Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_08255
• Subject: NM_001253695.1
• Aligned Length: 2200
• Identities: 1813
• Gaps: 56

Alignment

Query    1  ATGGAGGGCTCACGTCCCCGCGCCCCGAGCGGCCACTTAGCGCCGTCGCCGCCGGCTTTCGACGGCGAGCTGGA  74
            |||||||||||||||||||||..||.|..|||||||.|||.|||.||.||.||.||.|||||||||||||||||
Sbjct    1  ATGGAGGGCTCACGTCCCCGCATCCTGGTCGGCCACCTAGAGCCTTCCCCACCAGCCTTCGACGGCGAGCTGGA  74

Query   75  TCTGCAGCGATACTCCAACGGGCCAGCCGTGAGCG------------CAGGGTCGCTCGGGATGGGAGCGGTGA  136
            |||||||||.|||||||||||.||||..||.||.|            |.||.||||..|||||||||||.|||.
Sbjct   75  TCTGCAGCGCTACTCCAACGGACCAGGTGTCAGTGGGACTCCAGGACCCGGCTCGCCTGGGATGGGAGCAGTGG  148

Query  137  GCTGGTCTGAGAGTCGTGCAGGCGAACGGCGCTTCCCCTGCCCTGTATGCGGGAAGCGCTTCCGCTTCAACTCT  210
            |.||||||||||.||||||||||||||||||||||||.||.|||||.|||||.|||||||||||.|||||.||.
Sbjct  149  GTTGGTCTGAGACTCGTGCAGGCGAACGGCGCTTCCCTTGTCCTGTGTGCGGAAAGCGCTTCCGATTCAATTCC  222

Query  211  ATCCTTGCTTTGCACCTGCGGGCGCACCCAGGAGCCCAGGCCTTCCAGTGCCCTCACTGCGGCCACCGCGCGGC  284
            |||.|.||||||||||||.|.||.|||||.||.|||||.||||||||||||||.||.||||||||||||||.||
Sbjct  223  ATCTTGGCTTTGCACCTGAGAGCCCACCCGGGCGCCCAAGCCTTCCAGTGCCCACATTGCGGCCACCGCGCAGC  296

Query  285  GCAGCGGGCTCTGCTGCGCTCGCACCTGCGCACACACCAGCCCGAGCGCCCACGTAGTCCTGCTGCACGCCTGT  358
            |||||||||||||||||||||.|||||.||.||.||||||||.|||||.|||||.||.|||||||||||.||||
Sbjct  297  GCAGCGGGCTCTGCTGCGCTCACACCTCCGAACGCACCAGCCGGAGCGTCCACGCAGCCCTGCTGCACGGCTGT  370

Query  359  TGCTGGAGTTGGAAGAGCGCGCGCTACTACGCGAGGCCCGACTGGGGAGAGCCCGAAGCTCAGGGGGCATGCAG  432
            |||||||||||||.||.|||||.||.||.|||||.||||||||.|||||||||.||||||||||.|||||||||
Sbjct  371  TGCTGGAGTTGGAGGAACGCGCCCTGCTTCGCGAAGCCCGACTCGGGAGAGCCAGAAGCTCAGGCGGCATGCAG  444

Query  433  GCCACCCCTGCCACTGAGGGTCTGGCGCGGCCCCAGGCTCCTTCATCGTCCGCCTTCCGTTGCCCCTACTGCAA  506
            .|||.|||||||.|.|||||.|||||.||.||.||||..|||||.||.||.||||||||||||||.|.||||||
Sbjct  445  TCCAGCCCTGCCGCAGAGGGCCTGGCTCGCCCTCAGGTCCCTTCCTCATCTGCCTTCCGTTGCCCTTTCTGCAA  518

Query  507  AGGCAAGTTTCGCACCTCGGCGGAGCGCGAACGCCACCTGCACATCCTGCATAGGCCCTGGAAGTGCGGCCTGT  580
            ||||||||||||||||||.||||||||.||||||||||||||.||||||||.|||||||||||||||.||.|||
Sbjct  519  AGGCAAGTTTCGCACCTCAGCGGAGCGGGAACGCCACCTGCATATCCTGCACAGGCCCTGGAAGTGCAGCTTGT  592

Query  581  GCAGTTTCGGCTCCAGCCAGGAGGAGGAGCTGCTGCACCACAGCCTGACGGCCCACGGGGCTCCCGAGCGTCCC  654
            |||||||.|||||||||||||||||||||.|||||||||||||.||||||||||||||||||.|||||||.|||
Sbjct  593  GCAGTTTTGGCTCCAGCCAGGAGGAGGAGTTGCTGCACCACAGTCTGACGGCCCACGGGGCTTCCGAGCGCCCC  666

Query  655  CTGGCGGCCACCTCCGCTGCGCCTCCGCCTCAGCCTCAGCCTCAGCCTCCACCCCAGCCCGAACCCAGATCAGT  728
            ||||||||.||.|               ||..||||.|.||.|.||||||||||||||..|||||||||||.| 
Sbjct  667  CTGGCGGCTACAT---------------CTACGCCTGAACCCCCGCCTCCACCCCAGCAAGAACCCAGATCTG-  724

Query  729  CCC-----CC--AGCCGGAGCCGGA------GCCGGAGCCCGAACGTGAGGCAACCCCGACCACAGCTCCTGCC  789
            |||     ||  ||||.|||||.||      |||.|||||.||.||.|||||||.|||..||.||.|||||||.
Sbjct  725  CCCTTGAGCCTGAGCCTGAGCCTGAACCTAGGCCAGAGCCTGACCGGGAGGCAAACCCTGCCCCAACTCCTGCA  798

Query  790  GCTCCCGAGGAGCCCCCAGCGCCTCCGGAGTTCCGCTGCCAAGTGTGCGGCCAGAGCTTTACACAGTCTTGGTT  863
            .||||.|||||||||||.|||||.||.||.|||||.|||||.||||||||||||||||||||||||||.|||||
Sbjct  799  CCTCCGGAGGAGCCCCCTGCGCCACCTGAATTCCGTTGCCAGGTGTGCGGCCAGAGCTTTACACAGTCCTGGTT  872

Query  864  TCTCAAGGGCCACATGCGTAAGCACAAGGCCTCCTTCGATCATGCGTGTCCGGTGTGCGGCCGCTGCTTCAAGG  937
            |||||||||.||||||||.|||||||||||||||||.|||||||||||.||.||.||.||.|||||||||||||
Sbjct  873  TCTCAAGGGTCACATGCGCAAGCACAAGGCCTCCTTTGATCATGCGTGCCCCGTATGTGGTCGCTGCTTCAAGG  946

Query  938  AGCCCTGGTTCCTTAAGAACCACATGAAGGTGCACGCCAGCAAGCTGGGCCCACTGCGTGCCCCGGGGCCTGCC  1011
            |||||||||||||||||||||||||||||||||||.|||||||||||||.||..|||||||.||.||.||||.|
Sbjct  947  AGCCCTGGTTCCTTAAGAACCACATGAAGGTGCACACCAGCAAGCTGGGTCCTTTGCGTGCTCCAGGCCCTGGC  1020

Query 1012  TCCGGGCCTGCCCGCGCCCCCCAGCCTCCTGACCTCGGCCTGCTGGCCTATGAGCCGTTGGGCCCAGCGCTCCT  1085
            ||.|..||||||.|.|||||.||||||||.|||||..||||.|||||.||||||||..|||||||.||.|||||
Sbjct 1021  TCTGCACCTGCCAGGGCCCCTCAGCCTCCCGACCTGAGCCTACTGGCATATGAGCCACTGGGCCCTGCACTCCT  1094

Query 1086  CTTGGCCCCGGCTCCCACCCCGGCCGAGCGCCGTGAGCCCCCGAGCCTCTTGGGCTACCTGAGCCTGCGAGCTG  1159
            |.|||||||.||.|||.|.|||||.||||||||.||||||||.||||||||.|||||||||||..|.|||||||
Sbjct 1095  CCTGGCCCCAGCACCCGCTCCGGCTGAGCGCCGAGAGCCCCCAAGCCTCTTAGGCTACCTGAGTGTACGAGCTG  1168

Query 1160  GCGAGGGCCGGCCCAACGGCGAGGGTGCTGAGCCC----GGTCCCGGCCGCAGCTTCGGAGGCTTCCGCCCGCT  1229
            |.||.|..||.|||||.||.||||||||||| |||    |||   |||||.||||..|||||.||||||||.||
Sbjct 1169  GGGAAGTACGACCCAATGGTGAGGGTGCTGA-CCCTGGAGGT---GGCCGAAGCTATGGAGGGTTCCGCCCACT  1238

Query 1230  GTCCTCTGCTCTCCCGGCCCGGGCTCGCCGGCACCGTGCGGAGGAGCCTGAGGAAGAAGAGGAGGTGGTGGAGG  1303
            |.|.||.|||||.||...|||||||||.||.||||||.|.|||||.||.||.||.|||||.||.||||||||||
Sbjct 1239  GCCTTCAGCTCTTCCCAACCGGGCTCGGCGACACCGTACAGAGGAACCAGAAGAGGAAGAAGAAGTGGTGGAGG  1312

Query 1304  CCGAGGAGGAAACCTGGGCCCGGGGCAGGTCGCTGGGCTCTCTGGCTTCCCTGCACCCGCGCCCGGGTGAGGGA  1377
            |.||.|||||.|.|||||||||.|||||||||||||||||||||.|||||||||||||...|||.||||||||.
Sbjct 1313  CTGAAGAGGAGAGCTGGGCCCGAGGCAGGTCGCTGGGCTCTCTGACTTCCCTGCACCCCAACCCAGGTGAGGGG  1386

Query 1378  CCGGGGCACTCTGCCTCTGCTGCTGGGGCCCAGGCAAGATCGACCGCCACGCAGGAAGAGAATGGGCTGTTGGT  1451
            .|.||.||..||||..||||.||.|||.|||||||.|||||.||.|||||.||.|||||.||.||||||.||||
Sbjct 1387  TCAGGACAGCCTGCACCTGCCGCGGGGACCCAGGCGAGATCCACGGCCACCCAAGAAGAAAACGGGCTGCTGGT  1460

Query 1452  TGGAGGGACCCGGCCTGAAGGGGGCCGGGGCGCCACCGGCAAGGATTGTCCTTTCTGCGGAAAATCTTTCCGCT  1525
            |||||||||.||..||||||.||||||.||.|||||.||||||||.||.||.|||||.||||||||||||||||
Sbjct 1461  TGGAGGGACACGATCTGAAGCGGGCCGTGGGGCCACTGGCAAGGACTGCCCCTTCTGTGGAAAATCTTTCCGCT  1534

Query 1526  CAGCACATCACCTCAAAGTGCATCTGCGAGTGCACACAGGCGAGCGGCCCTACAAGTGTCCGCACTGCGACTAC  1599
            |.||.||||||.|.|||||||||||.||.|||||||||||.|||||.||||||||||||||.|||||||||||.
Sbjct 1535  CGGCGCATCACTTAAAAGTGCATCTCCGTGTGCACACAGGTGAGCGTCCCTACAAGTGTCCACACTGCGACTAT  1608

Query 1600  GCGGGCACCCAGTCCGGCTCGCTCAAGTATCACCTACAGCGCCACCACCGGGAGCAGAGGAGCGGGGCCGGCCC  1673
            ||.||.||||||||.||||||||||||||||||||.|||||.||||||||.||||||||||||.|.||.||.||
Sbjct 1609  GCAGGTACCCAGTCGGGCTCGCTCAAGTATCACCTTCAGCGTCACCACCGAGAGCAGAGGAGCAGTGCGGGTCC  1682

Query 1674  CGGGCCACCCCCGGAGCCACCGCCTCCTTCCCAGCGGGGTTC---GGCCCCGCAATCTGGAGCCAAGCCGTCTC  1744
            .|||||.|||||.||.||.|||||.||||||||||||||.||   |...|||||.||.|||||||||||..|||
Sbjct 1683  TGGGCCTCCCCCAGAACCCCCGCCACCTTCCCAGCGGGGCTCACTGCAGCCGCAGTCAGGAGCCAAGCCAACTC  1756

Query 1745  CGCAGCCT--GCGACCTGGGTGGAGGGCGCCTCAAGTCCCCGGCCTCCTTCTAGCGGTGCTGGGCCGGGGTCCC  1816
            .|  ||||  ||.||||||||.||||||.|..|||||.|||||||||||||.|||.|..|.||.||.|||||||
Sbjct 1757  AG--GCCTCAGCCACCTGGGTAGAGGGCACTGCAAGTACCCGGCCTCCTTCGAGCAGCACCGGACCAGGGTCCC  1828

Query 1817  GTCGGAAGCCCGCCAGCCCTGGGAGGACCCTGCGCAACGGGCGAGGCGGTGAGGCCGAACCCCTGGACCTGTCC  1890
            ||.|||||||.||.||||||||||||||||||||.|||||||||||.|||||.|||||||||||||||||||||
Sbjct 1829  GTAGGAAGCCTGCTAGCCCTGGGAGGACCCTGCGAAACGGGCGAGGTGGTGAAGCCGAACCCCTGGACCTGTCC  1902

Query 1891  TTGCGGGCAGGGCCGGGAGGCGAGGCCGGGCCTGGGGGTGCCCTCCACCGCTGCCTCTTCTGCCCGTTCGCCAC  1964
            .|.|||||.||.||||||||.|||||||||.|.|||||||||||.||||||||||||||||||||.||.|||||
Sbjct 1903  CTACGGGCGGGCCCGGGAGGTGAGGCCGGGGCAGGGGGTGCCCTTCACCGCTGCCTCTTCTGCCCCTTTGCCAC  1976

Query 1965  TGGAGCCCCAGAGCTCATGGCCTTGCACCTTCAAGTGCACCACAGCCGCCGGGCTAGGGGCCGCCGGCCACCCC  2038
            ||||||.||.|||||||||||||||||.||.|||||.|||||.|||||.||.|||.||||||||||||..||||
Sbjct 1977  TGGAGCTCCTGAGCTCATGGCCTTGCATCTGCAAGTACACCATAGCCGTCGTGCTCGGGGCCGCCGGCAGCCCC  2050

Query 2039  AGGCTGACGCGTCCCCGCCCTATGCCCGAGTACCATCAGGAGAGACCCCTCCCAGTCCTTCGCAGGAAGGGGAG  2112
            ..||.|||.||||.||..||||||.|||.|.||||||||||||||||||||||||||||.|.|..||||.||||
Sbjct 2051  GAGCCGACACGTCTCCAACCTATGTCCGGGCACCATCAGGAGAGACCCCTCCCAGTCCTCCACTAGAAGAGGAG  2124

Query 2113  GAGGGCTCCGGGCTGTCCAGACCCGGAGAGGCAGGGCTGGGGGGGCAAGAACGG  2166
            |...||.|.||||||||.|||.|||||||||||||.||.|||||||||||||||
Sbjct 2125  GGCAGCCCAGGGCTGTCTAGATCCGGAGAGGCAGGTCTTGGGGGGCAAGAACGG  2178