Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08255
- Subject:
- NM_001253696.1
- Aligned Length:
- 2188
- Identities:
- 1712
- Gaps:
- 167
Alignment
Query 1 ATGGAGGGCTCACGTCCCCGCGCCCCGAGCGGCCACTTAGCGCCGTCGCCGCCGGCTTTCGACGGCGAGCTGGA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 TCTGCAGCGATACTCCAACGGGCCAGCCGTGAGCGCAGGGTCGCTCGGGATGGGAGCGGTGAGCTGGTCTGAGA 148
||||||||.|||.|.||||||||||
Sbjct 1 -------------------------------------------------ATGGGAGCAGTGGGTTGGTCTGAGA 25
Query 149 GTCGTGCAGGCGAACGGCGCTTCCCCTGCCCTGTATGCGGGAAGCGCTTCCGCTTCAACTCTATCCTTGCTTTG 222
.||||||||||||||||||||||||.||.|||||.|||||.|||||||||||.|||||.||.|||.|.||||||
Sbjct 26 CTCGTGCAGGCGAACGGCGCTTCCCTTGTCCTGTGTGCGGAAAGCGCTTCCGATTCAATTCCATCTTGGCTTTG 99
Query 223 CACCTGCGGGCGCACCCAGGAGCCCAGGCCTTCCAGTGCCCTCACTGCGGCCACCGCGCGGCGCAGCGGGCTCT 296
||||||.|.||.|||||.||.|||||.||||||||||||||.||.||||||||||||||.||||||||||||||
Sbjct 100 CACCTGAGAGCCCACCCGGGCGCCCAAGCCTTCCAGTGCCCACATTGCGGCCACCGCGCAGCGCAGCGGGCTCT 173
Query 297 GCTGCGCTCGCACCTGCGCACACACCAGCCCGAGCGCCCACGTAGTCCTGCTGCACGCCTGTTGCTGGAGTTGG 370
|||||||||.|||||.||.||.||||||||.|||||.|||||.||.|||||||||||.||||||||||||||||
Sbjct 174 GCTGCGCTCACACCTCCGAACGCACCAGCCGGAGCGTCCACGCAGCCCTGCTGCACGGCTGTTGCTGGAGTTGG 247
Query 371 AAGAGCGCGCGCTACTACGCGAGGCCCGACTGGGGAGAGCCCGAAGCTCAGGGGGCATGCAGGCCACCCCTGCC 444
|.||.|||||.||.||.|||||.||||||||.|||||||||.||||||||||.|||||||||.|||.|||||||
Sbjct 248 AGGAACGCGCCCTGCTTCGCGAAGCCCGACTCGGGAGAGCCAGAAGCTCAGGCGGCATGCAGTCCAGCCCTGCC 321
Query 445 ACTGAGGGTCTGGCGCGGCCCCAGGCTCCTTCATCGTCCGCCTTCCGTTGCCCCTACTGCAAAGGCAAGTTTCG 518
.|.|||||.|||||.||.||.||||..|||||.||.||.||||||||||||||.|.||||||||||||||||||
Sbjct 322 GCAGAGGGCCTGGCTCGCCCTCAGGTCCCTTCCTCATCTGCCTTCCGTTGCCCTTTCTGCAAAGGCAAGTTTCG 395
Query 519 CACCTCGGCGGAGCGCGAACGCCACCTGCACATCCTGCATAGGCCCTGGAAGTGCGGCCTGTGCAGTTTCGGCT 592
||||||.||||||||.||||||||||||||.||||||||.|||||||||||||||.||.||||||||||.||||
Sbjct 396 CACCTCAGCGGAGCGGGAACGCCACCTGCATATCCTGCACAGGCCCTGGAAGTGCAGCTTGTGCAGTTTTGGCT 469
Query 593 CCAGCCAGGAGGAGGAGCTGCTGCACCACAGCCTGACGGCCCACGGGGCTCCCGAGCGTCCCCTGGCGGCCACC 666
|||||||||||||||||.|||||||||||||.||||||||||||||||||.|||||||.|||||||||||.||.
Sbjct 470 CCAGCCAGGAGGAGGAGTTGCTGCACCACAGTCTGACGGCCCACGGGGCTTCCGAGCGCCCCCTGGCGGCTACA 543
Query 667 TCCGCTGCGCCTCCGCCTCAGCCTCAGCCTCAGCCTCCACCCCAGCCCGAACCCAGATCAGTCCC-----CC-- 733
| ||..||||.|.||.|.||||||||||||||..|||||||||||.| ||| ||
Sbjct 544 T---------------CTACGCCTGAACCCCCGCCTCCACCCCAGCAAGAACCCAGATCTG-CCCTTGAGCCTG 601
Query 734 AGCCGGAGCCGGA------GCCGGAGCCCGAACGTGAGGCAACCCCGACCACAGCTCCTGCCGCTCCCGAGGAG 801
||||.|||||.|| |||.|||||.||.||.|||||||.|||..||.||.|||||||..||||.||||||
Sbjct 602 AGCCTGAGCCTGAACCTAGGCCAGAGCCTGACCGGGAGGCAAACCCTGCCCCAACTCCTGCACCTCCGGAGGAG 675
Query 802 CCCCCAGCGCCTCCGGAGTTCCGCTGCCAAGTGTGCGGCCAGAGCTTTACACAGTCTTGGTTTCTCAAGGGCCA 875
|||||.|||||.||.||.|||||.|||||.||||||||||||||||||||||||||.||||||||||||||.||
Sbjct 676 CCCCCTGCGCCACCTGAATTCCGTTGCCAGGTGTGCGGCCAGAGCTTTACACAGTCCTGGTTTCTCAAGGGTCA 749
Query 876 CATGCGTAAGCACAAGGCCTCCTTCGATCATGCGTGTCCGGTGTGCGGCCGCTGCTTCAAGGAGCCCTGGTTCC 949
||||||.|||||||||||||||||.|||||||||||.||.||.||.||.|||||||||||||||||||||||||
Sbjct 750 CATGCGCAAGCACAAGGCCTCCTTTGATCATGCGTGCCCCGTATGTGGTCGCTGCTTCAAGGAGCCCTGGTTCC 823
Query 950 TTAAGAACCACATGAAGGTGCACGCCAGCAAGCTGGGCCCACTGCGTGCCCCGGGGCCTGCCTCCGGGCCTGCC 1023
|||||||||||||||||||||||.|||||||||||||.||..|||||||.||.||.||||.|||.|..||||||
Sbjct 824 TTAAGAACCACATGAAGGTGCACACCAGCAAGCTGGGTCCTTTGCGTGCTCCAGGCCCTGGCTCTGCACCTGCC 897
Query 1024 CGCGCCCCCCAGCCTCCTGACCTCGGCCTGCTGGCCTATGAGCCGTTGGGCCCAGCGCTCCTCTTGGCCCCGGC 1097
.|.|||||.||||||||.|||||..||||.|||||.||||||||..|||||||.||.||||||.|||||||.||
Sbjct 898 AGGGCCCCTCAGCCTCCCGACCTGAGCCTACTGGCATATGAGCCACTGGGCCCTGCACTCCTCCTGGCCCCAGC 971
Query 1098 TCCCACCCCGGCCGAGCGCCGTGAGCCCCCGAGCCTCTTGGGCTACCTGAGCCTGCGAGCTGGCGAGGGCCGGC 1171
.|||.|.|||||.||||||||.||||||||.||||||||.|||||||||||..|.||||||||.||.|..||.|
Sbjct 972 ACCCGCTCCGGCTGAGCGCCGAGAGCCCCCAAGCCTCTTAGGCTACCTGAGTGTACGAGCTGGGGAAGTACGAC 1045
Query 1172 CCAACGGCGAGGGTGCTGAGCCC----GGTCCCGGCCGCAGCTTCGGAGGCTTCCGCCCGCTGTCCTCTGCTCT 1241
||||.||.||||||||||| ||| ||| |||||.||||..|||||.||||||||.|||.|.||.|||||
Sbjct 1046 CCAATGGTGAGGGTGCTGA-CCCTGGAGGT---GGCCGAAGCTATGGAGGGTTCCGCCCACTGCCTTCAGCTCT 1115
Query 1242 CCCGGCCCGGGCTCGCCGGCACCGTGCGGAGGAGCCTGAGGAAGAAGAGGAGGTGGTGGAGGCCGAGGAGGAAA 1315
.||...|||||||||.||.||||||.|.|||||.||.||.||.|||||.||.|||||||||||.||.|||||.|
Sbjct 1116 TCCCAACCGGGCTCGGCGACACCGTACAGAGGAACCAGAAGAGGAAGAAGAAGTGGTGGAGGCTGAAGAGGAGA 1189
Query 1316 CCTGGGCCCGGGGCAGGTCGCTGGGCTCTCTGGCTTCCCTGCACCCGCGCCCGGGTGAGGGACCGGGGCACTCT 1389
.|||||||||.|||||||||||||||||||||.|||||||||||||...|||.||||||||..|.||.||..||
Sbjct 1190 GCTGGGCCCGAGGCAGGTCGCTGGGCTCTCTGACTTCCCTGCACCCCAACCCAGGTGAGGGGTCAGGACAGCCT 1263
Query 1390 GCCTCTGCTGCTGGGGCCCAGGCAAGATCGACCGCCACGCAGGAAGAGAATGGGCTGTTGGTTGGAGGGACCCG 1463
||..||||.||.|||.|||||||.|||||.||.|||||.||.|||||.||.||||||.|||||||||||||.||
Sbjct 1264 GCACCTGCCGCGGGGACCCAGGCGAGATCCACGGCCACCCAAGAAGAAAACGGGCTGCTGGTTGGAGGGACACG 1337
Query 1464 GCCTGAAGGGGGCCGGGGCGCCACCGGCAAGGATTGTCCTTTCTGCGGAAAATCTTTCCGCTCAGCACATCACC 1537
..||||||.||||||.||.|||||.||||||||.||.||.|||||.|||||||||||||||||.||.||||||.
Sbjct 1338 ATCTGAAGCGGGCCGTGGGGCCACTGGCAAGGACTGCCCCTTCTGTGGAAAATCTTTCCGCTCGGCGCATCACT 1411
Query 1538 TCAAAGTGCATCTGCGAGTGCACACAGGCGAGCGGCCCTACAAGTGTCCGCACTGCGACTACGCGGGCACCCAG 1611
|.|||||||||||.||.|||||||||||.|||||.||||||||||||||.|||||||||||.||.||.||||||
Sbjct 1412 TAAAAGTGCATCTCCGTGTGCACACAGGTGAGCGTCCCTACAAGTGTCCACACTGCGACTATGCAGGTACCCAG 1485
Query 1612 TCCGGCTCGCTCAAGTATCACCTACAGCGCCACCACCGGGAGCAGAGGAGCGGGGCCGGCCCCGGGCCACCCCC 1685
||.||||||||||||||||||||.|||||.||||||||.||||||||||||.|.||.||.||.|||||.|||||
Sbjct 1486 TCGGGCTCGCTCAAGTATCACCTTCAGCGTCACCACCGAGAGCAGAGGAGCAGTGCGGGTCCTGGGCCTCCCCC 1559
Query 1686 GGAGCCACCGCCTCCTTCCCAGCGGGGTTC---GGCCCCGCAATCTGGAGCCAAGCCGTCTCCGCAGCCT--GC 1754
.||.||.|||||.||||||||||||||.|| |...|||||.||.|||||||||||..|||.| |||| ||
Sbjct 1560 AGAACCCCCGCCACCTTCCCAGCGGGGCTCACTGCAGCCGCAGTCAGGAGCCAAGCCAACTCAG--GCCTCAGC 1631
Query 1755 GACCTGGGTGGAGGGCGCCTCAAGTCCCCGGCCTCCTTCTAGCGGTGCTGGGCCGGGGTCCCGTCGGAAGCCCG 1828
.||||||||.||||||.|..|||||.|||||||||||||.|||.|..|.||.||.|||||||||.|||||||.|
Sbjct 1632 CACCTGGGTAGAGGGCACTGCAAGTACCCGGCCTCCTTCGAGCAGCACCGGACCAGGGTCCCGTAGGAAGCCTG 1705
Query 1829 CCAGCCCTGGGAGGACCCTGCGCAACGGGCGAGGCGGTGAGGCCGAACCCCTGGACCTGTCCTTGCGGGCAGGG 1902
|.||||||||||||||||||||.|||||||||||.|||||.|||||||||||||||||||||.|.|||||.||.
Sbjct 1706 CTAGCCCTGGGAGGACCCTGCGAAACGGGCGAGGTGGTGAAGCCGAACCCCTGGACCTGTCCCTACGGGCGGGC 1779
Query 1903 CCGGGAGGCGAGGCCGGGCCTGGGGGTGCCCTCCACCGCTGCCTCTTCTGCCCGTTCGCCACTGGAGCCCCAGA 1976
||||||||.|||||||||.|.|||||||||||.||||||||||||||||||||.||.|||||||||||.||.||
Sbjct 1780 CCGGGAGGTGAGGCCGGGGCAGGGGGTGCCCTTCACCGCTGCCTCTTCTGCCCCTTTGCCACTGGAGCTCCTGA 1853
Query 1977 GCTCATGGCCTTGCACCTTCAAGTGCACCACAGCCGCCGGGCTAGGGGCCGCCGGCCACCCCAGGCTGACGCGT 2050
|||||||||||||||.||.|||||.|||||.|||||.||.|||.||||||||||||..||||..||.|||.|||
Sbjct 1854 GCTCATGGCCTTGCATCTGCAAGTACACCATAGCCGTCGTGCTCGGGGCCGCCGGCAGCCCCGAGCCGACACGT 1927
Query 2051 CCCCGCCCTATGCCCGAGTACCATCAGGAGAGACCCCTCCCAGTCCTTCGCAGGAAGGGGAGGAGGGCTCCGGG 2124
|.||..||||||.|||.|.||||||||||||||||||||||||||||.|.|..||||.|||||...||.|.|||
Sbjct 1928 CTCCAACCTATGTCCGGGCACCATCAGGAGAGACCCCTCCCAGTCCTCCACTAGAAGAGGAGGGCAGCCCAGGG 2001
Query 2125 CTGTCCAGACCCGGAGAGGCAGGGCTGGGGGGGCAAGAACGG 2166
|||||.|||.|||||||||||||.||.|||||||||||||||
Sbjct 2002 CTGTCTAGATCCGGAGAGGCAGGTCTTGGGGGGCAAGAACGG 2043