Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07882
- Subject:
- NR_102387.1
- Aligned Length:
- 3739
- Identities:
- 1807
- Gaps:
- 1687
Alignment
Query 1 ATGATAGCTGTCTCTTTTAAATGCCGTTGTCAAATTCTGAGGCGACTTACTAAAGATGAGAGTCCCTACACTAA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 ATCCGCCAGCCAGACAAAGCCGCCTGATGGAGCGTTGGCTGTGAGGAGACAGAGCATCCCAGAGGAATTCAAGG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 GCTCCACAGTCGTCGAGCTGATGAAGAAGGAAGGCACTACCCTGGGTCTGACGGTATCGGGAGGAATTGATAAG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 GATGGCAAGCCAAGAGTATCTAATCTGCGGCAAGGAGGAATTGCTGCTAGAAGTGACCAGCTGGATGTGGGTGA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 CTACATCAAAGCAGTGAATGGAATCAACCTGGCCAAATTCCGCCATGACGAGATCATCAGCTTGCTGAAGAATG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 TGGGAGAAAGAGTGGTTCTTGAAGTAGAGTACGAGCTTCCACCGGTCTCTGTGCAAGGATCAAGTGTTATTTTC 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 CGAACAGTGGAGGTCACATTACATAAAGAAGGCAATACCTTTGGTTTTGTAATTCGAGGGGGAGCACATGATGA 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 TAGAAATAAATCTCGTCCAGTTGTGATAACATGTGTTCGTCCTGGAGGGCCTGCTGACAGAGAGGGCACGATCA 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 AACCCGGTGACAGGTTGCTCAGTGTGGATGGAATTCGGCTTCTTGGAACTACGCATGCTGAAGCCATGAGTATT 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 CTTAAACAATGTGGACAAGAAGCAGCACTGCTGATAGAATATGATGTCTCAGTAATGGACTCTGTGGCAACAGC 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 ATCCGGGCCACTACTAGTCGAAGTTGCCAAAACTCCTGGTGCCAGCCTTGGGGTTGCCCTAACTACCTCGATGT 814
.||| ||||.|.|| |||| |
Sbjct 1 -------------------------ACCA------------CCAGACCTG-------------TACC------T 18
Query 815 GCTGTAACAAACAAGTCATTGTCATAGACAAAATCAAATCTGC------AAGTATTGCAGACAGATGTGGCGCA 882
.||..|.|||.||||.|..||.| .||||| ||.|||| ||
Sbjct 19 TCTTCAGCAACCAAGGCTATGGC--------------TTCTGCCAGTGTAACTATT----------------CA 62
Query 883 TTGCATGTGGGAG--ATCACATCCTCTCCATCGATGGAACCAGCAT--GGAGTACTGTACAC----TTGCAGAA 948
.|||||.| || .|.||.||||||.|| ||...|.||| || |||| || ||||| ||
Sbjct 63 CTGCATCT---AGCCCTTACCTCCTCTGCA--GACAAAGCCA--ATGGGGAG-AC--TACACCTGTTT------ 120
Query 949 GCAACCCAGTT--CCTGGCCAACACCACTGACCAGGTCAAGCTTGAGATCCTTCCCCATCATCAGACCCGGCTG 1020
|||||| ||| |||..|..|| ||| ||.||.|||.|
Sbjct 121 -----CCAGTTAACCT-----ACATTATAGA-------AAG---------------CAGCAGCAGTC------- 155
Query 1021 GCCCTAAAGGGG----CCCGACCATG-CAGCTTTGGTGTCTT-------CATCCTTCTCTCCTACCTCCATGAG 1082
|||.| |||.|..||| | |||| ||.|||| |||||.|..||.||| |||
Sbjct 156 -------AGGAGGCATCCCCAGAATGTC--CTTT-GTTTCTTTGGTCACCATCCCTTGCTTCTA-------GAG 212
Query 1083 TGCAT-ACAGC----CTGAGTTCCCTGAA--CATGGGGACTCTACCTCGAAG----CCTCTA--CTCCACCAGC 1143
...|| ||||| | ||| ||||| .|.||.|| .|||| ||..|| .|.||||..|
Sbjct 213 AAGATGACAGCAAAAC-GAG----CTGAAAGGAAGGAGA--------TGAAGAGACCCAATAGTTTTCACCTTC 273
Query 1144 C--CACGTGGAACCATGATGAGGAGGAGACT----GAAAAAGA---AAGACTTCAAA----AGCTCAT-TGTCC 1203
| ..||| |||| || |||||.|| |||| ||| ||||||| ||||.
Sbjct 274 CTTTTCGT----CCAT-------------CTTTAAGAAAAGGACAGAAGA----AAAACGCAGCTCATGTGTCT 326
Query 1204 TTAGCCTCCAGCACAGTAGGATTGGCTGGGCAGGTTGTTCACACAGAAACCACAGAGGTTGTGCTGACGGCAGA 1277
||||||||||||||.||.||.||||||||.|||||.||||||||.||||||||||||||||||||||||||.||
Sbjct 327 TTAGCCTCCAGCACTGTGGGGTTGGCTGGCCAGGTCGTTCACACTGAAACCACAGAGGTTGTGCTGACGGCTGA 400
Query 1278 TCCTGTCACAGGATTTGGGATCCAACTGCAGGGCAGTGTGTTTGCCACAGAAACTCTCTCTTCTCCACCTCTGA 1351
.||||||||.||.||.||.|||||||||||||||||.||||||||||||||.||.|||||.|||||.|||||||
Sbjct 401 CCCTGTCACGGGCTTCGGAATCCAACTGCAGGGCAGCGTGTTTGCCACAGAGACGCTCTCCTCTCCGCCTCTGA 474
Query 1352 TTTCCTATATCGAAGCTGACAGCCCAGCAGAGAGATGTGGGGTGCTACAGATTGGAGACAGAGTGATGGCCATC 1425
||||||||||.|||||||||||||||||||||||||||||.|||||||||||||||||||||||.||||||||.
Sbjct 475 TTTCCTATATTGAAGCTGACAGCCCAGCAGAGAGATGTGGTGTGCTACAGATTGGAGACAGAGTCATGGCCATT 548
Query 1426 AATGGAATTCCAACAGAAGACAGCACCTTCGAAGAAGCCAGTCAGCTCCTCCGAGACTCTTCAATCACGAGCAA 1499
||||||||.|||||||||||||||||||||||.|||||||.|||.|||||..||||||||||.|||||||||||
Sbjct 549 AATGGAATCCCAACAGAAGACAGCACCTTCGAGGAAGCCAATCAACTCCTGAGAGACTCTTCCATCACGAGCAA 622
Query 1500 GGTCACACTGGAAATCGAGTTTGATGTTGCAGAGTCTGTCATCCCAAGTAGTGGAACATTTCATGTAAAGCTGC 1573
.||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 623 AGTCACACTAGAAATCGAGTTTGATGTTGCAGAGTCTGTCATCCCAAGTAGTGGAACATTTCATGTAAAACTGC 696
Query 1574 CTAAGAAGCACAATGTGGAACTTGGAATAACCATAAGTTCACCATCCAGTAGAAAACCAGGAGACCCCCTCGTC 1647
|.||||||||||..||||||||||||||||||||.|||||.|||||||||||||||||.||.||||||||.|||
Sbjct 697 CCAAGAAGCACAGCGTGGAACTTGGAATAACCATCAGTTCGCCATCCAGTAGAAAACCGGGGGACCCCCTTGTC 770
Query 1648 ATTTCAGATATCAAGAAAGGGAGTGTGGCACACAGAACTGGGACCCTGGAACTTGGGGATAAATTGCTCGCAAT 1721
||||||||||||||||||||.|||||||||||||||||.||.||.||||||||.||.||.|||.||||.||.||
Sbjct 771 ATTTCAGATATCAAGAAAGGCAGTGTGGCACACAGAACCGGAACTCTGGAACTGGGAGACAAACTGCTTGCGAT 844
Query 1722 AGATAATATCCGGCTGGACAACTGTTCCATGGAAGATGCAGTTCAGATCCTCCAGCAATGTGAAGACCTGGTGA 1795
||||||.|||||||||||.||||||||||||||||||||.||.||||||||||||||.||||||||||||||||
Sbjct 845 AGATAACATCCGGCTGGATAACTGTTCCATGGAAGATGCGGTCCAGATCCTCCAGCAGTGTGAAGACCTGGTGA 918
Query 1796 AGCTCAAAATCCGCAAAGATGAAGATAATTCAGATGAGCAAGAAAGTTCCGGAGCAATTATTTACACCGTGGAG 1869
||||||||||||||||||||||||||||.|||||.||||||||.|||||||||||.|||||||||||.||||||
Sbjct 919 AGCTCAAAATCCGCAAAGATGAAGATAACTCAGACGAGCAAGAGAGTTCCGGAGCGATTATTTACACGGTGGAG 992
Query 1870 CTTAAACGCTACGGGGGGCCCCTTGGCATCACAATTTCAGGAACTGAAGAGCCGTTTGATCCTATAATCATTTC 1943
||.||.|||||.||||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||.||
Sbjct 993 CTGAAGCGCTATGGGGGGCCCCTTGGCATCACAATTTCTGGAACTGAAGAGCCGTTTGATCCTATTATCATCTC 1066
Query 1944 AAGCCTCACTAAAGGGGGATTAGCTGAAAGAACTGGCGCAATCCACATAGGAGACCGAATCCTAGCCATCAATA 2017
.|||||||||||||||||||||||||||||.|||||.||.||||||||.|||||..||||||||||||||||||
Sbjct 1067 GAGCCTCACTAAAGGGGGATTAGCTGAAAGGACTGGAGCGATCCACATCGGAGATAGAATCCTAGCCATCAATA 1140
Query 2018 GCAGCAGCTTGAAAGGGAAGCCTCTGAGTGAAGCCATCCATTTGTTACAGATGGCAGGAGAGACTGTCACCTTG 2091
|||||||||||||.||||||||||||||||||||||||||.|||.|.||||||||||||||||||||||||.||
Sbjct 1141 GCAGCAGCTTGAAGGGGAAGCCTCTGAGTGAAGCCATCCACTTGCTCCAGATGGCAGGAGAGACTGTCACCCTG 1214
Query 2092 AAAATTAAGAAACAGACAGATGCCCAGTCAGCATCGAGCCCCAAGAAGTTCCCTATTTCTAGCCATTTGAGTGA 2165
||||||||||||||||||||||
Sbjct 1215 AAAATTAAGAAACAGACAGATG---------------------------------------------------- 1236
Query 2166 CCTGGGGGATGTGGAGGAGGACTCCTCACCAGCACAGAAGCCAGGCAAGCTCTCCGACATGTACCCCTCCACGG 2239
||||
Sbjct 1237 ------------------------------------------------GCTC---------------------- 1240
Query 2240 TGCCCAGTGTGGACAGTGCTGTGGATTCATGGGATGGGTCTGCAATAGACACCAGCTATGGAACTGAAGGCACT 2313
|||
Sbjct 1241 -------------------------------------------------------------AAC---------- 1243
Query 2314 AGTTTTCAGGCCTCAGGATACAATTTCAACACCTATGACTGGAGGAGTCCAAAACAGAGAGGCAGCTTGTCCCC 2387
|||||||.|.|||||||||||||.||||||||||||.||||||||||||||.||.|||..||||.|||||||
Sbjct 1244 --TTTTCAGACTTCAGGATACAATTACAACACCTATGATTGGAGGAGTCCAAAGCAAAGAACCAGCCTGTCCCC 1315
Query 2388 AGTCACTAAGCCTCGAAGCCAGACTTACCCAGATGTGGGGCTGAGTTATGAAGACTGGGACCGGTCCACAGCCA 2461
||||.|.|||||||||||||||||.||||||||||||||.||||||.|||||||||||||.||.||||||||||
Sbjct 1316 AGTCCCCAAGCCTCGAAGCCAGACGTACCCAGATGTGGGCCTGAGTAATGAAGACTGGGATCGATCCACAGCCA 1389
Query 2462 GTGGTTTTGCAGGGGCTGCCGATAGTGCAGAGACAGAACAAGAGGAGAACTTCTGGTCTCAAGCGCTGGAGGAT 2535
||||.||||.|||||||.|.||.||||||||..|.|||||||||||.|||||||||||||||||..|||||||.
Sbjct 1390 GTGGCTTTGTAGGGGCTTCTGACAGTGCAGATGCTGAACAAGAGGAAAACTTCTGGTCTCAAGCATTGGAGGAC 1463
Query 2536 TTGGAAACCTGCGGACAGTCAGGAATTCTGAGAGAACTGGAGGAGAAAGCTGACAGGCGTGTGTCTTTGAGAAA 2609
.||||.||||||||.|||||.||.||.||||||||.||.||
Sbjct 1464 CTGGAGACCTGCGGCCAGTCGGGGATCCTGAGAGAGCTTGA--------------------------------- 1504
Query 2610 CATGACTCTCTTGGCAACAATCATGTCGGGGAGCACGATGAGTTTGAATCATGAGGCTCCAACACCTCGCAGTC 2683
|||||||||||||||||||||.||.|||||||||||||||||||||||||...|||||||||
Sbjct 1505 ------------GGCAACAATCATGTCGGGGAGTACTATGAGTTTGAATCATGAGGCTCCAATGGCTCGCAGTC 1566
Query 2684 AGCTGGGGCGACAGGCCAGCTTCCAGGAGCGCAGCAGCTCGCGGCCGCACTACAGCCAAACAACTCGGAGCAAC 2757
||||||||||||||||||||||||||||.||.|||||.||.|||||.|||||.||||||||||||||.||||||
Sbjct 1567 AGCTGGGGCGACAGGCCAGCTTCCAGGAACGGAGCAGTTCACGGCCACACTATAGCCAAACAACTCGCAGCAAC 1640
Query 2758 ACCCTGCCTTCAGATGTGGGTAGGAAGTCAGTAACCCTGAGAAAAATGAAACAAGAAATAAAGGAGATCATGTC 2831
||||||||.|||||.|||||.||.|||||.|||||||||.|.||||||||.|||||||||||||||||||||||
Sbjct 1641 ACCCTGCCCTCAGACGTGGGCAGAAAGTCTGTAACCCTGCGGAAAATGAAGCAAGAAATAAAGGAGATCATGTC 1714
Query 2832 TCCAACTCCTGTGGAGCTGCACAAGGTGACCTTGTACAAGGACTCTGACATGGAGGACTTTGGGTTCAGTGTAG 2905
.||||||||.||||||||.||||||||||||||.|||||||||||||.||||||||||||.|||||||||||.|
Sbjct 1715 CCCAACTCCGGTGGAGCTACACAAGGTGACCTTATACAAGGACTCTGGCATGGAGGACTTCGGGTTCAGTGTGG 1788
Query 2906 CAGATGGCTTACTGGAGAAAGGAGTGTATGTCAAAAATATTCGCCCAGCTGGGCCAGGAGATCTTGGTGGCTTA 2979
||||||||.|.|||||||||||.|||||||||||||||||.|||||||||||||||||.|||.||||.|||||.
Sbjct 1789 CAGATGGCCTGCTGGAGAAAGGCGTGTATGTCAAAAATATCCGCCCAGCTGGGCCAGGTGATGTTGGGGGCTTG 1862
Query 2980 AAGCCCTATGACAGGCTCTTACAGGTGAATCATGTCCGAACCAGAGACTTTGACTGCTGCCTTGTTGTGCCCCT 3053
||||||||.|||||||||||||||||.|||||.||.||.||.||||||||||||||||||||.||.|||||.||
Sbjct 1863 AAGCCCTACGACAGGCTCTTACAGGTAAATCACGTGCGGACGAGAGACTTTGACTGCTGCCTGGTGGTGCCTCT 1936
Query 3054 CATAGCAGAATCCGGGAATAAGCTGGACCTGGTTATTAGTAGAAACCCACTGGCTTCACAGAAGTCTATAGACC 3127
||||||.|||||.||.||.||||||||||||||||||||.|||||.||||||||.||.||||||||.|||||.|
Sbjct 1937 CATAGCTGAATCTGGCAACAAGCTGGACCTGGTTATTAGCAGAAATCCACTGGCCTCCCAGAAGTCGATAGAAC 2010
Query 3128 AACAGAGTCTACCAGGAGATTGGAGTGAACAGAACAGTGCTTTTTTCCAGCAGCCTAGCCACGGTGGT-----A 3196
|.|.|..|||.||..|.||.|||||.|||||||||||.|||||.||||||||.||.||||||||||.| |
Sbjct 2011 AGCCGGCTCTGCCCAGCGACTGGAGCGAACAGAACAGCGCTTTCTTCCAGCAACCCAGCCACGGTGCTTCCCAA 2084
Query 3197 ATTTGG-AGACACGAG---------------AACCCACT---AATACATTA----------------------- 3228
| || ||||| |.| ||.||||| .|.|.||.|
Sbjct 2085 A---GGAAGACA-GCGCCTCGGCCAACCTGAAAACCACTCTGGAGAAATGAGAATGAGCTGCGGCATCAGATCT 2154
Query 3229 -------------------------------------------------------------------------- 3228
Sbjct 2155 GGGTTCGGCTGGAAGCTCCAGTACTCAGAATGTGGCGCAATTTCCCTCCGGGAAGCCAGCTTCCCCACCTGGGA 2228
Query 3229 -------------------------------------------------------------------------- 3228
Sbjct 2229 TCCTGAAGGGATTCCTGGAGATACTGTATACTTTTGGCAAAGCCTCTGAGAAAGAGCATCATCCCCTCCCATGA 2302
Query 3229 -------------------------------------------------------------------------- 3228
Sbjct 2303 ACAAACTCTGGGCTGATGTCACCGCGTGAGGATGAGAGGCAGCAGGCACATCGCAGTGCCCAATCTCACGCTTA 2376
Query 3229 -------------------------------------------------------------------------- 3228
Sbjct 2377 CGTTCACAGATCTGCAACGCAGGCCTTTGGTCCAAGCGGGAAGGCTCCAGCAGACTCGGGCCTGGGGCTGAGGA 2450
Query 3229 -------------------------------------------------------------------------- 3228
Sbjct 2451 ACACTGCCTTTTTCTCTTTGTGCCACCATGTAAAGTCATAGCCCCCCCCCCACCCCCCCAATGTCGGTGAGAAG 2524
Query 3229 --------------------------------------- 3228
Sbjct 2525 AAATATAACTCAAGAAACTTGAAAAAAAAAAAAAAAAAA 2563
