N Cept1 n/a
8 TRCN0000103317 CCAAATCTCATCACCATCATT pLKO.1 416 3UTR 100% 5.625 3.938 N Cept1 n/a
9 TRCN0000325656 CCAAATCTCATCACCATCATT pLKO_005 416 3UTR 100% 5.625 3.938 N Cept1 n/a
10 TRCN0000103316 GCTGTTATGATCTACAAGAAA pLKO.1 1285 3UTR 100% 5.625 3.938 N Cept1 n/a
11 TRCN0000325657 GCTGTTATGATCTACAAGAAA pLKO_005 1285 3UTR 100% 5.625 3.938 N Cept1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001783786.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07592 pDONR223 100% 51.2% None (many diffs) n/a
2 ccsbBroad304_07592 pLX_304 0% 51.2% V5 (many diffs) n/a
3 TRCN0000479564 CGCGGTAAGCACCTCATGCGCCGC pLX_317 33.5% 51.2% V5 (many diffs) n/a
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