Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07648
- Subject:
- NM_001190856.1
- Aligned Length:
- 2068
- Identities:
- 1263
- Gaps:
- 626
Alignment
Query 1 ATGAGCAACTACAGTGTGTCACTGGTTGGCCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAA 74
|||||||||||||||||||||.||||.||||||||||||||||||||||||||.||.||.||.|||||||||||
Sbjct 1 ATGAGCAACTACAGTGTGTCATTGGTCGGCCCAGCTCCTTGGGGTTTCCGGCTCCAAGGTGGCAAGGATTTCAA 74
Query 75 CATGCCTCTGACAATCTCTAGTCTAAAAGATGGCGGCAAGGCAGCCCAGGCAAATGTAAGAATAGGCGATGTGG 148
||||||||||||||||||||||||.||.|||||.|||||||||.|.||||||.||||.||||||||.||.||||
Sbjct 75 CATGCCTCTGACAATCTCTAGTCTGAAGGATGGTGGCAAGGCATCTCAGGCACATGTCAGAATAGGGGACGTGG 148
Query 149 TTCTCAGCATTGATGGAATAAATGCACAAGGAATGACTCATCTTGAAGCCCAGAATAAGATTAAGGGTTGTACA 222
||||||||||.|||||.||.|.||||||.||||||||.|||||||||||||||||.||||||||||.||||||.
Sbjct 149 TTCTCAGCATCGATGGGATCAGTGCACAGGGAATGACGCATCTTGAAGCCCAGAACAAGATTAAGGCTTGTACG 222
Query 223 GGCTCTTTGAATATGACTCTGCAAAGAGCATCTGCTGCACCCAAGCCTGAGCCGGTTCCTGTTCAAAAGGGAGA 296
|||||.||||||||||||||.||||||||.||.||||||.|||||..||||||||||
Sbjct 223 GGCTCCTTGAATATGACTCTACAAAGAGCTTCAGCTGCAGCCAAGAGTGAGCCGGTT----------------- 279
Query 297 ACCTAAAGAAGTAGTTAAACCTGTGCCCATTACATCTCCTGCTGTGTCCAAAGTCACTTCCACAAACAACATGG 370
||| |||||
Sbjct 280 ------------------------------------TCC------GTCCA------------------------ 287
Query 371 CCTACAATAAGGCACCACGGCCTTTTGGTTCTGTGTCTTCACCAAAAGTCACATCCATCCCATCACCATCGTCT 444
Sbjct 288 -------------------------------------------------------------------------- 287
Query 445 GCCTTCACCCCAGCCCATGCGACCACCTCATCACATGCTTCCCCTTCACCCGTGGCTGCCGTCACTCCTCCCCT 518
Sbjct 288 -------------------------------------------------------------------------- 287
Query 519 GTTCGCTGCATCTGGACTGCATGCTAATGCCAATCTTAGTGCTGACCAGTCTCCATCTGCACTGAGCGCTGGTA 592
Sbjct 288 -------------------------------------------------------------------------- 287
Query 593 AAACTGCAGTTAATGTCCCACGGCAGCCCACAGTCACCAGCGTGTGTTCCGAGACTTCTCAGGAGCTAGCAGAG 666
|.|||||||||||||||||||||||||||||.||.|||||||||||||||||
Sbjct 288 ----------------------GAAGCCCACAGTCACCAGCGTGTGTTCCGAGTCTGCTCAGGAGCTAGCAGAG 339
Query 667 GGACAGAGAAGAGGATCCCAGGGTGACAGTAAACAGCAAAATGGCCCACCAAGAAAACACATTGTGGAGCGCTA 740
||||||||||||||||||||||||||||.|||.|||||||||||||||||||||||||||||||||||||||.|
Sbjct 340 GGACAGAGAAGAGGATCCCAGGGTGACATTAAGCAGCAAAATGGCCCACCAAGAAAACACATTGTGGAGCGCAA 413
Query 741 TACAGAGTTTTATCATGTACCCACTCACAGTGATGCCAGCAAGAAGAGACTGATTGAGGATACTGAAGACTGGC 814
.||.|||||||||||..||||||||||||||||||||||||||||..|.|||||||||||.|||||.|||||||
Sbjct 414 CACGGAGTTTTATCACATACCCACTCACAGTGATGCCAGCAAGAAACGGCTGATTGAGGACACTGAGGACTGGC 487
Query 815 GTCCAAGGACTGGAACAACTCAGTCTCGCTCTTTCCGAATCCTTGCCCAGATCACTGGGACTGAACATTTGAAA 888
|.||..||||||||||.|||||||||||.||||||||.||||||||||||||||||||||||||.|||.|||.|
Sbjct 488 GCCCCCGGACTGGAACGACTCAGTCTCGTTCTTTCCGGATCCTTGCCCAGATCACTGGGACTGAGCATCTGACA 561
Query 889 GAATCTGAAGCCGATAATACAAAGAAGGCAAAT-----------------AACT----------CTCAGGA--- 932
|||||||||...||.|||||.|||||||||||| |||| ||..|||
Sbjct 562 GAATCTGAAAATGACAATACGAAGAAGGCAAATGTAAGCAGGTCTACAAGAACTGTAGAAGGTGCTTTGGAAGG 635
Query 933 ----------------GCCTTCTCC-------------GCAGT-------------------TGGCTTCCTCGG 958
||||||||| .|||| .||||.||.|.|
Sbjct 636 CTTTGGAAACTTTCCTGCCTTCTCCCCTCCTACTAGATACAGTGCTGTAGTCGTCAGTGATGCGGCTGCCACTG 709
Query 959 T-------------------------------------------AGCTTCCA--------------CACGGAGC 975
| |.||.||| |||.|.||
Sbjct 710 TGTCTGCTGCTCTCGCTGCGAAAACCAGGCTCTTCGGCCCTGAAAACTCCCAGTCTCTTCTGGATGCACTGTGC 783
Query 976 AT---------------GCC-----------------------------------CGAGAGCCT---------- 989
|| ||| ||||.|.||
Sbjct 784 ATCAGCACTGTCCCCAAGCCTCTAGCTCTTTCCTGTCTTCAGTCCTCTGAGGAGTCGAGTGGCTCTGTCCACGT 857
Query 990 --------------GGAC-----AGCC-------CAACC-------TCTGGCAG----ACC------------- 1013
|.|| |||| ||||| ||||| || |||
Sbjct 858 TAAGAAGAGCAGTAGCACCCAGGAGCCTTCTCAGCAACCGGCGTCATCTGG-AGCTTCACCTCTGAGCGCGTCT 930
Query 1014 -AGG--------------GGTTACCA------------------GCCTCACAACTGCAGCTGCCTTCAAGCCTG 1054
||| |||| ||| |||||....|.||.|||||.||||||||||
Sbjct 931 GAGGGCCCCGAGAGCCCAGGTT-CCAGCAGGCCCTCGGTGGCTGGCCTCCGCTCCGCTGCTGCTTTCAAGCCTG 1003
Query 1055 TAGGATCCACTGGCGTCATCAAGTCACCAAGCTGGCAACGGCCAAACCAAGGAGTACCTTCCACTGGAAGAATC 1128
||||||||||..||| ||||||||||.||||||||.||.||||||||||.||.||||||.|||||.|||||.
Sbjct 1004 TAGGATCCACCAGCG---TCAAGTCACCTAGCTGGCAGCGTCCAAACCAAGCAGCACCTTCTACTGGGAGAATT 1074
Query 1129 TCAAACAGCGCTGCTTACTCAGGATCAGTGGCACCAGCCAACTCAG-CTTTGGGACAAACCCAGCCAAGTGACC 1201
|||||||..||...||..|||||..|||.||| | ||.||||.|...|||||||||||||||
Sbjct 1075 TCAAACAATGCACGTTCTTCAGGTACAGGGGC-------------GTCTGTGGGGCCTCCCCAGCCAAGTGACC 1135
Query 1202 AGGACACTTTAGTGCAAAGAGCTGAGCACATTCCAGCAGGGAAACGAACTCCGATGTGCGCCCATTGTAACCAG 1275
|.|||||..|.|||||.|||||.||.|||||||||||.||.||.||.||.||.|||||.|||||.||.|||||.
Sbjct 1136 AAGACACACTTGTGCAGAGAGCGGAACACATTCCAGCGGGCAAGCGGACCCCCATGTGTGCCCACTGCAACCAA 1209
Query 1276 GTCATCAGAGGACC-ATTCTTAGTGGCACTGGGGAAATCTTGGCACCCAGAAGAATTCAACTGCGCTCACTGCA 1348
||.|||||.||||| .||||| |||||.||||||||.||.|||||.|||||||||||.|||||.|||||.||||
Sbjct 1210 GTTATCAGGGGACCTTTTCTT-GTGGCTCTGGGGAAGTCCTGGCATCCAGAAGAATTTAACTGTGCTCATTGCA 1282
Query 1349 AAAATACAATGGCCTACATTGGATTTGTAGAGGAGAAAGGAGCCCTGTATTGTGAGCTGTGCTATGAGAAATTC 1422
||||.||||||||||||||.||.||||||||||||||.|||||.|||||.||||||||.|||||||||||.|||
Sbjct 1283 AAAACACAATGGCCTACATAGGCTTTGTAGAGGAGAAGGGAGCACTGTACTGTGAGCTATGCTATGAGAAGTTC 1356
Query 1423 TTTGCCCCTGAATGTGGTCGATGCCAAAGGAAGATCCTTGGAGAAGTCATCAATGCGTTGAAACAAACTTGGCA 1496
|||||.|||||||||||.||.|||||||||||||||||||||||||||||||||||.|||||.||.||.|||||
Sbjct 1357 TTTGCTCCTGAATGTGGCCGGTGCCAAAGGAAGATCCTTGGAGAAGTCATCAATGCTTTGAAGCAGACCTGGCA 1430
Query 1497 TGTTTCCTGTTTTGTGTGTGTAGCCTGTGGAAAGCCCATTCGGAACAATGTTTTTCACTTGGAGGATGGTGAAC 1570
|||.|||||||||||||||||.|||||||||||.||||||||.||.||||||||.||||||||.|||||.||.|
Sbjct 1431 TGTGTCCTGTTTTGTGTGTGTGGCCTGTGGAAAACCCATTCGTAATAATGTTTTCCACTTGGAAGATGGCGAGC 1504
Query 1571 CCTACTGTGAGACTGATTATTATGCCCTCTTTGGTACTATATGCCATGGATGTGAATTTCCCATAGAAGCTGGT 1644
|||||||||||||.||.||.||.|||||.|||||.||.|||||.|.||||||||||||.||||||||.||||||
Sbjct 1505 CCTACTGTGAGACAGACTACTACGCCCTTTTTGGAACAATATGTCGTGGATGTGAATTCCCCATAGAGGCTGGT 1578
Query 1645 GACATGTTCCTGGAAGCTCTGGGCTACACCTGGCATGACACTTGCTTTGTATGCTCAGTGTGTTGTGAAAGTTT 1718
|||||||||||||||||||||||.|||||.||||||||.|||||||||||.|||||.|||||||||||||||||
Sbjct 1579 GACATGTTCCTGGAAGCTCTGGGATACACTTGGCATGATACTTGCTTTGTGTGCTCTGTGTGTTGTGAAAGTTT 1652
Query 1719 GGAAGGTCAGACCTTTTTCTCCAAGAAGGACAAGCCCCTGTGTAAGAAACATGCTCATTCTGTGAATTTT 1788
||||||.|||||.|||||||||||||||||||||||.||.||.||.||||||||||||||||||||||||
Sbjct 1653 GGAAGGGCAGACATTTTTCTCCAAGAAGGACAAGCCACTTTGCAAAAAACATGCTCATTCTGTGAATTTT 1722
