Construct: ORF ccsbBroadEn_08479
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009826.1_s300c1, BRDN0000395081
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARHGEF10L (55160)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | NM_001011722.2 | 99.8% | 99.9% | (many diffs) |
2 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_005245925.2 | 99.8% | 99.9% | (many diffs) |
3 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_011541691.2 | 99.8% | 99.8% | (many diffs) |
4 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_006710729.1 | 99.6% | 99.6% | (many diffs) |
5 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_006710731.1 | 99.6% | 99.6% | (many diffs) |
6 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_005245923.2 | 99.5% | 99.5% | (many diffs) |
7 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_006710728.1 | 99.5% | 99.5% | (many diffs) |
8 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_024448059.1 | 99.5% | 99.5% | (many diffs) |
9 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_024448061.1 | 99.5% | 99.5% | (many diffs) |
10 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_024448062.1 | 99.5% | 99.5% | (many diffs) |
11 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | NM_001319837.1 | 99.4% | 99.5% | (many diffs) |
12 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_017001617.1 | 99.4% | 99.5% | (many diffs) |
13 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_011541693.2 | 99.4% | 99.4% | (many diffs) |
14 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_011541692.2 | 99.1% | 99.1% | (many diffs) |
15 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | NM_018125.4 | 96.8% | 96.8% | (many diffs) |
16 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_017001621.1 | 96.8% | 96.8% | (many diffs) |
17 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_017001622.1 | 96.4% | 96.4% | (many diffs) |
18 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XR_001737276.1 | 84.5% | (many diffs) | |
19 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XR_946686.3 | 84.5% | (many diffs) | |
20 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_017001618.1 | 83.8% | 83.7% | (many diffs) |
21 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | NM_001328124.1 | 83.2% | 81.6% | (many diffs) |
22 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_005245929.3 | 82.8% | 81.2% | (many diffs) |
23 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XR_001737277.1 | 82.4% | (many diffs) | |
24 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_017001619.1 | 82.4% | 82.3% | (many diffs) |
25 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XM_017001620.1 | 82% | 81.9% | (many diffs) |
26 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | NM_001319838.1 | 77.2% | 75.5% | (many diffs) |
27 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XR_002956988.1 | 73.6% | (many diffs) | |
28 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XR_002956989.1 | 73.3% | (many diffs) | |
29 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | NR_137288.2 | 70.7% | (many diffs) | |
30 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | NR_137287.2 | 69.1% | (many diffs) | |
31 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XR_946689.2 | 57.6% | (many diffs) | |
32 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XR_946688.2 | 57.5% | (many diffs) | |
33 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XR_946690.2 | 57.5% | 1_142del;2197_2346del;2599_2600ins1413 | |
34 | human | 55160 | ARHGEF10L | Rho guanine nucleotide exch... | XR_946691.2 | 56.4% | (many diffs) | |
35 | mouse | 72754 | Arhgef10l | Rho guanine nucleotide exch... | NM_001112722.1 | 86.3% | 91.3% | (many diffs) |
36 | mouse | 72754 | Arhgef10l | Rho guanine nucleotide exch... | NM_001112723.1 | 85.9% | 91% | (many diffs) |
37 | mouse | 72754 | Arhgef10l | Rho guanine nucleotide exch... | XM_011250340.2 | 85.9% | 91% | (many diffs) |
38 | mouse | 72754 | Arhgef10l | Rho guanine nucleotide exch... | NM_001290803.1 | 83.6% | 88.6% | (many diffs) |
39 | mouse | 72754 | Arhgef10l | Rho guanine nucleotide exch... | XM_006539201.3 | 83.6% | 88.6% | (many diffs) |
40 | mouse | 72754 | Arhgef10l | Rho guanine nucleotide exch... | XM_006539202.1 | 83.6% | 88.6% | (many diffs) |
41 | mouse | 72754 | Arhgef10l | Rho guanine nucleotide exch... | XM_011250337.2 | 83.6% | 88.6% | (many diffs) |
42 | mouse | 72754 | Arhgef10l | Rho guanine nucleotide exch... | XM_017320396.1 | 83.6% | 88.6% | (many diffs) |
43 | mouse | 72754 | Arhgef10l | Rho guanine nucleotide exch... | NM_172415.3 | 83.3% | 88.2% | (many diffs) |
44 | mouse | 72754 | Arhgef10l | Rho guanine nucleotide exch... | XM_006539204.3 | 73.5% | 75.7% | (many diffs) |
45 | mouse | 72754 | Arhgef10l | Rho guanine nucleotide exch... | XM_017320397.1 | 73.2% | 75.4% | (many diffs) |
46 | mouse | 72754 | Arhgef10l | Rho guanine nucleotide exch... | XR_001784204.1 | 69.4% | (many diffs) | |
47 | mouse | 72754 | Arhgef10l | Rho guanine nucleotide exch... | XR_001784205.1 | 69.1% | (many diffs) | |
48 | mouse | 72754 | Arhgef10l | Rho guanine nucleotide exch... | XR_881437.2 | 57.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3789
- ORF length:
- 3720
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCTTCCTCC AACCCTCCTC CACAGCCTGC CATAGGAGAT CAGCTGGTTC 121 CAGGAGTCCC AGGCCCCTCC TCTGAGGCAG AGGACGACCC AGGAGAGGCG TTTGAGTTTG 181 ATGACAGTGA TGATGAAGAG GACACCAGCG CAGCCCTGGG CGTCCCCAGC CTTGCTCCTG 241 AGAGGGACAC AGACCCCCCA CTGATCCACT TGGACTCCAT CCCTGTCACT GACCCAGACC 301 CAGCAGCTGC TCCACCCGGC ACAGGGGTGC CAGCCTGGGT GAGCAATGGG GATGCAGCGG 361 ACGCAGCCTT CTCCGGGGCC CGGCACTCCA GCTGGAAGCG GAAGAGTTCC CGTCGCATTG 421 ACCGGTTCAC TTTCCCCGCC CTGGAAGAGG ATGTGATTTA TGACGACGTC CCCTGCGAGA 481 GCCCAGATGC GCATCAGCCC GGGGCAGAGA GGAACCTGCT CTACGAGGAT GCGCACCGGG 541 CTGGGGCCCC TCGGCAGGCG GAGGACCTAG GCTGGAGCTC CAGTGAGTTC GAGAGCTACA 601 GCGAGGACTC GGGGGAGGAG GCCAAGCCGG AGGTCGAGGT CGAGCCCGCC AAGCACCGAG 661 TGTCCTTCCA GCCCAAGATG ACCCAGCTCA TGAAGGCCGC CAAGAGCGGG ACCAAGGATG 721 GGCTGGAGAA GACACGGATG GCCGTGATGC GCAAAGTCTC CTTCCTGCAC AGGAAGGACG 781 TCCTCGGTGA CTCGGAGGAG GAGGACATGG GGCTCCTGGA GGTCAGCGTT TCGGACATCA 841 AGCCCCCAGC CCCAGAGCTG GGCCCCATGC CAGAGGGCCT GAGCCCTCAG CAGGTGGTCC 901 GGAGGCATAT CCTGGGCTCC ATCGTGCAGA GCGAAGGCAG CTACGTGGAG TCTCTGAAGC 961 GGATACTCCA GGACTACCGC AACCCCCTGA TGGAGATGGA GCCCAAGGCG CTGAGCGCCC 1021 GCAAGTGCCA GGTGGTGTTC TTCCGCGTGA AGGAGATCCT GCACTGCCAC TCCATGTTCC 1081 AGATCGCCCT GTCCTCCCGC GTGGCTGAGT GGGATTCCAC CGAGAAGATC GGGGACCTCT 1141 TCGTGGCCTC GTTTTCCAAG TCCATGGTGC TAGATGTGTA CAGTGACTAC GTGAACAACT 1201 TCACCAGTGC CATGTCCATC ATCAAGAAGG CCTGCCTCAC CAAGCCTGCC TTCCTCGAGT 1261 TCCTCAAGCG ACGGCAGGTG TGCAGCCCAG ACCGTGTCAC CCTCTACGGG CTGATGGTCA 1321 AGCCCATCCA GAGGTTCCCA CAGTTCATAC TCCTGCTTCA GGACATGCTG AAGAACACCC 1381 CCAGGGGCCA TCCGGACAGG CTGTCGCTGC AGCTGGCCCT CACAGAGCTG GAGACGCTGG 1441 CTGAGAAGCT GAACGAGCAG AAGCGGCTGG CTGACCAGGT GGCTGAGATC CAGCAGCTGA 1501 CCAAGAGCGT CAGTGACCGC AGCAGCCTCA ACAAGCTGTT GACCTCAGGC CAGCGGCAGC 1561 TGCTCCTGTG TGAGACGTTG ACGGAGACCG TGTACGGTGA CCGCGGGCAG CTAATTAAGT 1621 CCAAGGAGCG TCGGGTCTTC CTGCTCAACG ACATGCTTGT CTGTGCCAAC ATCAACTTCA 1681 AGCCTGCCAA CCACAGGGGC CAGCTGGAGA TCAGCAGCCT GGTGCCCCTG GGGCCCAAGT 1741 ATGTGGTGAA GTGGAACACG GCGCTGCCCC AGGTGCAGGT GGTGGAGGTG GGCCAGGACG 1801 GTGGCACCTA TGACAAGGAC AATGTGCTCA TCCAGCACTC AGGCGCCAAG AAGGCCTCTG 1861 CCTCAGGGCA GGCTCAGAAT AAGGTGTACC TCGGCCCCCC ACGCCTCTTC CAGGAGCTGC 1921 AGGACCTGCA GAAGGACCTG GCCGTGGTGG AGCAGATCAC GCTTCTCATC AGCACGCTGC 1981 ACGGCACCTA CCAGAACCTG AACATGACTG TGGCTCAAGA CTGGTGCCTG GCCCTGCAGA 2041 GGCTGATGCG GGTGAAGGAG GAAGAGATCC ACTCGGCCAA CAAGTGCCGT CTCAGGCTCC 2101 TGCTTCCTGG GAAACCCGAC AAGTCCGGCC GCCCCATTAG CTTCATGGTG GTTTTCATCA 2161 CCCCCAACCC CCTGAGCAAG ATTTCCTGGG TCAACAGGTT ACATTTGGCC AAAATCGGAC 2221 TCCGGGAGGA GAACCAGCCA GGCTGGCTAT GCCCGGATGA GGACAAGAAG AGCAAAGCCC 2281 CATTCTGGTG CCCGATCCTG GCCTGCTGCA TCCCTGCCTT CTCCTCCCGG GCACTCAGCC 2341 TGCAGCTTGG GGCCCTGGTC CACAGTCCTG TCAACTGTCC CCTGCTGGGT TTCTCAGCCG 2401 TCAGCACCTC CCTTCCACAG GGCTACCTCT GGGTCGGGGG CGGACAGGAA GGCGCAGGGG 2461 GCCAGGTGGA AATCTTTTCC TTGAACCGGC CCTCGCCCCG CACCGTCAAG TCCTTCCCAC 2521 TGGCAGCCCC TGTGCTCTGC ATGGAGTATA TCCCGGAGCT GGAGGAGGAG GCGGAGAGCA 2581 GAGACGAGAG CCCGACAGTT GCTGACCCCT CGGCCACGGT GCATCCAACC ATCTGCCTCG 2641 GGCTCCAGGA TGGCAGCATC CTCCTCTACA GCAGTGTGGA CACTGGCACC CAGTGCCTGG 2701 TGAGCTGCAG GAGCCCAGGT CTGCAGCCTG TGCTCTGCCT GCGACACAGC CCCTTCCACC 2761 TGCTCGCTGG CCTGCAGGAT GGGACCCTTG CTGCTTACCC TCGGACCAGC GGAGGTGTCC 2821 TGTGGGACCT GGAGAGCCCT CCCGTGTGCC TGACTGTGGG GCCCGGGCCT GTCCGCACCC 2881 TGTTGAGCCT GGAGGATGCC GTGTGGGCCA GCTGTGGGCC CCGGGTCACT GTCCTGGAAG 2941 CCACCACCCT GCAGCCTCAG CAAAGCTTCG AGGCGCACCA GGACGAGGCA GTGAGCGTGA 3001 CACACATGGT GAAGGCGGGC AGCGGCGTCT GGATGGCCTT CTCCTCCGGC ACCTCCATCC 3061 GCCTCTTCCA CACTGAGACC CTGGAGCATC TGCAAGAGAT CAACATCGCC ACCAGGACCA 3121 CCTTCCTCCT GCCAGGCCAG AAGCACTTGT GTGTCACCAG CCTCCTGATC TGCCAGGGTC 3181 TGCTCTGGGT GGGCACTGAC CAGGGTGTCA TCGTCCTGCT GCCCGTGCCT CGGCTGGAAG 3241 GCATCCCCAA GATCACAGGG AAAGGCATGG TCTCACTCAA TGGGCACTGT GGGCCTGTGG 3301 CCTTCCTGGC TGTGGCTACC AGCATCCTGG CCCCTGACAT CCTGCGGAGT GACCAGGAGG 3361 AGGCTGAGGG GCCCCGGGCT GAGGAGGACA AGCCAGACGG GCAGGCACAC GAGCCCATGC 3421 CCGACAGCCA CGTGGGCCGA GAGCTGACCC GCAAGAAGGG CATCCTCTTG CAGTACCGCC 3481 TGCGCTCCAC CGCACACCTC CCGGGCCCGC TGCTCTCCAT GCGGGAGCCG GCGCCTGCTG 3541 ATGGCGCAGC TTTGGAGCAC AGCGAGGAGG ACGGCTCCAT TTACGAGATG GCCGACGACC 3601 CCGACGTCTG GGTGCGCAGC CGGCCCTGCG CCCGCGACGC CCACCGCAAG GAGATTTGCT 3661 CTGTGGCCAT CATCTCCGGC GGGCAGGGCT ACCGCAACTT TGGCAGCGCT CTGGGCAGCA 3721 GTGGGAGGCA GGCCCCGTGT GGGGAGACGG ACAGCACCCT CCTCATCTGG CAGGTGCCCT 3781 TGATGCTATT GCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 3841 tttgttgcaa cgaac