Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07836
- Subject:
- XM_011537610.3
- Aligned Length:
- 2296
- Identities:
- 1548
- Gaps:
- 704
Alignment
Query 1 ATGGGGC--TCCCAGCGCTCGAGTTCAGCGACTGCTGCCTCGATAGTCCGCACTTCCGAGAGACGCTCAAGTCG 72
||||.|| .|||.|| |||| |.|.| |||||||| |.|||
Sbjct 1 ATGGAGCGTGCCCTGC---CGAG----GGGGC-GCTGCCTC---------CCCTT------------------- 38
Query 73 CACGAAGCAGAGCTGGACAAGACCAACAAATTCATCAAGGAGCTCATCAAGGACGGGAAGTCACTCATAAGCGC 146
||||| |||
Sbjct 39 ------------------------------------------------------GGGAA---------AAG--- 46
Query 147 GCTCAAGAATTTGTCTTCAGCGAAGCGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGCATAGGAG 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 47 --------ATTTGTCTTCAGCGAAGCGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGCATAGGAG 112
Query 221 ATGCAGAAACAGATGATGAGATGTGTATAGCAAGGTCTTTGCAGGAGTTTGCCACTGTCCTCAGGAATCTTGAA 294
||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 113 ATGCAGAAACAGATGATGAGATGTGTATAGCAAGATCTTTGCAGGAGTTTGCCACTGTCCTCAGGAATCTTGAA 186
Query 295 GATGAACGGATACGGATGATTGAGAATGCCAGCGAGGTGCTCATCACTCCCTTGGAGAAGTTTCGAAAGGAACA 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GATGAACGGATACGGATGATTGAGAATGCCAGCGAGGTGCTCATCACTCCCTTGGAGAAGTTTCGAAAGGAACA 260
Query 369 GATCGGGGCTGCCAAGGAAGCCAAAAAGAAGTATGACAAAGAGACAGAAAAGTATTGTGGCATCTTAGAAAAAC 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GATCGGGGCTGCCAAGGAAGCCAAAAAGAAGTATGACAAAGAGACAGAAAAGTATTGTGGCATCTTAGAAAAAC 334
Query 443 ACTTGAATTTGTCTTCCAAAAAGAAAGAATCTCAGCTTCAGGAGGCAGACAGCCAAGTGGACCTGGTCCGGCAG 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 ACTTGAATTTGTCTTCCAAAAAGAAAGAATCTCAGCTTCAGGAGGCAGACAGCCAAGTGGACCTGGTCCGGCAG 408
Query 517 CATTTCTATGAAGTATCCCTGGAATATGTCTTCAAGGTGCAGGAAGTCCAAGAGAGAAAGATGTTTGAGTTTGT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CATTTCTATGAAGTATCCCTGGAATATGTCTTCAAGGTGCAGGAAGTCCAAGAGAGAAAGATGTTTGAGTTTGT 482
Query 591 GGAGCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTACGAACTGGCCAAGGATTTCG 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GGAGCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTACGAACTGGCCAAGGATTTCG 556
Query 665 GGGACTTCAAGACACAGTTAACCATTAGCATACAGAACACAAGAAATCGCTTTGAAGGCACTAGATCAGAAGTG 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GGGACTTCAAGACACAGTTAACCATTAGCATACAGAACACAAGAAATCGCTTTGAAGGCACTAGATCAGAAGTG 630
Query 739 GAATCACTGATGAAAAAGATGAAGGAGAATCCCCTTGAGCACAAGACCATCAGTCCCTACACCATGGAGGGATA 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GAATCACTGATGAAAAAGATGAAGGAGAATCCCCTTGAGCACAAGACCATCAGTCCCTACACCATGGAGGGATA 704
Query 813 CCTCTACGTGCAGGAGAAACGTCACTTTGGAACTTCTTGGGTGAAGCACTACTGTACATATCAACGGGATTCCA 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CCTCTACGTGCAGGAGAAACGTCACTTTGGAACTTCTTGGGTGAAGCACTACTGTACATATCAACGGGATTCCA 778
Query 887 AACAAATCACCATGGTACCATTTGACCAAAAGTCAGGAGGAAAAGGGGGAGAAGATGAATCAGTTATCCTCAAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AACAAATCACCATGGTACCATTTGACCAAAAGTCAGGAGGAAAAGGGGGAGAAGATGAATCAGTTATCCTCAAA 852
Query 961 TCCTGCACACGGCGGAAAACAGACTCCATTGAGAAGAGGTTTTGCTTTGATGTGGAAGCAGTAGACAGGCCAGG 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 TCCTGCACACGGCGGAAAACAGACTCCATTGAGAAGAGGTTTTGCTTTGATGTGGAAGCAGTAGACAGGCCAGG 926
Query 1035 GGTTATCACCATGCAAGCTTTGTCGGAAGAGGACCGGAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTG 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 GGTTATCACCATGCAAGCTTTGTCGGAAGAGGACCGGAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTG 1000
Query 1109 TCTACAACTCGAACAAAGACAGCCAGAGTGAAGGGACTGCGCAGTTGGACAGCATTGGCTTCAGCATAATCAGG 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TCTACAACTCGAACAAAGACAGCCAGAGTGAAGGGACTGCGCAGTTGGACAGCATTGGCTTCAGCATAATCAGG 1074
Query 1183 AAATGCATCCATGCTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGAATTGTGGGGGTCAACTCCAG 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 1075 AAATGCATCCATGCTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGAATTGTGGGTGTCAACTCCAG 1148
Query 1257 AGTGCAGAAGTTGCTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCTGAAT 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 AGTGCAGAAGTTGCTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCTGAAT 1222
Query 1331 GGGAGATAAAGACCATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTACCAG 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 GGGAGATAAAGACCATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTACCAG 1296
Query 1405 TTTCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGT 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 TTTCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGT 1370
Query 1479 TCATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAAATGTTGCTAACAACC 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TCATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAAA-------------- 1430
Query 1553 ACAAGCAGAATTTGATGACGGTGGCAAACCTTGGTGTGGTGTTTGGACCCACTCTGCTGAGGCCTCAGGAAGAA 1626
||.||.|| |||| ||.|||||
Sbjct 1431 ---------------------------------GTATGCTG-----------------GAGG-CTTAGGAA--- 1450
Query 1627 ACAGTAGCAGCCATCATGGACATCAAATTTCAGAACATTGTCATTG-AGATCCTAAT--AGAAAACCACGAAAA 1697
|| ||||.|..||| ||..|||||| || | ||||.|.||..|||
Sbjct 1451 --AG--------------------AAATGTGTGAA-ATGTTCATTGCAG-------TGGAGAACAGCAGCAAA- 1493
Query 1698 GATATTTAACACCGTGCCCGATATGCCTCTCACCA----ATGCCCAGCTGCACCTGTCTCGGAAGAAGAGCAGT 1767
||||.||| .|||| || ||| ||| ||.|| ||||.||
Sbjct 1494 --------------TGCCAGAT-GGCCT-TC-CCAGAGGATG---------------CTGGG--GAAGTGC--- 1530
Query 1768 GACTCCAAGCCCCCGTCCTGCAGCGAGAGGCCCCTGACGCTCTTCCACACCGTTCAGTCAA-CAGAG-AAACAG 1839
||.||||.| .|||||.| ||| ||||| ...|||
Sbjct 1531 ---------------TCATGCAAC--CAGGCCAC------------------------CAAGCAGAGTTTTCAG 1563
Query 1840 G--------AACAAAGGAACAGCATCATCAACTCCAGTTTGGAATCTGTCTCATCAAATCCAAACAGCATCCTT 1905
| |.|.|.|| |.|||||...||..|||||.|.||| ..||||
Sbjct 1564 GGGGATTTTACCTATGG-------TGATCAAGGGCAAATTGGAGTGTGT-------TGTCCA------------ 1611
Query 1906 AATTCCAGCAGCAGCTTACAGCCCAACATGAACTCCAGTGACCCAGACCTGGCTGTGGTCAAACCCACCCGGCC 1979
Sbjct 1612 -------------------------------------------------------------------------- 1611
Query 1980 CAACTCACTCCCCCCGAATCCAAGCCCAACTTCACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCATCCA 2053
Sbjct 1612 -------------------------------------------------------------------------- 1611
Query 2054 GCCCTATGCCCACCTCATCCACGTCCAGCGACTCATCCCCCGTCAGCACACCGTTCCGGAAGGCAAAAGCCTTG 2127
Sbjct 1612 -------------------------------------------------------------------------- 1611
Query 2128 TATGCCTGCAAAGCTGAACATGACTCAGAACTTTCGTTCACAGCAGGCACGGTCTTCGATAATGTTCACCCATC 2201
Sbjct 1612 -------------------------------------------------------------------------- 1611
Query 2202 TCAGGAGCCTGGCTGGTTGGAGGGGACTCTGAACGGAAAGACTGGCCTCATCCCTGAGAATTACGTGGAGTTCC 2275
Sbjct 1612 -------------------------------------------------------------------------- 1611
Query 2276 TC 2277
Sbjct 1612 -- 1611
