Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08342
- Subject:
- NM_001252498.1
- Aligned Length:
- 4512
- Identities:
- 1169
- Gaps:
- 3213
Alignment
Query 1 ATGAACTCACCCGTGGACCCTGGCGCTAGGCAGGCGTTGAGGAAGAAGCCACCCGAGCGGACTCCCGAGGACTT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 AAATACTATTTATTCTTATCTTCATGGAATGGAAATATTATCAAATCTCAGGGAACATCAGCTTAGATTAATGT 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CTGCAAGAGCACGCTATGAGAGATACAGTGGCAATCAGGTTCTCTTTTGTTCAGAAACGATTGCCAGATGTTGG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TATATCCTACTTTCTGGATCTGTGCTTGTAAAAGGCTCCATGGTCTTGCCTCCTTGCAGTTTTGGTAAGCAGTT 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 TGGAGGAAAAAGAGGATGTGATTGTCTTGTATTAGAGCCTTCAGAAATGATTGTGGTAGAGAATGCCAAAGATA 370
||| |.||.||||| ||.|| ||| .|.||||
Sbjct 1 ---------------ATG-GCTTTTCTTG--TTCGA---------------TGT-------TACGCCA------ 28
Query 371 ATGAAGATAGTATTCTACAAAGAGAAATTCCTGCCAGACAATCCCGAAGAAGATTTCGGAAAATTAACTATAAA 444
||.||.|||..|.|.|.| |||
Sbjct 29 ------ATTGTCTTCAGCCATGGG-----CCT------------------------------------------ 49
Query 445 GGAGAGCGCCAAACCATTACTGATGATGTGGAGGTTAACAGCTATCTTTCTCTTCCAGCTGATCTTACCAAGAT 518
||||| |||||||||||||||||||||||
Sbjct 50 --------CCAAA--------------------------------------CTTCCAGCTGATCTTACCAAGAT 77
Query 519 GCATCTCACAGAAAACCCTCATCCACAGGTGACTCATGTGTCTTCTAGTCAGTCTGGTTGTAGCATTGCCAGTG 592
|||.||||||||.||||||||||||||||||||.|||||||||||||||||||||||.||||||||||||||||
Sbjct 78 GCACCTCACAGACAACCCTCATCCACAGGTGACGCATGTGTCTTCTAGTCAGTCTGGCTGTAGCATTGCCAGTG 151
Query 593 ACTCTGGAAGCAGCAGTTTATCTGATATCTATCAGGCTACGGAGAGTGAGGTAGGAGATGTAGATTTGACACGT 666
|||||||.||||||||||||||.|||||||||||||||||.||||||||.|||||||||||||||||.|||||.
Sbjct 152 ACTCTGGGAGCAGCAGTTTATCCGATATCTATCAGGCTACAGAGAGTGAAGTAGGAGATGTAGATTTAACACGC 225
Query 667 CTTCCAGAAGGACCTGTTGATTCTGAGGATGACGAAGAGGAAGATGAAGAGATTGATCGAACAGATCCATTGCA 740
||||||||||||||||||||||||||||||||.||.|||||.||.||||||||||||.|||||||||||.||||
Sbjct 226 CTTCCAGAAGGACCTGTTGATTCTGAGGATGAAGAGGAGGAGGAAGAAGAGATTGATAGAACAGATCCACTGCA 299
Query 741 GGGGCGAGATCTTGTTCGAGAATGTCTTGAAAAAGAACCTGCAGACAAAACTGATGATGACATTGAACAATTGC 814
|||.||||||||||||||.||.|||||||||||.|||||.||||||||||||||||||||..|||||||.||.|
Sbjct 300 GGGTCGAGATCTTGTTCGGGAGTGTCTTGAAAAGGAACCCGCAGACAAAACTGATGATGATGTTGAACAGTTAC 373
Query 815 TGGAGTTTATGCACCAGCTCCCTGCATTTGCAAACATGACCATGTCTGTAAGGAGAGAACTCTGCTCAGTGATG 888
|.|||||.|||||||||||.|||||.|||||.|||||||||||||||||||||||||||||||||||.||.|||
Sbjct 374 TTGAGTTCATGCACCAGCTGCCTGCCTTTGCGAACATGACCATGTCTGTAAGGAGAGAACTCTGCTCCGTCATG 447
Query 889 ATTTTTGAAGTGGTAGAGCAGGCTGGAGCTATTATTCTTGAAGATGGGCAAGAGCTTGACTCATGGTATGTTAT 962
.||||||||||.||||||||||||||.|||.||||||||||||||||||||||||||||||||||||||||.||
Sbjct 448 GTTTTTGAAGTAGTAGAGCAGGCTGGGGCTGTTATTCTTGAAGATGGGCAAGAGCTTGACTCATGGTATGTCAT 521
Query 963 TTTAAACGGCACTGTGGAAATCAGTCATCCAGATGGAAAAGTTGAAAATTTGTTTATGGGAAATAGTTTTGGAA 1036
||||||.||||||||.|||||.||||||||||||||.|||.|.||||||.|.||.|||||||||||||||||.|
Sbjct 522 TTTAAATGGCACTGTAGAAATTAGTCATCCAGATGGGAAAATAGAAAATCTCTTCATGGGAAATAGTTTTGGGA 595
Query 1037 TTACTCCCACTCTGGATAAGCAGTACATGCATGGAATTGTCAGGACTAAAGTAGATGATTGTCAGTTTGTCTGC 1110
||...|||||.||||||||||||.|||||||||||..|||||||||.|||||.|||||||||||||||||||||
Sbjct 596 TTGTCCCCACGCTGGATAAGCAGCACATGCATGGAGCTGTCAGGACCAAAGTCGATGATTGTCAGTTTGTCTGC 669
Query 1111 ATAGCCCAGCAAGATTATTGGAGAATTTTAAACCATGTGGAAAAAAATACCCATAAAGTTGAGGAAGAGGGAGA 1184
|||||.||.|||||.|||||||||||||||||.|||||||||||||||||.||.||||||||||||||||||||
Sbjct 670 ATAGCTCAACAAGACTATTGGAGAATTTTAAATCATGTGGAAAAAAATACTCACAAAGTTGAGGAAGAGGGAGA 743
Query 1185 AATTGTTATGGTACATGAGCATCGGGAACTAGACCGGAGTGGAACCAGGAAAGGACACATTGTGATCAAGGCAA 1258
.|||||.||||||||||||||.||.||.|||||||||||.|||||||||||||||||||||||.||||||||||
Sbjct 744 GATTGTCATGGTACATGAGCACCGTGAGCTAGACCGGAGCGGAACCAGGAAAGGACACATTGTAATCAAGGCAA 817
Query 1259 CACCTGAGCGTCTCATAATGCATTTAATAGAAGAACATTCCATCGTGGATCCAACTTATATAGAAGATTTTCTA 1332
||||||||||||||||.||||||||.||||||||||||||.||.|||||.|||||.||.|||||||||||.||.
Sbjct 818 CACCTGAGCGTCTCATCATGCATTTGATAGAAGAACATTCTATTGTGGACCCAACATACATAGAAGATTTCCTC 891
Query 1333 TTAACTTACAGGACATTTCTTGAAAGTCCTTTGGATGTTGGGATCAAACTATTGGAATGGTTTAAGATCGACAG 1406
|||||||||||||||||||||||||.|||||||||||||||||||||.||.|||||||||||||||||.||||.
Sbjct 892 TTAACTTACAGGACATTTCTTGAAACTCCTTTGGATGTTGGGATCAAGCTTTTGGAATGGTTTAAGATTGACAA 965
Query 1407 CTTAAGAGATAAGGTGACACGGATTGTATTATTATGGGTAAATAATCATTTTAATGATTTTGAAGGTGACCCTG 1480
|.||||.|||||||||||||||||||||.|.||||||||||||||||||||||||||||||||||||||.||||
Sbjct 966 CCTAAGGGATAAGGTGACACGGATTGTACTCTTATGGGTAAATAATCATTTTAATGATTTTGAAGGTGATCCTG 1039
Query 1481 CTATGACTCGATTTCTAGAGGAATTTGAAAAAAATCTGGAAGATACAAAGATGAATGGTCATCTCCGGTTATTG 1554
|||||||||.|||||||||.||||||||||.||||.|||||||||||||.|||||||||||.|||.||||||||
Sbjct 1040 CTATGACTCAATTTCTAGAAGAATTTGAAAGAAATTTGGAAGATACAAAAATGAATGGTCACCTCAGGTTATTG 1113
Query 1555 AATATTGCCTGTGCTGCAAAGGCTAAGTGGAGACAGGTTGTGCTGCAAAAGGCTTCCCGCGAGTCCCCTCTACA 1628
||||||||||||||||||||||||||||||||.||.|||||.|||||.|||||.|||||.||||||||.||.||
Sbjct 1114 AATATTGCCTGTGCTGCAAAGGCTAAGTGGAGGCAAGTTGTACTGCAGAAGGCGTCCCGTGAGTCCCCGCTGCA 1187
Query 1629 ATTCAGCCTTAATGGAGGGAGTGAGAAGGGATTTGGTATTTTTGTTGAAGGAGTAGAACCTGGTAGCAAAGCTG 1702
.|||.||||||.|||.||.|||||||||||||||||..|.||||||||||.|||||||.|||||||||||||||
Sbjct 1188 CTTCTGCCTTACTGGGGGCAGTGAGAAGGGATTTGGAGTCTTTGTTGAAGAAGTAGAATCTGGTAGCAAAGCTG 1261
Query 1703 CTGATTCAGGACTGAAACGTGGTGATCAGATTATGGAAGTAAATGGACAAAACTTTGAGAATATTACATTTATG 1776
||||..|||||||||||.|.||||||||| |.|||||||
Sbjct 1262 CTGACGCAGGACTGAAAAGGGGTGATCAG-----GTAAGTAAA------------------------------- 1299
Query 1777 AAAGCCGTTGAAATTTTGAGGAATAATACTCATCTTGCACTTACTGTGAAGACCAACATTTTTGTGTTCAAAGA 1850
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 1851 GTTACTTTTTAGGACTGAACAAGAGAAATCTGGTGTTCCTCATATTCCCAAAATTGCTGAAAAAAAAAGTAATC 1924
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 1925 GCCATTCTATCCAGCATGTGCCAGGAGATATTGAACAGACATCACAGGAGAAAGGAAGTAAGAAAGTTAAAGCA 1998
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 1999 AATACTGTTTCAGGTGGAAGAAACAAAATCAGGAAGATTTTGGATAAAACACGATTTAGTATCTTGCCTCCAAA 2072
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 2073 GCTATTTAGTGATGGAGGCCTAAGCCAATCACAAGATGACAGCATTGTGGGAACAAGGCACTGTAGGCATAGTC 2146
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 2147 TGGCTATAATGCCCATCCCTGGAACACTCTCATCCAGCAGCCCTGATCTCCTGCAGCCTACCACCAGTATGTTG 2220
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 2221 GATTTTTCCAATCCTTCAGATATCCCTGATCAAGTTATAAGAGTTTTCAAAGTGGATCAGCAAAGTTGCTACAT 2294
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 2295 TATCATCAGTAAAGACACCACAGCTAAAGAAGTAGTTTTTCATGCTGTTCATGAATTTGGTTTGACCGGTGCAT 2368
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 2369 CCGACACATATTCTCTCTGTGAAGTTTCTGTTACTCCTGAGGGTGTCATAAAACAGAGAAGACTTCCAGATCAG 2442
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 2443 TTCTCCAAATTAGCTGATAGAATTCAACTCAATGGAAGGTATTACTTAAAAAATAACATGGAAACAGAAACCTT 2516
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 2517 ATGTTCAGATGAAGATGCTCAAGAACTAGTTAAGGAAAGCCAGCTATCCATGCTGCAGCTCAGTACCATTGAGG 2590
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 2591 TGGCCACCCAGCTGTCAATGAGGGACTTTGATTTGTTTCGTAATATTGAACCGACTGAGTACATCGATGACCTT 2664
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 2665 TTTAAGTTAAATTCCAAAACAGGAAATACTCATTTGAAGAGGTTTGAGGACATTGTAAACCAAGAGACATTCTG 2738
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 2739 GGTTGCCTCAGAAATTTTAACTGAAGCAAATCAGCTCAAACGAATGAAGATTATTAAGCATTTTATTAAAATTG 2812
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 2813 CACTTCATTGTCGAGAATGTAAGAACTTCAATTCCATGTTTGCAATAATAAGTGGCTTGAACCTGGCATCTGTA 2886
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 2887 GCAAGACTCAGAGGAACTTGGGAAAAGTTACCAAGCAAATACGAGAAACATCTTCAAGATCTACAAGACATTTT 2960
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 2961 TGATCCATCTAGAAACATGGCAAAGTATAGAAATATTCTTAGTAGTCAAAGTATGCAGCCTCCAATTATTCCAC 3034
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 3035 TCTTCCCTGTTGTCAAGAAAGATATGACATTTCTACATGAAGGAAATGACTCCAAAGTAGATGGTTTAGTAAAC 3108
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 3109 TTTGAGAAGTTAAGAATGATTTCCAAGGAAATCCGCCAAGTTGTTCGAATGACTTCTGCTAACATGGACCCAGC 3182
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 3183 TATGATGTTTCGACAGAGGAAGAAGAGGTGGCGGAGTCTGGGGTCACTGAGTCAAGGAAGCACAAATTCAAACA 3256
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 3257 TGCTGGATGTTCAGGGAGGTGCTCACAAAAAAAGGGCACGCCGCAGCTCTCTGCTTAATGCCAAGAAGCTATAT 3330
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 3331 GAGGATGCCCAAATGGCAAGGAAGGTGAAGCAGTATCTTTCCAGTCTCGATGTAGAGACAGATGAGGAGAAGTT 3404
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 3405 CCAGATGATGTCATTACAGTGGGAGCCTGCATATGGTACCTTGACCAAGAATTTAAGTGAGAAAAGATCAGCCA 3478
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 3479 AATCATCTGAAATGTCTCCAGTGCCTATGAGGTCAGCTGGCCAAACAACTAAAGCCCACTTGCATCAACCCCAC 3552
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 3553 AGAGTAAGCCAGGTGCTTCAGGTGCCAGCTGTTAATTTGCACCCCATCAGGAAGAAGGGACAAACAAAAGACCC 3626
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 3627 TGCACTGAATACAAGTTTACCTCAGAAAGTTTTAGGAACAACTGAAGAAATAAGTGGTAAGAAGCATACAGAAG 3700
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 3701 ACACTATTTCTGTGGCGTCATCTTTACATTCTAGTCCTCCTGCATCTCCTCAAGGCTCCCCTCACAAAGGTTAC 3774
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 3775 ACACTTATTCCATCAGCTAAATCTGACAACTTGTCTGACTCCAGCCATAGTGAGATTTCTTCACGGTCCAGCAT 3848
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 3849 CGTGAGCAATTGTTCTGTTGACTCCATGTCTGCAGCTCTACAGGATGAACGGTGTTCCTCTCAGGCCCTGGCAG 3922
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 3923 TCCCTGAATCCACTGGGGCATTGGAAAAGACAGAGCACGCTTCAGGGATAGGAGATCATAGTCAACATGGCCCT 3996
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 3997 GGGTGGACACTCTTGAAGCCATCTCTAATCAAGTGTTTAGCTGTCTCATCGTCTGTGAGCAATGAAGAGATTTC 4070
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 4071 TCAAGAGCATATCATTATAGAAGCAGCTGACAGTGGTCGTGGAAGTTGGACTTCGTGTTCAAGCAGCTCCCATG 4144
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 4145 ACAACTTCCAAAGCCTTCCAAACCCAAAAAGCTGGGATTTTTTGAACTCTTACAGACATACCCATTTGGATGAC 4218
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 4219 CCCATTGCTGAAGTTGAACCCACTGACTCTGAGCCCTATTCCTGTTCTAAAAGCTGCTCTAGAACTTGTGGGCA 4292
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 4293 GTGTAAAGGAAGCCTAGAGAGAAAGAGTTGGACCTCCTCCAGTTCTCTGTCTGACACGTATGAACCAAACTATG 4366
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 4367 GGACAGTTAAACAGAGAGTATTGGAGAGCACCCCAGCTGAGTCATCTGAAGGCTTGGACCCCAAGGATGCCACT 4440
Sbjct 1300 -------------------------------------------------------------------------- 1299
Query 4441 GACCCAGTTTATAAAACTGTCACTTCAAGTACAGAAAAGGGCTTGATTGAAAATGAACAAGTTTCAGCAGTC 4512
Sbjct 1300 ------------------------------------------------------------------------ 1299
