Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07628
- Subject:
- XR_001746995.2
- Aligned Length:
- 4678
- Identities:
- 2468
- Gaps:
- 2171
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTAGATAGGTAGGTAGGTAGATTAGATTAAATTGGATTAGATTTGATGAGATAAACAGGTTTGTGTTCAGGGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACACGAGGTTAAGCAAGCCTAAGCAGGTTTTTTGGTTGAAGGTCTTCTCAGAACTTCTAGTATGTCAATATGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGTAGATCTCTAAGTGGCAGGGACAGAGACTGGGGTACAGATTTCCCAAACATATTTGTTTAAGAAACCTGCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTTTTCCCCCAGAATCTTTTGTGGAACTTTTGCCTCATGGAACACAATTTCAGAAATAATTTATACGTGATGAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGTGTAGAATGTTTTTCTTGTCAGGATTTTCAGTTTAGGTAAGGCCAAGGCATTTTTTTTTTACAGTACATTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAACTAGATATGATATCAAGAGAAAAAATTATGCTTGGCTACTTAGAATGACATACTATTTTTAATAAATTTGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTGTATCATCAGTATTACTATTCAGTGTAGGGTATTTTTTATGCCCAATGCTAATGTGCTATGACTTGGTA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAATTAATTTACCCTAGGATTTACATAACCAGATTAATAAATTGTGAGTTGTAGGGAGTCTTGGAATTGCCTGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATTGACATTAAAATATTTGTTTTGAGAAATTTTTTTTTAACCTTGGTTTTACGTAACCAAGGACATACACTACA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTATAAATATTGTGATGGTTTATTTTTCCAAACTTTTCTGAATGTGGGGTGCCCATTGAGTAATAATGCAAATC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACCAATGACTTTGTAAAAATTGACATGATGAGTAGAACTGCAGAATTCAAAGATGATGATGATGATTTTTGAAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CGATGTTTCCAGAATTGTTAAATTATGTATCAACATATGTTAACTGCAACTTCTCATGTTTAATGATGTTTACA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATTAATACAATACCATACTCGCCAGTATAATACTAACAGTCATAATTAACTCAGAATAGATTCTTTGAAGTGGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCAAAGGGCTTTTCATAATAAATAAGTAGCCTCTAATCAGCTAATATAAAGTGGGTATTTTTTAGGATGTGAGA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGTACTGGTATGTCTGATAAAACATATAATTTAGGTTGACAAAATGAGTTTGAATGATCCAGATTCACTACCCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAGTCAGAAGGAAGTCTGACATTCCAGTGAAAGCTTTATTTAGACAGAGACAAGGAATCTTTGAGATAACAGGC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTTGGACTGTGCTATCTTGAGTGTTAGAGCTGAGTAGTTTTCCCAGAATCTCTAAGTCCTTTTTATGCTCTTTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATGAATGAATAGAATTAGTAAAAGATAAATAAATTTTTTCTTTTGGATTTCTTAACCAGTGGAAAAAATGTTGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTTTAAAAGTTCATAAAATCAAATTTTGCTTAAGAATATGTTATTTCCACTTGTGAGGCCAGCCTGGTAGACCT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTGGGATCCTTTTCTGTTCACTCACACACCACTGAGATAAGGAGTGAAGTGTGGGCTAAATAGGGCTGAGGCTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGGCAAGGGCATTTCTGCCAGAGCACCAGAGACGTCAGCATCTCAAGGGCACTGTGGTATGGAAAAGGACGCCA 1554
Query 1 ------------------------------------------ATGAGGGTCCCTGTATTTGAGGATATAAAAGA 32
||||||||||||||||||||||||||||||||
Sbjct 1555 CATGAGTAAATTTTAAAAATATAAATATTTTAAAGGGTAAAAATGAGGGTCCCTGTATTTGAGGATATAAAAGA 1628
Query 33 TGAAACTGAAGAAGAAAAGATAGGGGAAGAAGAAAATGAAGAAGACCAGGTCTTCTATAAGCCTGTTATTGAAG 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TGAAACTGAAGAAGAAAAGATAGGGGAAGAAGAAAATGAAGAAGACCAGGTCTTCTATAAGCCTGTTATTGAAG 1702
Query 107 ACTTAAGCATGGAATTGGCCAGAAAATGCACGGAACTCATTAGCGATATCCGTTATAAAGAAGAGTTTAAAAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 ACTTAAGCATGGAATTGGCCAGAAAATGCACGGAACTCATTAGCGATATCCGTTATAAAGAAGAGTTTAAAAAG 1776
Query 181 TCCAAGGATAAGTGTACATTTGTGACTGACAGTCCTATGCTAAACCATGTAAAAAATATCGGTGCTTTTATTTC 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TCCAAGGATAAGTGTACATTTGTGACTGACAGTCCTATGCTAAACCATGTAAAAAATATCGGTGCTTTTATTTC 1850
Query 255 TGAGGCAAAATACAAAGGCACCATTAAAGCTGACCTTTCTAATTCTCTTTATAAGCGGATGCCAGCCACAATTG 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TGAGGCAAAATACAAAGGCACCATTAAAGCTGACCTTTCTAATTCTCTTTATAAGCGGATGCCAGCCACAATTG 1924
Query 329 ACAGTGTTTTTGCAGGAGAAGTTACACAGCTCCAGAGTGAGGTGGCCTACAAGCAGAAACATGATGCTGCCAAA 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 ACAGTGTTTTTGCAGGAGAAGTTACACAGCTCCAGAGTGAGGTGGCCTACAAGCAGAAACATGATGCTGCCAAA 1998
Query 403 GGATTCTCAGATTATGCCCACATGAAGGAGCCCCCTGAGGTTAAACATGCCATGGAGGTCAATAAACACCAGAG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GGATTCTCAGATTATGCCCACATGAAGGAGCCCCCTGAGGTTAAACATGCCATGGAGGTCAATAAACACCAGAG 2072
Query 477 TAATATTTCTTATAGGAAAGACGTGCAGGACACCCACACGTACAGTGCAGAACTTGACCGACCAGACATCAAGA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 TAATATTTCTTATAGGAAAGACGTGCAGGACACCCACACGTACAGTGCAGAACTTGACCGACCAGACATCAAGA 2146
Query 551 TGGCAACCCAGATCTCTAAGATCATAAGCAATGCAGAATACAAGAAAGGACAAGGAATAATGAATAAAGAGCCC 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 TGGCAACCCAGATCTCTAAGATCATAAGCAATGCAGAATACAAGAAAGGACAAGGAATAATGAATAAAGAGCCC 2220
Query 625 GCTGTAATTGGAAGACCAGATTTTGAACATGCCGTGGAAGCTTCTAAACTTTCTAGTCAAATTAAATACAAAGA 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 GCTGTAATTGGAAGACCAGATTTTGAACATGCCGTGGAAGCTTCTAAACTTTCTAGTCAAATTAAATACAAAGA 2294
Query 699 AAAATTTGATAATGAAATGAAGGATAAGAAACATCATTACAATCCTCTTGAAAGTGCTTCTTTTAGGCAGAATC 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 AAAATTTGATAATGAAATGAAGGATAAGAAACATCATTACAATCCTCTTGAAAGTGCTTCTTTTAGGCAGAATC 2368
Query 773 AGCTTGCTGCTACACTGGCGAGCAATGTGAAGTACAAGAAAGACATTCAAAATATGCATGATCCAGTTTCAGAT 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 AGCTTGCTGCTACACTGGCGAGCAATGTGAAGTACAAGAAAGACATTCAAAATATGCATGATCCAGTTTCAGAT 2442
Query 847 CTCCCAAATTTGTTGTTTTTAGACCATGTTTTGAAAGCCAGCAAAATGCTCAGCGGCCGAGAATATAAAAAGCT 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 CTCCCAAATTTGTTGTTTTTAGACCATGTTTTGAAAGCCAGCAAAATGCTCAGCGGCCGAGAATATAAAAAGCT 2516
Query 921 CTTTGAGGAAAACAAAGGAATGTATCATTTTGATGCAGATGCTGTGGAACATCTGCACCATAAAGGCAATGCCG 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 CTTTGAGGAAAACAAAGGAATGTATCATTTTGATGCAGATGCTGTGGAACATCTGCACCATAAAGGCAATGCCG 2590
Query 995 TCCTCCAAAGTCAGGTGAAATATAAAGAAGAATATGAGAAAAATAAGGGAAAGCCAATGCTTGAATTTGTTGAG 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 TCCTCCAAAGTCAGGTGAAATATAAAGAAGAATATGAGAAAAATAAGGGAAAGCCAATGCTTGAATTTGTTGAG 2664
Query 1069 ACACCATCATATCAAGCTTCAAAGGAGGCTCAAAAGATGCAAAGTGAAAAAGTTTACAAAGAGGATTTTGAGAA 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 ACACCATCATATCAAGCTTCAAAGGAGGCTCAAAAGATGCAAAGTGAAAAAGTTTACAAAGAGGATTTTGAGAA 2738
Query 1143 GGAGATTAAAGGAAGGTCATCACTGGATTTAGACAAGACTCCAGAATTTTTACATGTAAAGTACATCACCAACC 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 GGAGATTAAAGGAAGGTCATCACTGGATTTAGACAAGACTCCAGAATTTTTACATGTAAAGTACATCACCAACC 2812
Query 1217 TTCTGAGGGAGAAAGAATATAAAAAAGATTTGGAAAATGAGATAAAAGGGAAAGGAATGGAACTTAATTCAGAA 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 TTCTGAGGGAGAAAGAATATAAAAAAGATTTGGAAAATGAGATAAAAGGGAAAGGAATGGAACTTAATTCAGAA 2886
Query 1291 GTTCTTGATATCCAAAGAGCAAAGCGAGCCTCTGAAATGGCAAGTGAGAAAGAATACAAGAAAGACCTGGAGTC 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 GTTCTTGATATCCAAAGAGCAAAGCGAGCCTCTGAAATGGCAAGTGAGAAAGAATACAAGAAAGACCTGGAGTC 2960
Query 1365 AATAATTAAAGGGAAAGGAATGCAAGCTGGCACTGACACCCTTGAAATGCAGCATGCCAAGAAGGCTGCAGAGA 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 AATAATTAAAGGGAAAGGAATGCAAGCTGGCACTGACACCCTTGAAATGCAGCATGCCAAGAAGGCTGCAGAGA 3034
Query 1439 TAGCGAGTGAGAAAGACTATAAAAGAGATCTGGAGACTGAAATTAAAGGGAAAGGGATGCAGGTGAGCACAGAC 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 TAGCGAGTGAGAAAGACTATAAAAGAGATCTGGAGACTGAAATTAAAGGGAAAGGGATGCAGGTGAGCACAGAC 3108
Query 1513 ACTCTTGATGTCCAGAGAGCTAAGAAAGCATCCGAGATGGCCAGCCAGAAACAATACAAGAAGGACTTAGAAAA 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 ACTCTTGATGTCCAGAGAGCTAAGAAAGCATCCGAGATGGCCAGCCAGAAACAATACAAGAAGGACTTAGAAAA 3182
Query 1587 TGAAATTAAAGGGAAAGGAATGCAAGTGAGCATGGATATCCCAGATATCCTTCGAGCCAAGAGGACATCTGAAA 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 TGAAATTAAAGGGAAAGGAATGCAAGTGAGCATGGATATCCCAGATATCCTTCGAGCCAAGAGGACATCTGAAA 3256
Query 1661 TCTATAGCCAGAGAAAGTATAAAGATGAAGCAGAGAAGATGCTTTCTAACTATTCTACCATAGCAGATACTCCT 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 TCTATAGCCAGAGAAAGTATAAAGATGAAGCAGAGAAGATGCTTTCTAACTATTCTACCATAGCAGATACTCCT 3330
Query 1735 GAAATTCAGAGAATTAAGACAACTCAACAAAACATTAGTGCGGTATTTTATAAGAAAGAAGTGGGAGCTGGCAC 1808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 GAAATTCAGAGAATTAAGACAACTCAACAAAACATTAGTGCGGTATTTTATAAGAAAGAAGTGGGAGCTGGCAC 3404
Query 1809 TGCAGTGAAAGATAGCCCAGAGATCGAACGAGTGAAGAAAAATCAGCAGAATATTAGTTCAGTGAAATACAAAG 1882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 TGCAGTGAAAGATAGCCCAGAGATCGAACGAGTGAAGAAAAATCAGCAGAATATTAGTTCAGTGAAATACAAAG 3478
Query 1883 AAGAGATTAAACATGCAACAGCCATTTCTGATCCTCCAGAACTAAAGAGAGTTAAAGAAAACCAGAAGAACATC 1956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 AAGAGATTAAACATGCAACAGCCATTTCTGATCCTCCAGAACTAAAGAGAGTTAAAGAAAACCAGAAGAACATC 3552
Query 1957 AGCAATCTCCAGTATAAAGAGCAAAACTACAAGGCCACTCCGGTAAGCATGACCCCGGAGATAGAGAGAGTGAG 2030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 AGCAATCTCCAGTATAAAGAGCAAAACTACAAGGCCACTCCGGTAAGCATGACCCCGGAGATAGAGAGAGTGAG 3626
Query 2031 GCGAAACCAGGAGCAGCTGAGTGCGGTAAAATATAAGGGAGAACTTCAACGGGGAACTGCAATTTCTGATCCAC 2104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 GCGAAACCAGGAGCAGCTGAGTGCGGTAAAATATAAGGGAGAACTTCAACGGGGAACTGCAATTTCTGATCCAC 3700
Query 2105 CAGAGCTGAAGAGGGCAAAAGAAAACCAGAAAAACATCAGCAA--TGTTTATTACAGAGGTCAGCTGGGAAGAG 2176
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3701 CAGAGCTGAAGAGGGCAAAAGAAAACCAGAAAAACATCAGCAATGTGTTTATTACAGAGGTCAGCTGGGAAGAG 3774
Query 2177 CTACCACTTTAAGTGTAACTCCTGAAATGGAAAGAGTGAAGAAGAATCAAGAAAATATTAGCTCGGTAAAATAT 2250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 CTACCACTTTAAGTGTAACTCCTGAAATGGAAAGAGTGAAGAAGAATCAAGAAAATATTAGCTCGGTAAAATAT 3848
Query 2251 ACCCAGGACCATAAACAGATGAAAGGTAGACCAAGTCTGATTTTAGATACACCTGCTATGAGACATGTTAAAGA 2324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 ACCCAGGACCATAAACAGATGAAAGGTAGACCAAGTCTGATTTTAGATACACCTGCTATGAGACATGTTAAAGA 3922
Query 2325 AGCACAAAATCATATTTCAATGGTAAAAT---ACCATGAAGATTTTGAAAA------AACAAAGGGGAGAGGCT 2389
|||||||||||||||||||||||||...| |||| ||..|||.|.|||| ||..||.|||.|
Sbjct 3923 AGCACAAAATCATATTTCAATGGTAGGGTCCAACCA-GATCATTCTTAAAACATGCTAAGGAATGGGCG----- 3990
Query 2390 TTACTCCCGTCGTGGACGATCCTGTG-ACAGAGAGAGTGAGGAAGAACACCCAGGTGGTCAGCGATGCTGC-CT 2461
|||||.||| ||.|| || ||..|.||.| ||
Sbjct 3991 -----------------GATCCAGTGCACGGA-----TG----------------------GCATTACTTCACT 4020
Query 2462 ATAAAGGGGTCC----ACCCTCACATCGTGGAGATGGACAGGAGACCTGGAATCATTG--TTGACCTCAAAGTT 2529
||.|| ||| ||...||.|.|.||||.||| ||| ||| |||.| ||
Sbjct 4021 ATTAA----TCCGATAACTAACAAAGCATGGAAATG-----------TGG-----TTGGCTTGTC-------TT 4067
Query 2530 T-------GGCGCA---CAGATCCTGGCTCCATCTTCGACCTTG--ATCCCCTGGAAGACAATATTCAGTCTAG 2591
| ||.||| |..||| ||..|| ||.|..|||| ||.|||.||||||
Sbjct 4068 TTGAGGGAGGGGCATTTCTAATC---------------ACACTGAAATGCAGTGGA----AACATTTAGTCTA- 4121
Query 2592 AAGTCTCCATA---------TGCTCTCTGAAAAGGCGAGTCACTATAGGCGACACTGGTCTCGATCCCATTCCA 2656
||| |.|||..|||
Sbjct 4122 --------ATAAAATGATTTTTCTCAGTGA-------------------------------------------- 4143
Query 2657 GCAGTACTTTCGGTACAGGTCTCGGAGACGACAGGTCAGAAATCTCCGAGATTTACCCTAGCTTTTCATGCTGC 2730
Sbjct 4144 -------------------------------------------------------------------------- 4143
Query 2731 AGTGAGGTAACAAGACCGTCTGATGAAGGAGCACCTGTTCTTCCCGGAGCCTATCAGCAAAGCCATTCCCAAGG 2804
Sbjct 4144 -------------------------------------------------------------------------- 4143
Query 2805 CTATGGCTACATGCACCAGACCAGTGTGTCATCCATGAGATCAATGCAGCATTCACCAAATCTAAGGACCTACC 2878
Sbjct 4144 -------------------------------------------------------------------------- 4143
Query 2879 GAGCCATGTACGATTACAGTGCCCAGGATGAAGACGAGGTCTCCTTTAGAGACGGCGACTACATCGTCAACGTG 2952
Sbjct 4144 -------------------------------------------------------------------------- 4143
Query 2953 CAGCCTATTGACGATGGCTGGATGTACGGCACAGTGCAGAGAACGGGGAGAACAGGAATGCTCCCAGCGAATTA 3026
Sbjct 4144 -------------------------------------------------------------------------- 4143
Query 3027 CATTGAGTTTGTTAAT 3042
Sbjct 4144 ---------------- 4143
