Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_07831
• Subject: NM_001163433.1
• Aligned Length: 2154
• Identities: 1421
• Gaps: 591

Alignment

Query    1  ATGTTTCGCGACCAGGTCGGGGTGCTGGCGGGCTGGTTTAAGGGCTGGAACGAGTGCGAGCAGACTGTTGCGCT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GCTGTCGCTGCTCAAGCGCGTGAGCCAGACCCAGGCCCGCTTCCTCCAGCTCTGCCTGGAGCACTCGCTGGCCG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  ACTGCGCCGAGCTGCACGTCCTCGAACGCGAGGCCAACAGCCCCGGAATCATTAACCAATGGCAACAGGAATCC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AAGGATAAAGTGATTTCCCTCCTGTTAACTCATCTGCCTTTGTTGAAGCCAGGAAACCTCGACGCGAAAGTAGA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  ATATATGAAACTGCTGCCCAAAATCCTGGCTCACTCTATTGAACACAACCAGCACATTGAGGAGAGCAGGCAGC  370
                |||||||||||||||||.||||||||.||||||||.||||||||||||||||||||||||||||||||||
Sbjct    1  ----ATGAAACTGCTGCCCAAGATCCTGGCACACTCTATCGAACACAACCAGCACATTGAGGAGAGCAGGCAGC  70

Query  371  TGCTGTCCTATGCTTTGATACATCCAGCCACTTCGTTAGAAGACCGTAGTGCTTTAGCCATGTGGCTGAATCAC  444
            |||||||||||||||||||.||.|||||||||||.||.||||||||.||.||..||||||||||||||||||||
Sbjct   71  TGCTGTCCTATGCTTTGATCCACCCAGCCACTTCCTTGGAAGACCGCAGCGCACTAGCCATGTGGCTGAATCAC  144

Query  445  TTGGAGGACCGCACGTCGACCAGCTTTGGTGGCCAGAACCGAGGCCGCTCAGACTCTGTGGATTATGGACAGAC  518
            ||||||||||||||.||.||||||||||||.|||||||||||||||||||.|||||||||||||||||||||||
Sbjct  145  TTGGAGGACCGCACATCCACCAGCTTTGGTAGCCAGAACCGAGGCCGCTCGGACTCTGTGGATTATGGACAGAC  218

Query  519  ACACTACTATCACCAAAGACAGAACTCTGATGACAAGCTCAATGGGTGGCAGAACTCTCGGGATTCTGGGATTT  592
            .||.||||||||||||||||||||||||||.||.|||||||||||.||||||||||||||||||||||||||||
Sbjct  219  GCATTACTATCACCAAAGACAGAACTCTGACGATAAGCTCAATGGCTGGCAGAACTCTCGGGATTCTGGGATTT  292

Query  593  GCATCAATGCCTCCAACTGGCAGGACAAAAGCATGGGGTGTGAGAATGGCCATGTGCCCCTCTACTCCTCCTCA  666
            ||||||.|||||||||||||||||||||.|||.||||.|||||||||||||||||||||||||||||.|||||.
Sbjct  293  GCATCAGTGCCTCCAACTGGCAGGACAAGAGCCTGGGCTGTGAGAATGGCCATGTGCCCCTCTACTCTTCCTCG  366

Query  667  TCTGTCCCCACCACAATCAATACGATTGGAACCAGCACAAGTAC------------------------------  710
            ||||||||..||||||||||.||||||||||||.||.||||.||                              
Sbjct  367  TCTGTCCCTGCCACAATCAACACGATTGGAACCGGCGCAAGCACGATTCTCTCAGGCCAGGCACACCACAGCCC  440

Query  711  --------------------------------------------------------------------------  710
                                                                                      
Sbjct  441  TTTGAAACGATCTGTGTCCCTTACCCCACCCATGAATGTGCCAAACCAGCCTCTAGGACATGGATGGATGTCTC  514

Query  711  --------------------------------------------------------------------------  710
                                                                                      
Sbjct  515  ATGAGGACTTACGAGCTAGAGGACCTCAGTGCCTCCCATCCGATCATGCCCCCCTGTCTCCACAAAGCAGTGTA  588

Query  711  --------------------------------------------------------------------------  710
                                                                                      
Sbjct  589  GCCTCTTCAGGAAGTGGTGGGAGTGAACACTTAGAAGATCAGACCACTGCTCGTAACACATTCCAAGAAGAAGG  662

Query  711  ------------AAATGTTCCAGCCTGGCTGAAAAGCCTCCGCCTGCACAAATATGCCGCGCTTTTCTCCCAGA  772
                        |.||||||||||.|||.|.||||||||||||||||||||.||.||.|||||.|||||.||||
Sbjct  663  TAGTGGTATGAAAGATGTTCCAGCTTGGTTAAAAAGCCTCCGCCTGCACAAGTACGCTGCGCTCTTCTCGCAGA  736

Query  773  TGACCTATGAGGAGATGATGGCCCTCACCGAGTGCCAGCTGGAGGCGCAGAATGTTACCAAAGGTGCAAGACAC  846
            ||||.||||||||.||||||||||||||.|||||.||.||||||||.|||||||||||||||||.|||||||||
Sbjct  737  TGACTTATGAGGAAATGATGGCCCTCACTGAGTGTCAACTGGAGGCTCAGAATGTTACCAAAGGCGCAAGACAC  810

Query  847  AAAATTGTCATCAGTATTCAGAAGCTCAAAGAAAGACAAAATCTCCTGAAGTCTTTGGAAAGGGACATCATCGA  920
            ||||||||.|||||||||||||||||||||||||||||.||.||||||||||||||||||||||||||||||||
Sbjct  811  AAAATTGTAATCAGTATTCAGAAGCTCAAAGAAAGACAGAACCTCCTGAAGTCTTTGGAAAGGGACATCATCGA  884

Query  921  GGGGGGCAGCCTGCGCATCCCGCTCCAGGAACTGCACCAGATGATCCTGACTCCGATCAAGGCCTACAGCTCCC  994
            .||||||||||||||||.|||.||||||||.||.||.||||||||||||||.||.|||||||||||||||||.|
Sbjct  885  AGGGGGCAGCCTGCGCACCCCCCTCCAGGAGCTACATCAGATGATCCTGACACCCATCAAGGCCTACAGCTCTC  958

Query  995  CGAGCACCACCCCCGAGGCTCGCCGCCGGGAGCCCCAGGCCCCGCGTCAGCCCTCACTGATGGGCCCCGAGAGC  1068
            |.||.||||||||.||||..|||.||||||                  ||||||||||||||      ||||||
Sbjct  959  CCAGTACCACCCCTGAGGTGCGCTGCCGGG------------------AGCCCTCACTGATG------GAGAGC  1008

Query 1069  CAGAGCCCCGACTGCAAAGATGGGGCCGCAGC---CACTGGCGCCACGGCCACCCCCTCGGCCGGGGCCAGCGG  1139
            |..|||||.|||||||||||..|.||.|||||   |||..|||||||.||||...||||.|||||.||||||||
Sbjct 1009  CCAAGCCCTGACTGCAAAGACAGCGCTGCAGCAGTCACCAGCGCCACAGCCAGTGCCTCAGCCGGTGCCAGCGG  1082

Query 1140  GGGGCTCCAGCCGCACCAGCTGAGCAGCTGCGATGGGGAGCTGGCCGTCGCCCCCCTGCCAGAGGGGGACCTCC  1213
            .||.||.||.||.|.||||||||||||||||||.||.||||||||.||||||||.|||||.|||||||||||||
Sbjct 1083  TGGACTGCAACCACCCCAGCTGAGCAGCTGCGACGGAGAGCTGGCTGTCGCCCCTCTGCCGGAGGGGGACCTCC  1156

Query 1214  CCGGGCAGTTCACACGCGTCATGGGGAAAGTGTGCACACAGCTCTTGGTCTCCAGACCTGATGAGGAAAATATA  1287
            |.|||||||||||.||.|||||||||||||||||||||||||||||||||||||||||.|||||.|||||||||
Sbjct 1157  CGGGGCAGTTCACCCGAGTCATGGGGAAAGTGTGCACACAGCTCTTGGTCTCCAGACCCGATGAAGAAAATATA  1230

Query 1288  AGTTCCTATTTACAGCTCATAGACAAGTGTCTAATTCATGAGGCATTTACAGAGACACAGAAAAAAAGATTGTT  1361
            ||.||||||.||||||||.|||||||||||||..||||||||||||||||||||||||||||||||||||||||
Sbjct 1231  AGCTCCTATCTACAGCTCTTAGACAAGTGTCTTGTTCATGAGGCATTTACAGAGACACAGAAAAAAAGATTGTT  1304

Query 1362  GTCATGGAAACAGCAGGTGCAGAAGCTCTTTCGGTCTTTCCCTCGGAAAACCCTTCTAGACATATCAGGATATC  1435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305  GTCATGGAAACAGCAGGTGCAGAAGCTCTTTCGGTCTTTCCCTCGGAAAACCCTTCTAGACATATCAGGATATC  1378

Query 1436  GACAGCAAAGAAATCGAGGCTTTGGGCAATCCAACTCCCTCCCGACGGCTGGCTCTGTGGGCGGTGGCATGGGC  1509
            ||||||||||||||||.|||||||||||.||||||||||||||.||.||..|||||||||||.|.|||||||||
Sbjct 1379  GACAGCAAAGAAATCGTGGCTTTGGGCAGTCCAACTCCCTCCCAACAGCCAGCTCTGTGGGCAGCGGCATGGGC  1452

Query 1510  AGACGGAACCCGCGCCAGTACCAGATCCCCTCTCGGAACGTCCCTTCCGCCCGCCTGGGCCTCTTGGGCACCAG  1583
            |||||||||||.||.||||||||||||.|.||||||||.|||||||||||||||||.||.|||.||||||||||
Sbjct 1453  AGACGGAACCCACGACAGTACCAGATCGCATCTCGGAATGTCCCTTCCGCCCGCCTTGGTCTCCTGGGCACCAG  1526

Query 1584  TGGATTCGTCAGCTCCAACCAGCGCAACACCACAGCTACCCCCACCATCATGAAACAAGGAAGACAGAACCTGT  1657
            ||||||.||||||||||||||||||.|||||.|.||.|.|||||||||||||||||||||||||||||||||.|
Sbjct 1527  TGGATTTGTCAGCTCCAACCAGCGCCACACCGCTGCCAACCCCACCATCATGAAACAAGGAAGACAGAACCTCT  1600

Query 1658  GGTTTGCCAACCCCGGGGGCAGCAATAGCATGCCAAGCCGCACCCACAGCTCAGTCCAGAGGACCCGCTCGCTG  1731
            |||||||||||||.|||||||||||.||||||||.|||||||||||||||||.|||||||.|||||||||||||
Sbjct 1601  GGTTTGCCAACCCTGGGGGCAGCAACAGCATGCCCAGCCGCACCCACAGCTCCGTCCAGAAGACCCGCTCGCTG  1674

Query 1732  CCCGTGCACACTTCCCCACAGAACATGCTGATGTTCCAGCAGCCAGAATTCCAGCTTCCCGTGACCGAACCTGA  1805
            ||||||||.|||||||||||.||||||||||||||||||||.||||||||.||||||||.|||||.||||||||
Sbjct 1675  CCCGTGCATACTTCCCCACAAAACATGCTGATGTTCCAGCAACCAGAATTTCAGCTTCCTGTGACTGAACCTGA  1748

Query 1806  CATCAACAACAGGCTGGAGTCGTTGTGCCTCAGTATGACCGAACACGCCCTGGGAGACGGGGTTGACCGGACCT  1879
            |||||||||.|||||||||||.|||||||||||||||||.||.||.||||||||||||||||||||||||||||
Sbjct 1749  CATCAACAATAGGCTGGAGTCCTTGTGCCTCAGTATGACGGAGCATGCCCTGGGAGACGGGGTTGACCGGACCT  1822

Query 1880  CCACCATC  1887
            ||||.|||
Sbjct 1823  CCACAATC  1830