Construct: ORF ccsbBroadEn_08064
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007559.1_s300c1, BRDN0000391177
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NDOR1 (27158)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27158 | NDOR1 | NADPH dependent diflavin ox... | NM_014434.3 | 99.9% | 99.8% | 1564G>A |
| 2 | human | 27158 | NDOR1 | NADPH dependent diflavin ox... | NM_001144028.3 | 98.7% | 98.6% | 1172_1173ins21;1543G>A |
| 3 | human | 27158 | NDOR1 | NADPH dependent diflavin ox... | NM_001144026.3 | 98.4% | 98.3% | 1551_1577del;1591G>A |
| 4 | human | 27158 | NDOR1 | NADPH dependent diflavin ox... | XM_017014627.1 | 92.9% | 90.6% | 1564G>A;1623_1624ins22;1665_1666ins104 |
| 5 | human | 27158 | NDOR1 | NADPH dependent diflavin ox... | XM_011518545.1 | 92.8% | 92.7% | 410_411ins102;1449_1475del;1489G>A |
| 6 | human | 27158 | NDOR1 | NADPH dependent diflavin ox... | XM_017014626.1 | 91.5% | 89.2% | (many diffs) |
| 7 | human | 27158 | NDOR1 | NADPH dependent diflavin ox... | NM_001144027.3 | 87.2% | 84.9% | (many diffs) |
| 8 | human | 27158 | NDOR1 | NADPH dependent diflavin ox... | XM_011518547.1 | 87% | 86.9% | 0_1ins207;1344_1370del;1384G>A |
| 9 | human | 27158 | NDOR1 | NADPH dependent diflavin ox... | XM_011518548.2 | 53.2% | 53.1% | 0_1ins822;729_755del;769G>A |
| 10 | human | 27158 | NDOR1 | NADPH dependent diflavin ox... | XR_001746272.1 | 34.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1857
- ORF length:
- 1791
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC GAGCCCGCAG CTTCTGGTGC TCTTCGGCAG CCAGACAGGC ACGGCTCAGG 121 ATGTGTCGGA GAGACTGGGT CGCGAGGCCC GGCGCCGGCG GCTTGGCTGC CGGGTGCAGG 181 CCCTGGACTC CTACCCGGTG GTGAATCTGA TTAACGAGCC CCTGGTGATA TTTGTTTGTG 241 CAACTACAGG CCAAGGAGAC CCCCCTGACA ACATGAAGAA CTTCTGGAGG TTTATATTCC 301 GGAAGAACCT GCCCTCCACT GCCCTCTGTC AGATGGACTT TGCCGTCCTG GGCCTCGGGG 361 ACTCCTCATA CGCCAAGTTC AACTTCGTGG CCAAGAAGCT GCACCGACGG CTACTGCAGC 421 TTGGGGGCAG CGCCCTCCTG CCCGTGTGCC TGGGCGATGA CCAGCATGAG CTGGGGCCCG 481 ACGCTGCTGT GGACCCCTGG CTGCGAGACT TGTGGGACAG GGTTCTGGGG CTGTACCCGC 541 CGCCTCCGGG CCTCACTGAG ATCCCTCCCG GAGTCCCCCT GCCCTCCAAG TTCACCCTGC 601 TGTTCCTCCA AGAGGCACCC AGCACGGGCT CTGAGGGGCA GCGGGTAGCT CACCCCGGCT 661 CTCAGGAGCC CCCGTCAGAG TCGAAGCCCT TCCTAGCACC CATGATCTCC AACCAGAGAG 721 TCACCGGCCC CTCCCACTTC CAGGACGTTC GGCTGATTGA GTTTGACATC TTGGGCTCTG 781 GCATCAGCTT TGCTGCTGGT GATGTGGTGC TGATTCAGCC CTCCAACTCG GCTGCCCATG 841 TCCAGCGGTT CTGCCAGGTG CTGGGCCTGG ACCCTGACCA GCTCTTCATG CTGCAGCCGC 901 GGGAGCCAGA TGTCTCCTCC CCCACGAGGC TGCCCCAGCC CTGCTCCATG CGGCACCTCG 961 TGTCCCACTA CCTGGACATC GCCAGCGTGC CTCGCCGCTC CTTCTTCGAA CTCCTGGCCT 1021 GTCTATCCCT CCATGAGCTG GAGCGGGAGA AGCTGCTGGA GTTCAGTTCT GCCCAAGGCC 1081 AGGAGGAGCT CTTTGAATAC TGCAACCGGC CCCGCAGGAC CATCCTGGAG GTGCTCTGTG 1141 ACTTCCCGCA CACAGCTGCC GCCATCCCTC CCGACTACCT GTTGGACCTC ATCCCCGTTA 1201 TCCGGCCGAG GGCCTTCTCC ATCGCCTCCT CGCTGCTGAC TCACCCCTCA CGGCTGCAGA 1261 TCCTCGTGGC TGTAGTGCAG TTCCAGACTC GCCTCAAGGA GCCCCGCCGG GGCCTCTGCT 1321 CCTCCTGGCT GGCATCCCTG GACCCTGGGC AAGGACCTGT CCGGGTGCCC CTCTGGGTGC 1381 GGCCTGGGAG TCTGGCCTTC CCAGAGACAC CAGACACACC TGTGATCATG GTGGGGCCTG 1441 GCACTGGGGT AGCCCCCTTC CGAGCAGCCA TCCAGGAGCG TGTGGCCCAG GGCCAGACTG 1501 GAAACTTCTT GTTTTTTGGC TGCCGCTGGC GGGACCAAGA CTTCTACTGG GAGGCTGAGT 1561 GGCAGGAGCT GGAGAAGCGG GACTGTCTGA CCCTCATCCC TGCCTTCTCC CGGGAACAGG 1621 AGCAGAAAAT ATATGTGCAG CACCGGCTCC GGGAGCTGGG GTCGCTTGTG TGGGAACTGC 1681 TGGACCGCCA GGGTGCATAC TTCTACCTGG CAGGCAACGC CAAGTCCATG CCAGCGGACG 1741 TCTCGGAAGC CCTGATGTCC ATCTTCCAGG AGGAGGGTGG ACTCTGCAGC CCGGACGCAG 1801 CCGCGTATCT AGCCAGGCTC CAGCAGACAC GGCGCTTCCA GACAGAGACG TGGGCCTGCC 1861 CAACTTTCTA GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1921 aac