Construct: ORF ccsbBroadEn_07628

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017398.1_s300c1, BRDN0000394427
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NEBL (10529)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10529 NEBL nebulette NM_006393.2 99.9% 100% 2997A>G
2 human 10529 NEBL nebulette XM_011519291.2 97.5% 97% (many diffs)
3 human 10529 NEBL nebulette XM_017015468.1 97.5% 97% (many diffs)
4 human 10529 NEBL nebulette XM_005252342.5 96.6% 96.6% 477_478ins102;2895A>G
5 human 10529 NEBL nebulette XM_005252343.5 91.9% 92% 2517_2518ins243;2754A>G
6 human 10529 NEBL nebulette XM_005252344.5 86.5% 82.6% (many diffs)
7 human 10529 NEBL nebulette XR_001746996.1 69.7% (many diffs)
8 human 10529 NEBL nebulette XR_001746995.2 52.7% (many diffs)
9 human 10529 NEBL nebulette XR_242691.5 27.3% (many diffs)
10 human 10529 NEBL nebulette NM_213569.2 23% 18.3% (many diffs)
11 mouse 74103 Nebl nebulette XM_011238990.2 83.5% 85.5% (many diffs)
12 mouse 74103 Nebl nebulette XM_006497556.3 76.9% 78.7% (many diffs)
13 mouse 74103 Nebl nebulette XM_006497557.3 74.1% 75.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3111
ORF length:
3042
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAGGGTCCCT GTATTTGAGG ATATAAAAGA TGAAACTGAA GAAGAAAAGA
121TAGGGGAAGA AGAAAATGAA GAAGACCAGG TCTTCTATAA GCCTGTTATT GAAGACTTAA
181GCATGGAATT GGCCAGAAAA TGCACGGAAC TCATTAGCGA TATCCGTTAT AAAGAAGAGT
241TTAAAAAGTC CAAGGATAAG TGTACATTTG TGACTGACAG TCCTATGCTA AACCATGTAA
301AAAATATCGG TGCTTTTATT TCTGAGGCAA AATACAAAGG CACCATTAAA GCTGACCTTT
361CTAATTCTCT TTATAAGCGG ATGCCAGCCA CAATTGACAG TGTTTTTGCA GGAGAAGTTA
421CACAGCTCCA GAGTGAGGTG GCCTACAAGC AGAAACATGA TGCTGCCAAA GGATTCTCAG
481ATTATGCCCA CATGAAGGAG CCCCCTGAGG TTAAACATGC CATGGAGGTC AATAAACACC
541AGAGTAATAT TTCTTATAGG AAAGACGTGC AGGACACCCA CACGTACAGT GCAGAACTTG
601ACCGACCAGA CATCAAGATG GCAACCCAGA TCTCTAAGAT CATAAGCAAT GCAGAATACA
661AGAAAGGACA AGGAATAATG AATAAAGAGC CCGCTGTAAT TGGAAGACCA GATTTTGAAC
721ATGCCGTGGA AGCTTCTAAA CTTTCTAGTC AAATTAAATA CAAAGAAAAA TTTGATAATG
781AAATGAAGGA TAAGAAACAT CATTACAATC CTCTTGAAAG TGCTTCTTTT AGGCAGAATC
841AGCTTGCTGC TACACTGGCG AGCAATGTGA AGTACAAGAA AGACATTCAA AATATGCATG
901ATCCAGTTTC AGATCTCCCA AATTTGTTGT TTTTAGACCA TGTTTTGAAA GCCAGCAAAA
961TGCTCAGCGG CCGAGAATAT AAAAAGCTCT TTGAGGAAAA CAAAGGAATG TATCATTTTG
1021ATGCAGATGC TGTGGAACAT CTGCACCATA AAGGCAATGC CGTCCTCCAA AGTCAGGTGA
1081AATATAAAGA AGAATATGAG AAAAATAAGG GAAAGCCAAT GCTTGAATTT GTTGAGACAC
1141CATCATATCA AGCTTCAAAG GAGGCTCAAA AGATGCAAAG TGAAAAAGTT TACAAAGAGG
1201ATTTTGAGAA GGAGATTAAA GGAAGGTCAT CACTGGATTT AGACAAGACT CCAGAATTTT
1261TACATGTAAA GTACATCACC AACCTTCTGA GGGAGAAAGA ATATAAAAAA GATTTGGAAA
1321ATGAGATAAA AGGGAAAGGA ATGGAACTTA ATTCAGAAGT TCTTGATATC CAAAGAGCAA
1381AGCGAGCCTC TGAAATGGCA AGTGAGAAAG AATACAAGAA AGACCTGGAG TCAATAATTA
1441AAGGGAAAGG AATGCAAGCT GGCACTGACA CCCTTGAAAT GCAGCATGCC AAGAAGGCTG
1501CAGAGATAGC GAGTGAGAAA GACTATAAAA GAGATCTGGA GACTGAAATT AAAGGGAAAG
1561GGATGCAGGT GAGCACAGAC ACTCTTGATG TCCAGAGAGC TAAGAAAGCA TCCGAGATGG
1621CCAGCCAGAA ACAATACAAG AAGGACTTAG AAAATGAAAT TAAAGGGAAA GGAATGCAAG
1681TGAGCATGGA TATCCCAGAT ATCCTTCGAG CCAAGAGGAC ATCTGAAATC TATAGCCAGA
1741GAAAGTATAA AGATGAAGCA GAGAAGATGC TTTCTAACTA TTCTACCATA GCAGATACTC
1801CTGAAATTCA GAGAATTAAG ACAACTCAAC AAAACATTAG TGCGGTATTT TATAAGAAAG
1861AAGTGGGAGC TGGCACTGCA GTGAAAGATA GCCCAGAGAT CGAACGAGTG AAGAAAAATC
1921AGCAGAATAT TAGTTCAGTG AAATACAAAG AAGAGATTAA ACATGCAACA GCCATTTCTG
1981ATCCTCCAGA ACTAAAGAGA GTTAAAGAAA ACCAGAAGAA CATCAGCAAT CTCCAGTATA
2041AAGAGCAAAA CTACAAGGCC ACTCCGGTAA GCATGACCCC GGAGATAGAG AGAGTGAGGC
2101GAAACCAGGA GCAGCTGAGT GCGGTAAAAT ATAAGGGAGA ACTTCAACGG GGAACTGCAA
2161TTTCTGATCC ACCAGAGCTG AAGAGGGCAA AAGAAAACCA GAAAAACATC AGCAATGTTT
2221ATTACAGAGG TCAGCTGGGA AGAGCTACCA CTTTAAGTGT AACTCCTGAA ATGGAAAGAG
2281TGAAGAAGAA TCAAGAAAAT ATTAGCTCGG TAAAATATAC CCAGGACCAT AAACAGATGA
2341AAGGTAGACC AAGTCTGATT TTAGATACAC CTGCTATGAG ACATGTTAAA GAAGCACAAA
2401ATCATATTTC AATGGTAAAA TACCATGAAG ATTTTGAAAA AACAAAGGGG AGAGGCTTTA
2461CTCCCGTCGT GGACGATCCT GTGACAGAGA GAGTGAGGAA GAACACCCAG GTGGTCAGCG
2521ATGCTGCCTA TAAAGGGGTC CACCCTCACA TCGTGGAGAT GGACAGGAGA CCTGGAATCA
2581TTGTTGACCT CAAAGTTTGG CGCACAGATC CTGGCTCCAT CTTCGACCTT GATCCCCTGG
2641AAGACAATAT TCAGTCTAGA AGTCTCCATA TGCTCTCTGA AAAGGCGAGT CACTATAGGC
2701GACACTGGTC TCGATCCCAT TCCAGCAGTA CTTTCGGTAC AGGTCTCGGA GACGACAGGT
2761CAGAAATCTC CGAGATTTAC CCTAGCTTTT CATGCTGCAG TGAGGTAACA AGACCGTCTG
2821ATGAAGGAGC ACCTGTTCTT CCCGGAGCCT ATCAGCAAAG CCATTCCCAA GGCTATGGCT
2881ACATGCACCA GACCAGTGTG TCATCCATGA GATCAATGCA GCATTCACCA AATCTAAGGA
2941CCTACCGAGC CATGTACGAT TACAGTGCCC AGGATGAAGA CGAGGTCTCC TTTAGAGACG
3001GCGACTACAT CGTCAACGTG CAGCCTATTG ACGATGGCTG GATGTACGGC ACAGTGCAGA
3061GAACGGGGAG AACAGGAATG CTCCCAGCGA ATTACATTGA GTTTGTTAAT TTGCCAACTT
3121TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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