Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07995
- Subject:
- XR_001738696.1
- Aligned Length:
- 4033
- Identities:
- 1724
- Gaps:
- 2306
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCCGCGCAGGCGCTGTGGTGGGCTCCGGTGCACTGTGGGATGGAAACCGGAGCGGCGCGTCCTGGCAGGACCGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCGGCGGCGGCGGCGGGGCCGGCGGCGGCCAGGGACCCGGGCTTAGGCTCGGCCAGGCCGGCTGAGGGGCGCGG 148
Query 1 --------------------------ATGAACGCGGCGGTGGTGAGGCGGACGCAGGAGGCGCTGGGGAAAGTG 48
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCGGCCAGCGGGCGGCGGACGCCGTCATGAACGCGGCGGTGGTGAGGCGGACGCAGGAGGCGCTGGGGAAAGTG 222
Query 49 ATTCGGAGGCCGCCGCTGACAGAGAAGCTGCTGAGCAAGCCCCCGTTCCGCTACCTGCACGACATCATCACGGA 122
||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ATTCGGAGGCCGCCGCTGACCGAGAAGCTGCTGAGCAAGCCCCCGTTCCGCTACCTGCACGACATCATCACGGA 296
Query 123 GGTGATTAGAATGACTGGTTTCATGAAGGGCCTCTACACAGACGCCGAGATGAAGTCTGATAATGTGAAGGATA 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGTGATTAGAATGACTGGTTTCATGAAGGGCCTCTACACAGACGCCGAGATGAAGTCTGATAATGTGAAGGATA 370
Query 197 AAGATGCAAAAATTAGCTTCCTACAAAAGGCCATAGACGTGGTTGTAATGGTGTCGGGAGAGCCACTGTTGGCC 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AAGATGCAAAAATTAGCTTCCTACAAAAGGCCATAGACGTGGTTGTAATGGTGTCGGGAGAGCCACTGTTGGCC 444
Query 271 AAACCAGCCCGAATCGTGGCGGGGCATGAGCCTGAAAGAACAAACGAGCTGCTCCAGATAATTGGAAAATGCTG 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAACCAGCCCGAATCGTGGCGGGGCATGAGCCTGAAAGAACAAACGAGCTGCTCCAGATAATTGGAAAATGCTG 518
Query 345 TCTCAACAAGCTCTCTAGTGACGATGCGGTGCGGAGGGTTTTAGCTGGAGAGAAGGGAGAAGTGAAAGGCCGGG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCTCAACAAGCTCTCTAGTGACGATGCGGTGCGGAGGGTTTTAGCTGGAGAGAAGGGAGAAGTGAAAGGCCGGG 592
Query 419 CCTCACTGACCTCAAGATCTCAGGAATTGGATAATAAGAATGTGCGAGAAGAAGAGTCCAGAGTTCACAAAAAT 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCTCACTGACCTCAAGATCTCAGGAATTGGATAATAAGAATGTGCGAGAAGAAGAGTCCAGAGTTCACAAAAAT 666
Query 493 ACAGAGGATAGAGGAGACGCTGAAATAAAAGAGAGAAGTACAAGCAGAGATCGAAAACAGAAGGAAGAATTGAA 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACAGAGGATAGAGGAGACGCTGAAATAAAAGAGAGAAGTACAAGCAGAGATCGAAAACAGAAGGAAGAATTGAA 740
Query 567 AGAAGACCGCAAGCCAAGAGAAAAGGACAAGGACAAGGAGAAGGCCAAGGAGAATGGCGGAAACAGACACAGAG 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGAAGACCGCAAGCCAAGAGAAAAGGACAAGGACAAGGAGAAGGCCAAGGAGAATGGCGGAAACAGACACAGAG 814
Query 641 AAGGGGAGAGAGAGAGAGCCAAAGCCCGGGCCAGGCCAGACAGCGAGCGACAGAAAGACAGAGGCAACAGGGAG 714
||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 815 AAGGGGAGAGAGAGAGAGCCAAAGCCCGGGCCAGGCCAGACAACGAGCGACAGAAAGACAGAGGCAACAGGGAG 888
Query 715 CGGGACAGAGACTCCGAGCGCAAGAAGGAGACAGAGAGAAAGAGTGAGGGGGGGAAAGAGAAGGAGAGACTGAG 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CGGGACAGAGACTCCGAGCGCAAGAAGGAGACAGAGAGAAAGAGTGAGGGGGGGAAAGAGAAGGAGAGACTGAG 962
Query 789 AGACAGGGACCGAGAGCGCGACCGGGACAAAGGGAAGGACAGGGACAGACGGAGAGTGAAAAACGGGGAGCACT 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGACAGGGACCGAGAGCGCGACCGGGACAAAGGGAAGGACAGGGACAGACGGAGAGTGAAAAACGGGGAGCACT 1036
Query 863 CCTGGGACCTGGACAGGGAGAAGAACAGAGAGCATGACAAACCCGAGAAAAAGTCAGCAAGCTCAGGGGAGATG 936
|||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 1037 CCTGGGACCTGGACAGGGAGAAGAACAGAGAGCATGACAAACCTGAGAAA------------------------ 1086
Query 937 TCTAAAAAGTTATCAGATGGAACTTTTAAAGACTCCAAGGCTGAAACAGAGACTGAGATTTCCACTAGAGCTTC 1010
Sbjct 1087 -------------------------------------------------------------------------- 1086
Query 1011 CAAGTCATTGACAACAAAAACATCAAAACGGCGATCCAAAAATTCAGTGGAAGGTGACTCCACCAGTGATGCAG 1084
||||||||||||||||||||||||
Sbjct 1087 --------------------------------------------------AAGGTGACTCCACCAGTGATGCAG 1110
Query 1085 AAGGAGATGCTGGACCTGCTGGCCAAGATAAGTCTGAGGTGCCAGAGACTCCAGAAATTCCTAATGAGCTTTCA 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AAGGAGATGCTGGACCTGCTGGCCAAGATAAGTCTGAGGTGCCAGAGACTCCAGAAATTCCTAATGAGCTTTCA 1184
Query 1159 TCCAACATCAGAAGAATTCCTCGGCCTGGGAGTGCAAGACCAGCCCCTCCCCGGGTCAAACGGCAAGACAGCAT 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TCCAACATCAGAAGAATTCCTCGGCCTGGGAGTGCAAGACCAGCCCCTCCCCGGGTCAAACGGCAAGACAGCAT 1258
Query 1233 GGAGGCGCTACAAATGGATAGGTCAGGGAGTGGTAAAACCGTTTCAAATGTGATTACAGAGTCACACAATTCTG 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GGAGGCGCTACAAATGGATAGGTCAGGGAGTGGTAAAACCGTTTCAAATGTGATTACAGAGTCACACAATTCTG 1332
Query 1307 ACAATGAAGAGGATGATCAATTTGTGGTGGAAGCTGCCCCTCAGCTCTCTGAAATGTCAGAAATTGAAATGGTA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 ACAATGAAGAGGATGATCAATTTGTGGTGGAAGCTGCCCCTCAGCTCTCTGAAATGTCAGAAATTGAAATGGTA 1406
Query 1381 ACAGCAGTGGAACTAGAAGAAGAGGAGAAGCATGGTGGACTTGTGAAAAAAATTTTGGAGACGAAGAAAGATTA 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ACAGCAGTGGAACTAGAAGAAGAGGAGAAGCATGGTGGACTTGTGAAAAAAATTTTGGAGACGAAGAAAGATTA 1480
Query 1455 TGAGAAATTGCAGCAGTCACCCAAACCTGGGGAGAAGGAGCGATCTCTCTTTGAGTCGGCATGGAAGAAGGAGA 1528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TGAGAAATTGCAGCAGTCACCCAAACCTGGGGAGAAGGAGCGATCTCTCTTTGAGTCGGCATGGAAGAAGGAGA 1554
Query 1529 AGGACATCGTTTCCAAGGAGATAGAGAAGCTCCGCACGTCCATCCAGACCCTGTGCAAGAGCGCACTTCCCCTG 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AGGACATCGTTTCCAAGGAGATAGAGAAGCTCCGCACGTCCATCCAGACCCTGTGCAAGAGCGCACTTCCCCTG 1628
Query 1603 GGGAAGATCATGGACTACATCCAGGAAGACGTGGATGCCATGCAGAATGAGCTGCAGATGTGGCACAGCGAGAA 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GGGAAGATCATGGACTACATCCAGGAAGACGTGGATGCCATGCAGAATGAGCTGCAGATGTGGCACAGCGAGAA 1702
Query 1677 CAGGCAGCACGCCGAGGCCCTGCAGCAGGAGCAGAGGATCACAGACTGTGCCGTGGAGCCCTTAAAGGCTGAGC 1750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CAGGCAGCACGCCGAGGCCCTGCAGCAGGAGCAGAGGATCACAGACTGTGCCGTGGAGCCCTTAAAGGCTGAGC 1776
Query 1751 TCGCGGAGCTGGAGCAGCTGATCAAAGACCAGCAAGACAAGATCTGTGCTGTGAAGGCCAACATCCTCAAGAAT 1824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TCGCGGAGCTGGAGCAGCTGATCAAAGACCAGCAAGACAAGATCTGTGCTGTGAAGGCCAACATCCTCAAGAAT 1850
Query 1825 GAAGAAAAAATCCAGAAAATGGTATATAGTATCAATTTGACTTCGAGAAGG----------------------- 1875
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GAAGAAAAAATCCAGAAAATGGTATATAGTATCAATTTGACTTCGAGAAGGTGAACACTCAAAAGTTTCAGAGA 1924
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 1925 TGAAAAGTCACCTCAGTTTAAAAGCAAAAAGGAAGATAGAAAATCATTACTCTTTTAAGTTCCAGTTTGCTAAG 1998
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 1999 AAAATGAACAGTTTACAATGTTATTATCCAGCTAATTTTCAGAGCTTTAAAACTGTAAGCATGTTAAGTGTATT 2072
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 2073 AAAAAAACCATGTTTTCTTACCTCCTTCCAGATGGAATACTGGCTAGTTATAAATAGCGCTTCCAAACACCTCT 2146
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 2147 GTGAAAAGTTTTTTTGAAAGCCTGTTCTTTGTGTTTCTGCTGTAACCTGTTTAGTTCTGTACCAGAACTCTCTA 2220
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 2221 GCAGGTAAGTGGTGTGGGCATACCAAGGGAACAGTAGTCCTTTATTTTGGTTTAGTGGAAAGACTTTCAGAGGT 2294
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 2295 CAGTGCCGAATGAAGGATGACTGTGTACTTTTTGATAGGCACTTGATAAGTAGAATGAGGCCTGAAAATGAATA 2368
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 2369 CATTATATTTTTAGTTAATTTCCAATGGAAAGGGCTAACCTCAGCCTGTCTCCATATCAGGTACCTATCAACTG 2442
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 2443 GATTGTTTTCATTTTTGTTTTTTGACCTCTTTGTAATTGCATGTACTTCTCTATGTAATTTTCCTCTTGATCTC 2516
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 2517 TACTATCGTTTGCTTGTGTTTCTAGTCCTTAAAGTTCATAAATTTAAAAAGGAGATTTCAGGATGGCCTTTATG 2590
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 2591 GACGTTGTCTGGACATACATCCTCACTTTCTTCCGCAGTTTACCCTGGTTTTCCTCAGACAGAGGCTAGCGCAG 2664
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 2665 CCCCCCGGAGTCCTTGTTCTCCTTAAGAGGGTCTCGCTCTGCAAAGCATTGGCGCCATGGCTTTTCCTTTGCAT 2738
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 2739 GGGTGTGCATACCGAGAGACAGGCAGCTTAGGAAAAACAACATAAGGAAGACTTAAAAGGATGCACTGATTTAC 2812
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 2813 GACGTTTTTTGATGTTAGCCATTTTTTTGGAAATTGTTTTTTAAAGCAAAAGTTTTTTAAAAACATGGTTTATA 2886
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 2887 GTTTTTCACTTACATATACTATTGTAAATACTTAGCAGAGTCTTAAGTTACTGTATAAAACATTTCATTGTGTT 2960
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 2961 TGAAGACATACTTATGGGTCTTGAGGTCTGGGTCCTAATACTTTTAAATAGTGTATTTATTATGTAAACTGAGG 3034
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 3035 AGTGCCATTTAAAGTGTGAGGATTGCCTGAAAAGGTTTTGTTTCTTTCTTTTTTTTTTTTTTTTGAGATGGAGT 3108
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 3109 CTTACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCACCGCCTCCCGAGTTCAAG 3182
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 3183 TGATTCTCCTGCCTCAGCCTCCTGAGTAACTGGGACTACAGGCGCACGCCACCATGCCCAGCTAATTTTTGTAT 3256
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 3257 TTTCAGTAGAGATGGGGTTTCACCGTGTTGACCAGGATGGTCTCCACCTCCTGACCTCGTGATCCGCCTGCCTC 3330
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 3331 GGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCGGCCAGGTTTTGTTTCTTTAAGGATTAGCA 3404
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 3405 CAAATGGCACCGTTGGGTTTTTCTTCATACAATTTCCAAAATAAATTCTGTACTCAGGTTGTTATATGATTTTC 3478
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 3479 TGAGCTGAATAAGTTCAGGAGCAGATTATTAAGATCTGCCATTCTGAAACGCTGGTCTTTTTCTCCTTCCTATA 3552
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 3553 GTGCACCATAAAATTCTGTTTGATCAGATTATATTACATACATTTTGGGGGAGTGGAGGGACATGAGTTAAGTA 3626
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 3627 GCCCTTCATGTATTTATAATCTCTTTTCTACTGAATCAAATGACTTAGCCATGACCCTGAATGGACCTTGTTTT 3700
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 3701 ACTTCAAGTTGAGATGTCTGCCTTTTATGAATTTGTATATGTGAATAGAGTTTGGGGGTTGCCAAAAATTGCAT 3774
Query 1876 -------------------------------------------------------------------------- 1875
Sbjct 3775 ACATTGTATGTAAGTAAAATTTTTTATGAAGTAGTCTGTCAAATTGTATCATAAAGTTTATTTTTCTTTTATAC 3848
Query 1876 ------------------------------------- 1875
Sbjct 3849 GTAAATCATTAAAAATAATCACATATTTTTTCCATAA 3885
