Construct: ORF ccsbBroadEn_07995
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007866.1_s300c1, BRDN0000387095
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRAF3IP1 (26146)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | NM_001139490.1 | 99.8% | 99.8% | 69C>A;683A>G;906T>C |
| 2 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XM_006712414.2 | 99.6% | 99.6% | (many diffs) |
| 3 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XM_011510948.2 | 94.6% | 94.6% | (many diffs) |
| 4 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | NM_015650.4 | 90.3% | 90.3% | (many diffs) |
| 5 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XM_011510945.2 | 87.6% | 87.6% | (many diffs) |
| 6 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XM_011510944.2 | 86% | 86% | (many diffs) |
| 7 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XM_017003789.1 | 85.9% | 85.9% | (many diffs) |
| 8 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XM_011510946.2 | 82.7% | 82.7% | (many diffs) |
| 9 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XM_011510947.2 | 80% | 80% | (many diffs) |
| 10 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XR_922902.2 | 63.6% | (many diffs) | |
| 11 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XM_011510950.2 | 47.8% | 43.1% | (many diffs) |
| 12 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XR_001738696.1 | 42.7% | (many diffs) | |
| 13 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XR_001738697.1 | 42.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1941
- ORF length:
- 1875
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CGCGGCGGTG GTGAGGCGGA CGCAGGAGGC gctggggaaa gtgatTCGGA 121 GGCCGCCGCT GACAGAGAAG CTGCTGAGCA AGCCCCCGTT CCGCTACCTG CACGACATCA 181 TCACGGAGGT GATTAGAATG ACTGGTTTCA TGAAGGGCCT CTACACAGAC GCCGAGATGA 241 AGTCTGATAA TGTGAAGGAT AAAGATGCAA AAATTAGCTT CCTACAAAAG GCCATAGACG 301 TGGTTGTAAT GGTGTCGGGA GAGCCACTGT TGGCCAAACC AGCCCGAATC GTGGCGGGGC 361 ATGAGCCTGA AAGAACAAAC GAGCTGCTCC AGATAATTGG AAAATGCTGT CTCAACAAGC 421 TCTCTAGTGA CGATGCGGTG CGGAGGGTTT TAGCTGGAGA GAAGGGAGAA GTGAAAGGCC 481 GGGCCTCACT GACCTCAAGA TCTCAGGAAT TGGATAATAA GAATGTGCGA GAAGAAGAGT 541 CCAGAGTTCA CAAAAATACA GAGGATAGAG GAGACGCTGA AATAAAAGAG AGAAGTACAA 601 GCAGAGATCG AAAACAGAAG GAAGAATTGA AAGAAGACCG CAAGCCAAGA GAAAAGGACA 661 AGGACAAGGA GAAGGCCAAG GAGAATGGCG GAAACAGACA CAGAGAAGGG GAGAGAGAGA 721 GAGCCAAAGC CCGGGCCAGG CCAGACAGCG AGCGACAGAA AGACAGAGGC AACAGGGAGC 781 GGGACAGAGA CTCCGAGCGC AAGAAGGAGA CAGAGAGAAA GAGTGAGGGG GGGAAAGAGA 841 AGGAGAGACT GAGAGACAGG GACCGAGAGC GCGACCGGGA CAAAGGGAAG GACAGGGACA 901 GACGGAGAGT GAAAAACGGG GAGCACTCCT GGGACCTGGA CAGGGAGAAG AACAGAGAGC 961 ATGACAAACC CGAGAAAAAG TCAGCAAGCT CAGGGGAGAT GTCTAAAAAG TTATCAGATG 1021 GAACTTTTAA AGACTCCAAG GCTGAAACAG AGACTGAGAT TTCCACTAGA GCTTCCAAGT 1081 CATTGACAAC AAAAACATCA AAACGGCGAT CCAAAAATTC AGTGGAAGGT GACTCCACCA 1141 GTGATGCAGA AGGAGATGCT GGACCTGCTG GCCAAGATAA GTCTGAGGTG CCAGAGACTC 1201 CAGAAATTCC TAATGAGCTT TCATCCAACA TCAGAAGAAT TCCTCGGCCT GGGAGTGCAA 1261 GACCAGCCCC TCCCCGGGTC AAACGGCAAG ACAGCATGGA GGCGCTACAA ATGGATAGGT 1321 CAGGGAGTGG TAAAACCGTT TCAAATGTGA TTACAGAGTC ACACAATTCT GACAATGAAG 1381 AGGATGATCA ATTTGTGGTG GAAGCTGCCC CTCAGCTCTC TGAAATGTCA GAAATTGAAA 1441 TGGTAACAGC AGTGGAACTA GAAGAAGAGG AGAAGCATGG TGGACTTGTG AAAAAAATTT 1501 TGGAGACGAA GAAAGATTAT GAGAAATTGC AGCAGTCACC CAAACCTGGG GAGAAGGAGC 1561 GATCTCTCTT TGAGTCGGCA TGGAAGAAGG AGAAGGACAT CGTTTCCAAG GAGATAGAGA 1621 AGCTCCGCAC GTCCATCCAG ACCCTGTGCA AGAGCGCACT TCCCCTGGGG AAGATCATGG 1681 ACTACATCCA GGAAGACGTG GATGCCATGC AGAATGAGCT GCAGATGTGG CACAGCGAGA 1741 ACAGGCAGCA CGCCGAGGCC CTGCAGCAGG AGCAGAGGAT CACAGACTGT GCCGTGGAGC 1801 CCTTAAAGGC TGAGCTCGCG GAGCTGGAGC AGCTGATCAA AGACCAGCAA GACAAGATCT 1861 GTGCTGTGAA GGCCAACATC CTCAAGAATG AAGAAAAAAT CCAGAAAATG GTATATAGTA 1921 TCAATTTGAC TTCGAGAAGG TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 1981 attgcttatc aatttgttgc aacgaac