Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08479
- Subject:
- XR_946691.2
- Aligned Length:
- 3897
- Identities:
- 2199
- Gaps:
- 1655
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACAGGTTGTGAGCCAGTGACTTGTCTCAGTAGCTGAAACTGCAGCCCTGACTCCAGCTAATGCGATTTCTGGTC 74
Query 1 -------------------------------------------------------ATGGCTTCCTCCAACCCTC 19
|||||||||||||||||||
Sbjct 75 TTCTTTCCACAGGTGTGTAGCTGGGACGGTGCTGGTCTGAGCTGGACCTTGTCTGATGGCTTCCTCCAACCCTC 148
Query 20 CTCCACAGCCTGCCATAGGAGATCAGCTGGTTCCAGGAGTCCCAGGCCCCTCCTCTGAGGCAGAGGACGACCCA 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CTCCACAGCCTGCCATAGGAGATCAGCTGGTTCCAGGAGTCCCAGGCCCCTCCTCTGAGGCAGAGGACGACCCA 222
Query 94 GGAGAGGCGTTTGAGTTTGATGACAGTGATGATGAAGAGGACACCAGCGCAGCCCTGGGCGTCCCCAGCCTTGC 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGAGAGGCGTTTGAGTTTGATGACAGTGATGATGAAGAGGACACCAGCGCAGCCCTGGGCGTCCCCAGCCTTGC 296
Query 168 TCCTGAGAGGGACACAGACCCCCCACTGATCCACTTGGACTCCATCCCTGTCACTGACCCAGACCCAGCAGCTG 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCCTGAGAGGGACACAGACCCCCCACTGATCCACTTGGACTCCATCCCTGTCACTGACCCAGACCCAGCAGCTG 370
Query 242 CTCCACCCGGCACAGGGGTGCCAGCCTGGGTGAGCAATGGGGATGCAGCGGACGCAGCCTTCTCCGGGGCCCGG 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTCCACCCGGCACAGGGGTGCCAGCCTGGGTGAGCAATGGGGATGCAGCGGACGCAGCCTTCTCCGGGGCCCGG 444
Query 316 CACTCCAGCTGGAAGCGGAAGAGTTCCCGTCGCATTGACCGGTTCACTTTCCCCGCCCTGGAAGAGGATGTGAT 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CACTCCAGCTGGAAGCGGAAGAGTTCCCGTCGCATTGACCGGTTCACTTTCCCCGCCCTGGAAGAGGATGTGAT 518
Query 390 TTATGACGACGTCCCCTGCGAGAGCCCAGATGCGCATCAGCCC---GGGGCAGAGAGGAACCTGCTCTACGAGG 460
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 519 TTATGACGACGTCCCCTGCGAGAGCCCAGATGCGCATCAGCCCGCAGGGGCAGAGAGGAACCTGCTCTACGAGG 592
Query 461 ATGCGCACCGGGCTGGGGCCCCTCGGCAGGCGGAGGACCTAGGCTGGAGCTCCAGTGAGTTCGAGAGCTACAGC 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATGCGCACCGGGCTGGGGCCCCTCGGCAGGCGGAGGACCTAGGCTGGAGCTCCAGTGAGTTCGAGAGCTACAGC 666
Query 535 GAGGACTCGGGGGAGGAGGCCAAGCCGGAGGTCGAGGTCGAGCCCGCCAAGCACCGAGTGTCCTTCCAGCCCAA 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAGGACTCGGGGGAGGAGGCCAAGCCGGAGGTCGAGGTCGAGCCCGCCAAGCACCGAGTGTCCTTCCAGCCCAA 740
Query 609 GATGACCCAGCTCATGAAGGCCGCCAAGAGCGGGACCAAGGATGGGCTGGAGAAGACACGGATGGCCGTGATGC 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GATGACCCAGCTCATGAAGGCCGCCAAGAGCGGGACCAAGGATGGGCTGGAGAAGACACGGATGGCCGTGATGC 814
Query 683 GCAAAGTCTCCTTCCTGCACAGGAAGGACGTCCTC---------GGTGACTCGGAGGAGGAGGACATGGGGCTC 747
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 815 GCAAAGTCTCCTTCCTGCACAGGAAGGACGTCCTCGACTTTCCAGGTGACTCGGAGGAGGAGGACATGGGGCTC 888
Query 748 CTGGAGGTCAGCGTTTCGGACATCAAGCCCCCAGCCCCAGAGCTGGGCCCCATGCCAGAGGGCCTGAGCCCTCA 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTGGAGGTCAGCGTTTCGGACATCAAGCCCCCAGCCCCAGAGCTGGGCCCCATGCCAGAGGGCCTGAGCCCTCA 962
Query 822 GCAGGTGGTCCGGAGGCATATCCTGGGCTCCATCGTGCAGAGCGAAGGCAGCTACGTGGAGTCTCTGAAGCGGA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GCAGGTGGTCCGGAGGCATATCCTGGGCTCCATCGTGCAGAGCGAAGGCAGCTACGTGGAGTCTCTGAAGCGGA 1036
Query 896 TACTCCAGGACTACCGCAACCCCCTGATGGAGATGGAGCCCAAGGCGCTGAGCGCCCGCAAGTGCCAGGTGGTG 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TACTCCAGGACTACCGCAACCCCCTGATGGAGATGGAGCCCAAGGCGCTGAGCGCCCGCAAGTGCCAGGTGGTG 1110
Query 970 TTCTTCCGCGTGAAGGAGATCCTGCACTGCCACTCCATGTTCCAGATCGCCCTGTCCTCCCGCGTGGCTGAGTG 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TTCTTCCGCGTGAAGGAGATCCTGCACTGCCACTCCATGTTCCAGATCGCCCTGTCCTCCCGCGTGGCTGAGTG 1184
Query 1044 GGATTCCACCGAGAAGATCGGGGACCTCTTCGTGGCCTCGTTTTCCAAGTCCATGGTGCTAGATGTGTACAGTG 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GGATTCCACCGAGAAGATCGGGGACCTCTTCGTGGCCTCGTTTTCCAAGTCCATGGTGCTAGATGTGTACAGTG 1258
Query 1118 ACTACGTGAACAACTTCACCAGTGCCATGTCCATCATCAAGAAGGCCTGCCTCACCAAGCCTGCCTTCCTCGAG 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACTACGTGAACAACTTCACCAGTGCCATGTCCATCATCAAGAAGGCCTGCCTCACCAAGCCTGCCTTCCTCGAG 1332
Query 1192 TTCCTCAAGCGACGGCAGGTGTGCAGCCCAGACCGTGTCACCCTCTACGGGCTGATGGTCAAGCCCATCCAGAG 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TTCCTCAAGCGACGGCAGGTGTGCAGCCCAGACCGTGTCACCCTCTACGGGCTGATGGTCAAGCCCATCCAGAG 1406
Query 1266 GTTCCCACAGTTCATACTCCTGCTTCAGGACATGCTGAAGAACACCCCCAGGGGCCATCCGGACAGGCTGTCGC 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GTTCCCACAGTTCATACTCCTGCTTCAGGACATGCTGAAGAACACCCCCAGGGGCCATCCGGACAGGCTGTCGC 1480
Query 1340 TGCAGCTGGCCCTCACAGAGCTGGAGACGCTGGCTGAGAAGCTGAACGAGCAGAAGCGGCTGGCTGACCAGGTG 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TGCAGCTGGCCCTCACAGAGCTGGAGACGCTGGCTGAGAAGCTGAACGAGCAGAAGCGGCTGGCTGACCAGGTG 1554
Query 1414 GCTGAGATCCAGCAGCTGACCAAGAGCGTCAGTGACCGCAGCAGCCTCAACAAGCTGTTGACCTCAGGCCAGCG 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GCTGAGATCCAGCAGCTGACCAAGAGCGTCAGTGACCGCAGCAGCCTCAACAAGCTGTTGACCTCAGGCCAGCG 1628
Query 1488 GCAGCTGCTCCTGTGTGAGACGTTGACGGAGACCGTGTACGGTGACCGCGGGCAGCTAATTAAGTCCAAGGAGC 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GCAGCTGCTCCTGTGTGAGACGTTGACGGAGACCGTGTACGGTGACCGCGGGCAGCTAATTAAGTCCAAGGAGC 1702
Query 1562 GTCGGGTCTTCCTGCTCAACGACATGCTTGTCTGTGCCAACATCAACTTCAAGCCTGCCAACCACAGGGGCCAG 1635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GTCGGGTCTTCCTGCTCAACGACATGCTTGTCTGTGCCAACATCAACTTCAAGCCTGCCAACCACAGGGGCCAG 1776
Query 1636 CTGGAGATCAGCAGCCTGGTGCCCCTGGGGCCCAAGTATGTGGTGAAGTGGAACACGGCGCTGCCCCAGGTGCA 1709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CTGGAGATCAGCAGCCTGGTGCCCCTGGGGCCCAAGTATGTGGTGAAGTGGAACACGGCGCTGCCCCAGGTGCA 1850
Query 1710 GGTGGTGGAGGTGGGCCAGGACGGTGGCACCTATGACAAGGACAATGTGCTCATCCAGCACTCAGGCGCCAAGA 1783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GGTGGTGGAGGTGGGCCAGGACGGTGGCACCTATGACAAGGACAATGTGCTCATCCAGCACTCAGGCGCCAAGA 1924
Query 1784 AGGCCTCTGCCTCAGGGCAGGCTCAGAATAAGGTGTACCTCGGCCCCCCACGCCTCTTCCAGGAGCTGCAGGAC 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 AGGCCTCTGCCTCAGGGCAGGCTCAGAATAAGGTGTACCTCGGCCCCCCACGCCTCTTCCAGGAGCTGCAGGAC 1998
Query 1858 CTGCAGAAGGACCTGGCCGTGGTGGAGCAGATCACGCTTCTCATCAGCACGCTGCACGGCACCTACCAGAACCT 1931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 CTGCAGAAGGACCTGGCCGTGGTGGAGCAGATCACGCTTCTCATCAGCACGCTGCACGGCACCTACCAGAACCT 2072
Query 1932 GAACATGACTGTGGCTCAAGACTGGTGCCTGGCCCTGCAGAGGCTGATGCGGGTGAAGGAGGAAGAGATCCACT 2005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 GAACATGACTGTGGCTCAAGACTGGTGCCTGGCCCTGCAGAGGCTGATGCGGGTGAAGGAGGAAGAGATCCACT 2146
Query 2006 CGGCCAACAAGTGCCGTCTCAGGCTCCTGCTTCCTGGGAAACCCGACAAGTCCGGCCGCCCCATTAGCTTCATG 2079
|||||||||||||||||||||||||||||||||||||||||||||||||.|..|| |.|
Sbjct 2147 CGGCCAACAAGTGCCGTCTCAGGCTCCTGCTTCCTGGGAAACCCGACAAATGAGG----------------AAG 2204
Query 2080 GTGGTTTTCATCACCCCCAACCCCCTGAGCAAGATTTCCTGGGTCAACAGGTTACATTTGGCCAAAATCG-GAC 2152
|||....|| |||.||.|.|| |.|||.|..| |||| |.|||| ||
Sbjct 2205 GTGAGGCTC----------------------AGAGTTTCAGG----AGAGGCTGAA---GGCC-ACATCGTGA- 2247
Query 2153 TCCGGGAGGAGAACCAGCCAG-GCTGGCTATGCCCGGATGAG-------------GACAAGAAGAG----CAAA 2208
|||| ||| ||||| |.||.|||||| ||||.|.| || |.||
Sbjct 2248 --------GAGA------CAGAGCTGG----GTCCTGATGAGAGGCACGTGGTCAGACATGTA-AGGTGTCTAA 2302
Query 2209 GCCCCATTCTGG-----TGCCCGATCCTGGCCTGCTGCA-TCCCTGCCT------TCTCCTCCCGGGCACTCAG 2270
|.|| |.||| ||.||| |||.||.|.||.| ||.|.|||| .|| ||.||||||||..||
Sbjct 2303 GACC---TGTGGACAGCTGACCG---CTGACCAGGTGGAGTCACAGCCTGCAGAGGCT-CTGCCGGGCACAAAG 2369
Query 2271 CCTGCAGCTTGGGGCCCTGGTCCACAGTCCTGTCAACTGTCCCCTGCTGG-----GTTTCTCAGCCGTCAGCAC 2339
||.|..||| ||||| || ||..||||| ||..|||||| |||
Sbjct 2370 CCAGAGGCT------CCTGG-----AG--------------CCAGGCTGGGGAGCGTGGCTCAGC------CAC 2412
Query 2340 CTCCCTTCCACAGGGCTACCTCTGGGTCGGGGGCGGACAGGAAGGCGCAGGGGGCCAGGTGGAAATCTTTTCCT 2413
| |.||.|
Sbjct 2413 C---------CTGGCC---------------------------------------------------------- 2419
Query 2414 TGAACCGGCCCTCGCCCCGCACCGTCAAGTCCTTCCCACTGGCAGCCCCTGTGCTCTGCATGGAGTATATCCCG 2487
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 2488 GAGCTGGAGGAGGAGGCGGAGAGCAGAGACGAGAGCCCGACAGTTGCTGACCCCTCGGCCACGGTGCATCCAAC 2561
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 2562 CATCTGCCTCGGGCTCCAGGATGGCAGCATCCTCCTCTACAGCAGTGTGGACACTGGCACCCAGTGCCTGGTGA 2635
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 2636 GCTGCAGGAGCCCAGGTCTGCAGCCTGTGCTCTGCCTGCGACACAGCCCCTTCCACCTGCTCGCTGGCCTGCAG 2709
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 2710 GATGGGACCCTTGCTGCTTACCCTCGGACCAGCGGAGGTGTCCTGTGGGACCTGGAGAGCCCTCCCGTGTGCCT 2783
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 2784 GACTGTGGGGCCCGGGCCTGTCCGCACCCTGTTGAGCCTGGAGGATGCCGTGTGGGCCAGCTGTGGGCCCCGGG 2857
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 2858 TCACTGTCCTGGAAGCCACCACCCTGCAGCCTCAGCAAAGCTTCGAGGCGCACCAGGACGAGGCAGTGAGCGTG 2931
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 2932 ACACACATGGTGAAGGCGGGCAGCGGCGTCTGGATGGCCTTCTCCTCCGGCACCTCCATCCGCCTCTTCCACAC 3005
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 3006 TGAGACCCTGGAGCATCTGCAAGAGATCAACATCGCCACCAGGACCACCTTCCTCCTGCCAGGCCAGAAGCACT 3079
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 3080 TGTGTGTCACCAGCCTCCTGATCTGCCAGGGTCTGCTCTGGGTGGGCACTGACCAGGGTGTCATCGTCCTGCTG 3153
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 3154 CCCGTGCCTCGGCTGGAAGGCATCCCCAAGATCACAGGGAAAGGCATGGTCTCACTCAATGGGCACTGTGGGCC 3227
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 3228 TGTGGCCTTCCTGGCTGTGGCTACCAGCATCCTGGCCCCTGACATCCTGCGGAGTGACCAGGAGGAGGCTGAGG 3301
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 3302 GGCCCCGGGCTGAGGAGGACAAGCCAGACGGGCAGGCACACGAGCCCATGCCCGACAGCCACGTGGGCCGAGAG 3375
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 3376 CTGACCCGCAAGAAGGGCATCCTCTTGCAGTACCGCCTGCGCTCCACCGCACACCTCCCGGGCCCGCTGCTCTC 3449
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 3450 CATGCGGGAGCCGGCGCCTGCTGATGGCGCAGCTTTGGAGCACAGCGAGGAGGACGGCTCCATTTACGAGATGG 3523
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 3524 CCGACGACCCCGACGTCTGGGTGCGCAGCCGGCCCTGCGCCCGCGACGCCCACCGCAAGGAGATTTGCTCTGTG 3597
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 3598 GCCATCATCTCCGGCGGGCAGGGCTACCGCAACTTTGGCAGCGCTCTGGGCAGCAGTGGGAGGCAGGCCCCGTG 3671
Sbjct 2420 -------------------------------------------------------------------------- 2419
Query 3672 TGGGGAGACGGACAGCACCCTCCTCATCTGGCAGGTGCCCTTGATGCTA 3720
Sbjct 2420 ------------------------------------------------- 2419
