Construct: ORF ccsbBroadEn_08255
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003602.1_s300c1, BRDN0000391026
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF219 (51222)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51222 | ZNF219 | zinc finger protein 219 | NM_001101672.2 | 99.9% | 99.8% | 778C>A |
| 2 | human | 51222 | ZNF219 | zinc finger protein 219 | NM_001102454.1 | 99.9% | 99.8% | 778C>A |
| 3 | human | 51222 | ZNF219 | zinc finger protein 219 | NM_016423.3 | 99.9% | 99.8% | 778C>A |
| 4 | human | 51222 | ZNF219 | zinc finger protein 219 | XM_017021354.1 | 99.9% | 99.8% | 778C>A |
| 5 | human | 51222 | ZNF219 | zinc finger protein 219 | XM_011536825.1 | 95% | 94.7% | 1_97del;102_115del;889C>A |
| 6 | human | 51222 | ZNF219 | zinc finger protein 219 | XM_024449623.1 | 94.2% | 94.1% | 0_1ins123;655C>A |
| 7 | human | 51222 | ZNF219 | zinc finger protein 219 | XM_024449624.1 | 94.2% | 94.1% | 0_1ins123;655C>A |
| 8 | human | 51222 | ZNF219 | zinc finger protein 219 | XM_024449625.1 | 94.2% | 94.1% | 0_1ins123;655C>A |
| 9 | human | 51222 | ZNF219 | zinc finger protein 219 | XM_005267739.1 | 93.9% | 93.6% | 1_124del;129_142del;916C>A |
| 10 | mouse | 69890 | Zfp219 | zinc finger protein 219 | NM_001253694.1 | 82.4% | 87.5% | (many diffs) |
| 11 | mouse | 69890 | Zfp219 | zinc finger protein 219 | NM_001253695.1 | 82.4% | 87.5% | (many diffs) |
| 12 | mouse | 69890 | Zfp219 | zinc finger protein 219 | NM_027248.2 | 82.4% | 87.5% | (many diffs) |
| 13 | mouse | 69890 | Zfp219 | zinc finger protein 219 | XM_006519498.3 | 82.4% | 87.5% | (many diffs) |
| 14 | mouse | 69890 | Zfp219 | zinc finger protein 219 | XM_006519499.3 | 82.4% | 87.5% | (many diffs) |
| 15 | mouse | 69890 | Zfp219 | zinc finger protein 219 | XM_006519501.3 | 82.4% | 87.5% | (many diffs) |
| 16 | mouse | 69890 | Zfp219 | zinc finger protein 219 | XM_006519502.3 | 82.4% | 87.5% | (many diffs) |
| 17 | mouse | 69890 | Zfp219 | zinc finger protein 219 | XM_006519503.2 | 82.4% | 87.5% | (many diffs) |
| 18 | mouse | 69890 | Zfp219 | zinc finger protein 219 | XM_006519504.3 | 82.4% | 87.5% | (many diffs) |
| 19 | mouse | 69890 | Zfp219 | zinc finger protein 219 | XM_006519505.1 | 82.4% | 87.5% | (many diffs) |
| 20 | mouse | 69890 | Zfp219 | zinc finger protein 219 | XM_011245176.2 | 82.4% | 87.5% | (many diffs) |
| 21 | mouse | 69890 | Zfp219 | zinc finger protein 219 | XM_011245177.1 | 82.4% | 87.5% | (many diffs) |
| 22 | mouse | 69890 | Zfp219 | zinc finger protein 219 | XM_017316180.1 | 82.4% | 87.5% | (many diffs) |
| 23 | mouse | 69890 | Zfp219 | zinc finger protein 219 | NM_001253696.1 | 78.2% | 83.3% | (many diffs) |
| 24 | mouse | 69890 | Zfp219 | zinc finger protein 219 | XM_006519506.3 | 78.2% | 83.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2232
- ORF length:
- 2166
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGGCTCACGT CCCCGCGCCC CGAGCGGCCA CTTAGCGCCG TCGCCGCCGG 121 CTTTCGACGG CGAGCTGGAT CTGCAGCGAT ACTCCAACGG GCCAGCCGTG AGCGCAGGGT 181 CGCTCGGGAT GGGAGCGGTG AGCTGGTCTG AGAGTCGTGC AGGCGAACGG CGCTTCCCCT 241 GCCCTGTATG CGGGAAGCGC TTCCGCTTCA ACTCTATCCT TGCTTTGCAC CTGCGGGCGC 301 ACCCAGGAGC CCAGGCCTTC CAGTGCCCTC ACTGCGGCCA CCGCGCGGCG CAGCGGGCTC 361 TGCTGCGCTC GCACCTGCGC ACACACCAGC CCGAGCGCCC ACGTAGTCCT GCTGCACGCC 421 TGTTGCTGGA GTTGGAAGAG CGCGCGCTAC TACGCGAGGC CCGACTGGGG AGAGCCCGAA 481 GCTCAGGGGG CATGCAGGCC ACCCCTGCCA CTGAGGGTCT GGCGCGGCCC CAGGCTCCTT 541 CATCGTCCGC CTTCCGTTGC CCCTACTGCA AAGGCAAGTT TCGCACCTCG GCGGAGCGCG 601 AACGCCACCT GCACATCCTG CATAGGCCCT GGAAGTGCGG CCTGTGCAGT TTCGGCTCCA 661 GCCAGGAGGA GGAGCTGCTG CACCACAGCC TGACGGCCCA CGGGGCTCCC GAGCGTCCCC 721 TGGCGGCCAC CTCCGCTGCG CCTCCGCCTC AGCCTCAGCC TCAGCCTCCA CCCCAGCCCG 781 AACCCAGATC AGTCCCCCAG CCGGAGCCGG AGCCGGAGCC CGAACGTGAG GCAACCCCGA 841 CCACAGCTCC TGCCGCTCCC GAGGAGCCCC CAGCGCCTCC GGAGTTCCGC TGCCAAGTGT 901 GCGGCCAGAG CTTTACACAG TCTTGGTTTC TCAAGGGCCA CATGCGTAAG CACAAGGCCT 961 CCTTCGATCA TGCGTGTCCG GTGTGCGGCC GCTGCTTCAA GGAGCCCTGG TTCCTTAAGA 1021 ACCACATGAA GGTGCACGCC AGCAAGCTGG GCCCACTGCG TGCCCCGGGG CCTGCCTCCG 1081 GGCCTGCCCG CGCCCCCCAG CCTCCTGACC TCGGCCTGCT GGCCTATGAG CCGTTGGGCC 1141 CAGCGCTCCT CTTGGCCCCG GCTCCCACCC CGGCCGAGCG CCGTGAGCCC CCGAGCCTCT 1201 TGGGCTACCT GAGCCTGCGA GCTGGCGAGG GCCGGCCCAA CGGCGAGGGT GCTGAGCCCG 1261 GTCCCGGCCG CAGCTTCGGA GGCTTCCGCC CGCTGTCCTC TGCTCTCCCG GCCCGGGCTC 1321 GCCGGCACCG TGCGGAGGAG CCTGAGGAAG AAGAGGAGGT GGTGGAGGCC GAGGAGGAAA 1381 CCTGGGCCCG GGGCAGGTCG CTGGGCTCTC TGGCTTCCCT GCACCCGCGC CCGGGTGAGG 1441 GACCGGGGCA CTCTGCCTCT GCTGCTGGGG CCCAGGCAAG ATCGACCGCC ACGCAGGAAG 1501 AGAATGGGCT GTTGGTTGGA GGGACCCGGC CTGAAGGGGG CCGGGGCGCC ACCGGCAAGG 1561 ATTGTCCTTT CTGCGGAAAA TCTTTCCGCT CAGCACATCA CCTCAAAGTG CATCTGCGAG 1621 TGCACACAGG CGAGCGGCCC TACAAGTGTC CGCACTGCGA CTACGCGGGC ACCCAGTCCG 1681 GCTCGCTCAA GTATCACCTA CAGCGCCACC ACCGGGAGCA GAGGAGCGGG GCCGGCCCCG 1741 GGCCACCCCC GGAGCCACCG CCTCCTTCCC AGCGGGGTTC GGCCCCGCAA TCTGGAGCCA 1801 AGCCGTCTCC GCAGCCTGCG ACCTGGGTGG AGGGCGCCTC AAGTCCCCGG CCTCCTTCTA 1861 GCGGTGCTGG GCCGGGGTCC CGTCGGAAGC CCGCCAGCCC TGGGAGGACC CTGCGCAACG 1921 GGCGAGGCGG TGAGGCCGAA CCCCTGGACC TGTCCTTGCG GGCAGGGCCG GGAGGCGAGG 1981 CCGGGCCTGG GGGTGCCCTC CACCGCTGCC TCTTCTGCCC GTTCGCCACT GGAGCCCCAG 2041 AGCTCATGGC CTTGCACCTT CAAGTGCACC ACAGCCGCCG GGCTAGGGGC CGCCGGCCAC 2101 CCCAGGCTGA CGCGTCCCCG CCCTATGCCC GAGTACCATC AGGAGAGACC CCTCCCAGTC 2161 CTTCGCAGGA AGGGGAGGAG GGCTCCGGGC TGTCCAGACC CGGAGAGGCA GGGCTGGGGG 2221 GGCAAGAACG GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 2281 caatttgttg caacgaac