Construct: ORF ccsbBroadEn_07882

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012101.1_s300c1, BRDN0000395079
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GRIP1 (23426)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23426 GRIP1 glutamate receptor interact... NM_021150.4 99.9% 99.9% 2305C>G
2 human 23426 GRIP1 glutamate receptor interact... NM_001178074.2 98.5% 98.5% 2305C>G;2576_2577ins45
3 human 23426 GRIP1 glutamate receptor interact... NM_001366724.1 96.3% 94.9% (many diffs)
4 human 23426 GRIP1 glutamate receptor interact... NM_001366723.1 96.2% 94.8% (many diffs)
5 human 23426 GRIP1 glutamate receptor interact... NM_001366722.1 95.3% 95.2% 1043_1198del;2461C>G
6 human 23426 GRIP1 glutamate receptor interact... XM_005268754.4 93.6% 93.2% (many diffs)
7 human 23426 GRIP1 glutamate receptor interact... XM_005268757.4 92.5% 90.5% (many diffs)
8 human 23426 GRIP1 glutamate receptor interact... XM_017019099.1 92% 90.6% (many diffs)
9 human 23426 GRIP1 glutamate receptor interact... XM_017019100.1 91.5% 90.2% (many diffs)
10 human 23426 GRIP1 glutamate receptor interact... XM_017019098.1 87.5% 86.2% (many diffs)
11 mouse 74053 Grip1 glutamate receptor interact... NM_001277294.1 87.9% 94.9% (many diffs)
12 mouse 74053 Grip1 glutamate receptor interact... XM_017314126.1 87.5% 94.3% (many diffs)
13 mouse 74053 Grip1 glutamate receptor interact... NM_001277292.1 86.1% 92.9% (many diffs)
14 mouse 74053 Grip1 glutamate receptor interact... NM_130891.2 85.5% 92.4% (many diffs)
15 mouse 74053 Grip1 glutamate receptor interact... NM_133442.2 85.2% 90.1% (many diffs)
16 mouse 74053 Grip1 glutamate receptor interact... NM_028736.2 85.1% 91.8% (many diffs)
17 mouse 74053 Grip1 glutamate receptor interact... XM_006514237.2 84.7% 91.5% (many diffs)
18 mouse 74053 Grip1 glutamate receptor interact... XM_006514236.2 84% 90.2% (many diffs)
19 mouse 74053 Grip1 glutamate receptor interact... XM_006514238.2 82.8% 88.6% (many diffs)
20 mouse 74053 Grip1 glutamate receptor interact... XM_006514242.3 81.8% 86% (many diffs)
21 mouse 74053 Grip1 glutamate receptor interact... XM_006514235.2 81.5% 86.1% (many diffs)
22 mouse 74053 Grip1 glutamate receptor interact... NM_001277293.1 81.4% 87.2% (many diffs)
23 mouse 74053 Grip1 glutamate receptor interact... XM_006514239.2 81.3% 86.4% (many diffs)
24 mouse 74053 Grip1 glutamate receptor interact... XM_006514231.2 80.3% 86.2% (many diffs)
25 mouse 74053 Grip1 glutamate receptor interact... XM_006514232.2 80.3% 86.1% (many diffs)
26 mouse 74053 Grip1 glutamate receptor interact... XM_006514233.2 79.1% 84.9% (many diffs)
27 mouse 74053 Grip1 glutamate receptor interact... XM_006514234.2 78.2% 83.9% (many diffs)
28 mouse 74053 Grip1 glutamate receptor interact... XR_380451.2 60.2% (many diffs)
29 mouse 74053 Grip1 glutamate receptor interact... XR_380450.2 60.2% (many diffs)
30 mouse 74053 Grip1 glutamate receptor interact... NM_001277295.1 51.3% 52.7% (many diffs)
31 mouse 74053 Grip1 glutamate receptor interact... NR_102387.1 48.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3297
ORF length:
3228
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GATAGCTGTC TCTTTTAAAT GCCGTTGTCA AATTCTGAGG CGACTTACTA
121AAGATGAGAG TCCCTACACT AAATCCGCCA GCCAGACAAA GCCGCCTGAT GGAGCGTTGG
181CTGTGAGGAG ACAGAGCATC CCAGAGGAAT TCAAGGGCTC CACAGTCGTC GAGCTGATGA
241AGAAGGAAGG CACTACCCTG GGTCTGACGG TATCGGGAGG AATTGATAAG GATGGCAAGC
301CAAGAGTATC TAATCTGCGG CAAGGAGGAA TTGCTGCTAG AAGTGACCAG CTGGATGTGG
361GTGACTACAT CAAAGCAGTG AATGGAATCA ACCTGGCCAA ATTCCGCCAT GACGAGATCA
421TCAGCTTGCT GAAGAATGTG GGAGAAAGAG TGGTTCTTGA AGTAGAGTAC GAGCTTCCAC
481CGGTCTCTGT GCAAGGATCA AGTGTTATTT TCCGAACAGT GGAGGTCACA TTACATAAAG
541AAGGCAATAC CTTTGGTTTT GTAATTCGAG GGGGAGCACA TGATGATAGA AATAAATCTC
601GTCCAGTTGT GATAACATGT GTTCGTCCTG GAGGGCCTGC TGACAGAGAG GGCACGATCA
661AACCCGGTGA CAGGTTGCTC AGTGTGGATG GAATTCGGCT TCTTGGAACT ACGCATGCTG
721AAGCCATGAG TATTCTTAAA CAATGTGGAC AAGAAGCAGC ACTGCTGATA GAATATGATG
781TCTCAGTAAT GGACTCTGTG GCAACAGCAT CCGGGCCACT ACTAGTCGAA GTTGCCAAAA
841CTCCTGGTGC CAGCCTTGGG GTTGCCCTAA CTACCTCGAT GTGCTGTAAC AAACAAGTCA
901TTGTCATAGA CAAAATCAAA TCTGCAAGTA TTGCAGACAG ATGTGGCGCA TTGCATGTGG
961GAGATCACAT CCTCTCCATC GATGGAACCA GCATGGAGTA CTGTACACTT GCAGAAGCAA
1021CCCAGTTCCT GGCCAACACC ACTGACCAGG TCAAGCTTGA GATCCTTCCC CATCATCAGA
1081CCCGGCTGGC CCTAAAGGGG CCCGACCATG CAGCTTTGGT GTCTTCATCC TTCTCTCCTA
1141CCTCCATGAG TGCATACAGC CTGAGTTCCC TGAACATGGG GACTCTACCT CGAAGCCTCT
1201ACTCCACCAG CCCACGTGGA ACCATGATGA GGAGGAGACT GAAAAAGAAA GACTTCAAAA
1261GCTCATTGTC CTTAGCCTCC AGCACAGTAG GATTGGCTGG GCAGGTTGTT CACACAGAAA
1321CCACAGAGGT TGTGCTGACG GCAGATCCTG TCACAGGATT TGGGATCCAA CTGCAGGGCA
1381GTGTGTTTGC CACAGAAACT CTCTCTTCTC CACCTCTGAT TTCCTATATC GAAGCTGACA
1441GCCCAGCAGA GAGATGTGGG GTGCTACAGA TTGGAGACAG AGTGATGGCC ATCAATGGAA
1501TTCCAACAGA AGACAGCACC TTCGAAGAAG CCAGTCAGCT CCTCCGAGAC TCTTCAATCA
1561CGAGCAAGGT CACACTGGAA ATCGAGTTTG ATGTTGCAGA GTCTGTCATC CCAAGTAGTG
1621GAACATTTCA TGTAAAGCTG CCTAAGAAGC ACAATGTGGA ACTTGGAATA ACCATAAGTT
1681CACCATCCAG TAGAAAACCA GGAGACCCCC TCGTCATTTC AGATATCAAG AAAGGGAGTG
1741TGGCACACAG AACTGGGACC CTGGAACTTG GGGATAAATT GCTCGCAATA GATAATATCC
1801GGCTGGACAA CTGTTCCATG GAAGATGCAG TTCAGATCCT CCAGCAATGT GAAGACCTGG
1861TGAAGCTCAA AATCCGCAAA GATGAAGATA ATTCAGATGA GCAAGAAAGT TCCGGAGCAA
1921TTATTTACAC CGTGGAGCTT AAACGCTACG GGGGGCCCCT TGGCATCACA ATTTCAGGAA
1981CTGAAGAGCC GTTTGATCCT ATAATCATTT CAAGCCTCAC TAAAGGGGGA TTAGCTGAAA
2041GAACTGGCGC AATCCACATA GGAGACCGAA TCCTAGCCAT CAATAGCAGC AGCTTGAAAG
2101GGAAGCCTCT GAGTGAAGCC ATCCATTTGT TACAGATGGC AGGAGAGACT GTCACCTTGA
2161AAATTAAGAA ACAGACAGAT GCCCAGTCAG CATCGAGCCC CAAGAAGTTC CCTATTTCTA
2221GCCATTTGAG TGACCTGGGG GATGTGGAGG AGGACTCCTC ACCAGCACAG AAGCCAGGCA
2281AGCTCTCCGA CATGTACCCC TCCACGGTGC CCAGTGTGGA CAGTGCTGTG GATTCATGGG
2341ATGGGTCTGC AATAGACACC AGCTATGGAA CTGAAGGCAC TAGTTTTCAG GCCTCAGGAT
2401ACAATTTCAA CACCTATGAC TGGAGGAGTC CAAAACAGAG AGGCAGCTTG TCCCCAGTCA
2461CTAAGCCTCG AAGCCAGACT TACCCAGATG TGGGGCTGAG TTATGAAGAC TGGGACCGGT
2521CCACAGCCAG TGGTTTTGCA GGGGCTGCCG ATAGTGCAGA GACAGAACAA GAGGAGAACT
2581TCTGGTCTCA AGCGCTGGAG GATTTGGAAA CCTGCGGACA GTCAGGAATT CTGAGAGAAC
2641TGGAGGAGAA AGCTGACAGG CGTGTGTCTT TGAGAAACAT GACTCTCTTG GCAACAATCA
2701TGTCGGGGAG CACGATGAGT TTGAATCATG AGGCTCCAAC ACCTCGCAGT CAGCTGGGGC
2761GACAGGCCAG CTTCCAGGAG CGCAGCAGCT CGCGGCCGCA CTACAGCCAA ACAACTCGGA
2821GCAACACCCT GCCTTCAGAT GTGGGTAGGA AGTCAGTAAC CCTGAGAAAA ATGAAACAAG
2881AAATAAAGGA GATCATGTCT CCAACTCCTG TGGAGCTGCA CAAGGTGACC TTGTACAAGG
2941ACTCTGACAT GGAGGACTTT GGGTTCAGTG TAGCAGATGG CTTACTGGAG AAAGGAGTGT
3001ATGTCAAAAA TATTCGCCCA GCTGGGCCAG GAGATCTTGG TGGCTTAAAG CCCTATGACA
3061GGCTCTTACA GGTGAATCAT GTCCGAACCA GAGACTTTGA CTGCTGCCTT GTTGTGCCCC
3121TCATAGCAGA ATCCGGGAAT AAGCTGGACC TGGTTATTAG TAGAAACCCA CTGGCTTCAC
3181AGAAGTCTAT AGACCAACAG AGTCTACCAG GAGATTGGAG TGAACAGAAC AGTGCTTTTT
3241TCCAGCAGCC TAGCCACGGT GGTAATTTGG AGACACGAGA ACCCACTAAT ACATTATTGC
3301CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
3361aac

Download FASTA (ORF) (Full)