Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08064
- Subject:
- XR_001746272.1
- Aligned Length:
- 4850
- Identities:
- 1675
- Gaps:
- 3174
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTCACTTCCGGTCGACGGCGGAAGGCGGAAGGCGGAGCGGTCCCTGCAACCCGGCCGGCGGGAACTGCCTTCTA 74
Query 1 -------------------------------------ATGCCGAGCCCGCAGCTTCTGGTGCTCTTCGGCAGCC 37
|||||||||||||||||||||||||||||||||||||
Sbjct 75 GTTTTTAGTCTCAGACCAGACCACCGGGCGCACCCCGATGCCGAGCCCGCAGCTTCTGGTGCTCTTCGGCAGCC 148
Query 38 AGACAGGCACGGCTCAGGATGTGTCGGAGAGACTGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGTG 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 AGACAGGCACGGCTCAGGATGTGTCGGAGAGACTGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGTG 222
Query 112 CAGGCCCTGGACTCCTACCCGGTGGTGAATCTGATTAACGAGCCCCTGGTGATATTTGTTTGTGCAACTACAGG 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CAGGCCCTGGACTCCTACCCGGTGGTGAATCTGATTAACGAGCCCCTGGTGATATTTGTTTGTGCAACTACAGG 296
Query 186 CCAAGGAGACCCCCCTGACAACATGAAGAACTTCTGGAGGTTTATATTCCGGAAGAACCTGCCCTCCACTGCCC 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCAAGGAGACCCCCCTGACAACATGAAGAACTTCTGGAGGTTTATATTCCGGAAGAACCTGCCCTCCACTGCCC 370
Query 260 TCTGTCAGATGGACTTTGCCGTCCTGGGCCTCGGGGACTCCTCATACGCCAAGTTCAACTTCGTGGCCAAGAAG 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCTGTCAGATGGACTTTGCCGTCCTGGGCCTCGGGGACTCCTCATACGCCAAGTTCAACTTCGTGGCCAAGAAG 444
Query 334 CTGCACCGACGGCTACTGCAGCTTGGGGGCAGCGCCCTCCTGCCCGTGTGCCTGGGCGATGACCAGCATGAGCT 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTGCACCGACGGCTACTGCAGCTTGGGGGCAGCGCCCTCCTGCCCGTGTGCCTGGGCGATGACCAGCATGAGCT 518
Query 408 GGGGCCCGACGCTGCTGTGGACCCCTGGCTGCGAGACTTGTGGGACAGGGTTCTGGGGCTGTACCCGCCGCCTC 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGGGCCCGACGCTGCTGTGGACCCCTGGCTGCGAGACTTGTGGGACAGGGTTCTGGGGCTGTACCCGCCGCCTC 592
Query 482 CGGGCCTCACTGAGATCCCTCCCGGAGTCCCCCTGCCCTCCAAGTTCACCCTGCTGTTCCTCCAAGAGGCACCC 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CGGGCCTCACTGAGATCCCTCCCGGAGTCCCCCTGCCCTCCAAGTTCACCCTGCTGTTCCTCCAAGAGGCACCC 666
Query 556 AGCACGGGCTCTGAGGGGCAGCGGGTAGCTCACCCCGGCTCTCAGGAGCCCCCGTCAGAGTCGAAGCCCTTCCT 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGCACGGGCTCTGAGGGGCAGCGGGTAGCTCACCCCGGCTCTCAGGAGCCCCCGTCAGAGTCGAAGCCCTTCCT 740
Query 630 AGCACCCATGATCTCCAACCAGAGAGTCACCGGCCCCTCCCACTTCCAGGACGTTCGGCTGATTGAGTTTGACA 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGCACCCATGATCTCCAACCAGAGAGTCACCGGCCCCTCCCACTTCCAGGACGTTCGGCTGATTGAGTTTGACA 814
Query 704 TCTTGGGCTCTGGCATCAGCTTTGCTGCTGGTGATGTGGTGCTGATTCAGCCCTCCAACTCGGCTGCCCATGTC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TCTTGGGCTCTGGCATCAGCTTTGCTGCTGGTGATGTGGTGCTGATTCAGCCCTCCAACTCGGCTGCCCATGTC 888
Query 778 CAGCGGTTCTGCCAGGTGCTGGGCCTGGACCCTGACCAGCTCTTCATGCTGCAGCCGCGGGAGCCAGATGTCTC 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CAGCGGTTCTGCCAGGTGCTGGGCCTGGACCCTGACCAGCTCTTCATGCTGCAGCCGCGGGAGCCAGATGTCTC 962
Query 852 CTCCCCCACGAGGCTGCCCCAGCCCTGCTCCATGCGGCACCTCGTGTCCCACTACCTGGACATCGCCAGCGTGC 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CTCCCCCACGAGGCTGCCCCAGCCCTGCTCCATGCGGCACCTCGTGTCCCACTACCTGGACATCGCCAGCGTGC 1036
Query 926 CTCGCCGCTCCTTCTTCGAACTCCTGGCCTGTCTATCCCTCCATGAGCTGGAGCGGGAGAAGCTGCTGGAGTTC 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTCGCCGCTCCTTCTTCGAACTCCTGGCCTGTCTATCCCTCCATGAGCTGGAGCGGGAGAAGCTGCTGGAGTTC 1110
Query 1000 AGTTCTGCCCAAGGCCAGGAGGAGCTCTTTGAATACTGCAACCGGCCCCGCAGGACCATCCTGGAGGTGCTCTG 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AGTTCTGCCCAAGGCCAGGAGGAGCTCTTTGAATACTGCAACCGGCCCCGCAGGACCATCCTGGAGGTGCTCTG 1184
Query 1074 TGACTTCCCGCACACAGCTGCCGCCATCCCTCCCGACTACCTGTTGGACCTCATCCCCGTTATCCGGCCGAGGG 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGACTTCCCGCACACAGCTGCCGCCATCCCTCCCGACTACCTGTTGGACCTCATCCCCGTTATCCGGCCGAGGG 1258
Query 1148 CCTTCTCCATCGCCTCCTCGCTGCTGACTCACCCCTCACGGCTGCAGATCCTCGTGGCTGTAGTGCAGTTCCAG 1221
|||||||||||||||||||||||||
Sbjct 1259 CCTTCTCCATCGCCTCCTCGCTGCT------------------------------------------------- 1283
Query 1222 ACTCGCCTCAAGGAGCCCCGCCGGGGCCTCTGCTCCTCCTGGCTGGCATCCCTGGACCCTGGGCAAGGACCTGT 1295
||||||||
Sbjct 1284 ------------------------------------------------------------------GGACCTGT 1291
Query 1296 CCGGGTGCCCCTCTGGGTGCGGCCTGGGAGTCTGGCCTTCCCAGAGACACCAGACACACCTGTGATCATGGTGG 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 CCGGGTGCCCCTCTGGGTGCGGCCTGGGAGTCTGGCCTTCCCAGAGACACCAGACACACCTGTGATCATGGTGG 1365
Query 1370 GGCCTGGCACTGGGGTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGGGCCAGACTGGAAACTTC 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 GGCCTGGCACTGGGGTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGGGCCAGACTGGAAACTTC 1439
Query 1444 TTGTTTTTTGGCTGCCGCTGGCGGGACCAAGACTTCTACTGGGAGGCTGAGTGGCAGGAGCTGGAGAAGCGGGA 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TTGTTTTTTGGCTGCCGCTGGCGGGACCAAGACTTCTACTGGGAGGCTGAGTGGCAGGAGCTGGAGAAGCGGGA 1513
Query 1518 CTGTCTGACCCTCATCCCTGCCTTCTCCCGGGAACAGGAGCAGAAAATATATGTGCAGCACCGGCTCCGGGAGC 1591
||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 1514 CTGTCTGACCCTCATCCCTGCCTTCTCCCGGGAACAGGAGCAGAAAGTATATGTGCAGCACCGGCTCCGGGAGC 1587
Query 1592 TGGGGTCGCTTGTGTGGGAACTGCTGGACCGCCAGGGTGCATACTTCTACCTGGCAGGCAACGCCAAGTCCATG 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 TGGGGTCGCTTGTGTGGGAACTGCTGGACCGCCAGGGTGCATACTTCTACCTGGCAGGCAACGCCAAGTCCATG 1661
Query 1666 CCAGCGGACGTCTCGGAAGCCCTGATGTCCATCTTCCAGGAGGAGGGTGGACTCTGCAGCCCGGACGCAGCCGC 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 CCAGCGGACGTCTCGGAAGCCCTGATGTCCATCTTCCAGGAGGAGGGTGGACTCTGCAGCCCGGACGCAGCCGC 1735
Query 1740 GTATCTAGCCAGGCTCCAGCAGACACGGCGCTTCCAGACAGAGACGTGGGCC---------------------- 1791
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 GTATCTAGCCAGGCTCCAGCAGACACGGCGCTTCCAGACAGAGACGTGGGCCTGAGGCCCGCGGCTGCCCGTGC 1809
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 1810 CCCCTCTGACAGCCATCCTCCTGGGAGCCCAGGAAGGCATCCACGAGGGAGCTCCTGGCCAGCAGCCGTCATCC 1883
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 1884 TCTCGGACCAGCCAGCTGGTCCTCTGGGAACAGCCAGCTCCCGAGCACAGCCGCACTCCTGTTGACCCTGGATC 1957
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 1958 CCACCCTTTGAGCCTGACCCCACTGCAGCCTCTGCCCAGCCAGCCCTGCGCTCCCCCACCCTGACAGTGAGCTG 2031
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 2032 TGTCCTCGTCCCCCCACCCCCTTCCCAGTCAAGGTGGTGGCCTGGGCCGCTCCACCTCACCGGTGCAGTGACCC 2105
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 2106 AGGACGGCATCAGCAGCCCAGTGAGCACCAGGGGTGGCATAGGGCACCCATGAGGCTGCGCTGCACTCCTCTGC 2179
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 2180 CCTGGGGCCACCTCGGCTGCTGCAGCCTGCCCAGCAGCACATTCCAGTCACTGCCCCCGCACTCCCACAGGGCT 2253
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 2254 CAGGCTGGGCTCAGAGGCCACTGAGATGCCAGCTCCTTGAGAGCAGTGGGGGTGTCCCAGGCCAGAGCAGCCTC 2327
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 2328 TTCCTCTCCTGGTCCCAGAAAAACCCTTGCAGTAAATGGTGGCCTCTGGGTGGTTACTTCTAGCGCAGGCTTCC 2401
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 2402 TTCCTTCCTCTAGCTCCTCCCGGTGCCCTGGGTGCTGGGTGCTGGATGGATGGGCGTCCTCTAGCTCCTCCCGG 2475
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 2476 TGCCCTGGGTGCTGGGTGCTGGATGGGTGGGCGTCCTCTAGCTCCTCCCGGTGCCCTGGGTGCTGGGTGCTGGA 2549
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 2550 TGGGTGGGCGCCACGGTGCACCCTTGTTGGGCTGCCTGTGCCCGAGTGGCCTCTGCAGCTCTTATGTCTGCCTC 2623
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 2624 TAATGGGATGTGCGCCCTGACTGCCTCGTTCTTAAGGGCATAGTGGGTCGGCTAAGATCTGATCGCCAGGACTG 2697
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 2698 CGTTCTGGGCAGGTGCTGGGAAGGCGGAACCAAGCCGTCCGTGCCGCTAGGGAGCCGAGACTGCCGGAAAGAGG 2771
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 2772 AGCGGCAGGAGGGGGCGTGGTTGTGCAGCCCCACCCCCGGGAGGGGCTTTAGGCACTGGGAAGGAAAGTCCTGT 2845
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 2846 TGGAGGAGTTCGGTGGCTGTTCACACCCGCCTCGCTGTCTTGGAGTCTTGATCTGTCGTCGGCGGGTCGCTGGC 2919
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 2920 ACAGGACTAAACATGGCTGAGGCTGGGCTCCAGCCAGATCTGGCTGGGGACAGCACCGCGTGGGCCCAGGATCC 2993
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 2994 ACCCAGAGCAGGCAGGCCTTGCTGGGGCCCCAGTCAAGTCCACTTCCAGTGAGGAGAGCCAGCCGGGAGGTCAG 3067
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 3068 TGCCAGAGCTCTGGTGGAGCCCAGACCCTGCCTTCCCTGAGGGCCGCCCCTGTCGCCGCCCTGGGGTCCCTGTC 3141
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 3142 CTCCTATCCTGACTCCTGCCCCAGGGCCACCACCCCTGAACTGTGCCCTGGGGCCCCCACCCTCCACCTGGCCG 3215
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 3216 ACTCCAGCTCTGGGCCTGTCAGTCCACCTGGGTCCTCTCTGGGCCCTGAGTGCCTGGACCCTCTGTGCCAAGCA 3289
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 3290 CCAGCAAGCAAAGGGGATGACCTTGGGCACCCCCAAGGTGCTGAGACTACAGCCAGTGAGCCCCTGCTGGGGGC 3363
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 3364 CAAAGCCATGGAGGGTGCCTGGGCCCTTCCAACCTGGAAGGAGGAGGGGAGAGAGCAGGCAGCAGGGCAGGGGG 3437
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 3438 AAGAGGAGGAGTGCCCGATCTGCACAGAGCCCTACGGGCCCAGAGAGCGCCGCCTGGCCCTGCTGAACTGTAGC 3511
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 3512 CACGGCCTGTGTGTGGGCTGCCTGCACAGGCTGCTGGGCTCGGCCTCCAGTGCCGACCTGGGCCGGGTGCGCTG 3585
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 3586 CCCGCTGTGCCGCCAGAAGACGCCCGTGCTGGAATGGGAGATCTGCCGGCTACAGGAGGAGCTGCTACAGGCCG 3659
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 3660 ACGGGCCCTCACGCCAGCCCCGCCGAGAGGCCCCTGCATCCTATCACCGCAACCCTGGGCCCTGGGGCTCCCTG 3733
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 3734 GAGCACCGCTACCAGCTGCGCTTCCTGGCAGGGCCCGTGGGCGGCCGGGGCTGCCTGCCCTTCCTGCCCTGTCC 3807
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 3808 ACCCTGCCTGGGTGCCCGGCTCTGGACCCTGCGGGAGCGGGGACCCTGTGCCCGCCGCCTGGCGCTGCTGAGCC 3881
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 3882 TGCTGGCCCTTGAGCTTCTGGGGCTGCTGCTGGTCTTCACGCCGCTCCTGCTGCTGGGACTGCTCTTCGTGCTC 3955
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 3956 CTGGACCGCTCTGGCCGCTGAGCAGAGCCCAGGACAGCCCCGCCGCCAACAGGCCAGGGGGCCCAGACTGGCCC 4029
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 4030 ACGTCCCCATGCCTGGGTGCTGTGAGGCCTGATGACCAGGCTGGAAAAACCCAAGGTTGGGTCCAGGGCAGTGG 4103
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 4104 CCTTCAATCAAGACCTCCCATTGCTGAACCCACAACCAGGGCTACCCAGAGGCCTGACCCTGCCAGAGTCCATG 4177
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 4178 GCTGCACTGCTGCCCAGACACTAGCTGAACCCAAGGACACCAGCGCCCAAGGACAGCTCCTGGAGGAGGCCAGC 4251
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 4252 CCAGCAGGAAAGTCTGTGAGCAGGACCCCATTCACCCTGCGGCAGACGGGCACCGTACTGGCCACGGGCTGACG 4325
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 4326 CCGGCCACACTTCCCCTCCGAGGGCCAGCTGAGCACAGCAGGCATGAAAGCAAACAGAGATACAGCAGTGAGTC 4399
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 4400 AGTTCCTTGGAGAGGGCAGGGACTCCGCCCACCCTGTGTTCAGATAAGGGCCAGTGTGTGTCCCTGAAGGTCAG 4473
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 4474 GCCAGCCGGGGGAGGGGTCCATGCTGCGAAAATTCAGCCTGCAAAGGCTCCTCTCCCCACTTGATCAGGCCCAG 4547
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 4548 ACCAGGTGGGGGTTGGCGCTGGCCTGTGTTGCAGGGGACAAGGGCCCACCCAGGCCTTGGAACATAAGCTCTGC 4621
Query 1792 -------------------------------------------------------------------------- 1791
Sbjct 4622 CCCTGCACACCCTCATGTCACCACACCTGGGATGGAGACATCAGGTGGCCCAGCGAGAGATGGAGGACTGATCC 4695
Query 1792 ---------------------------------------- 1791
Sbjct 4696 TGGAACGTGAAGCAGCTTTCAATAAACCAGCTCCTGGGGA 4735
