Construct: ORF ccsbBroadEn_08479

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009826.1_s300c1, BRDN0000395081
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARHGEF10L (55160)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55160 ARHGEF10L Rho guanine nucleotide exch... NM_001011722.2 99.8% 99.9% (many diffs)
2 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_005245925.2 99.8% 99.9% (many diffs)
3 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_011541691.2 99.8% 99.8% (many diffs)
4 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_006710729.1 99.6% 99.6% (many diffs)
5 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_006710731.1 99.6% 99.6% (many diffs)
6 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_005245923.2 99.5% 99.5% (many diffs)
7 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_006710728.1 99.5% 99.5% (many diffs)
8 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_024448059.1 99.5% 99.5% (many diffs)
9 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_024448061.1 99.5% 99.5% (many diffs)
10 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_024448062.1 99.5% 99.5% (many diffs)
11 human 55160 ARHGEF10L Rho guanine nucleotide exch... NM_001319837.1 99.4% 99.5% (many diffs)
12 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_017001617.1 99.4% 99.5% (many diffs)
13 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_011541693.2 99.4% 99.4% (many diffs)
14 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_011541692.2 99.1% 99.1% (many diffs)
15 human 55160 ARHGEF10L Rho guanine nucleotide exch... NM_018125.4 96.8% 96.8% (many diffs)
16 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_017001621.1 96.8% 96.8% (many diffs)
17 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_017001622.1 96.4% 96.4% (many diffs)
18 human 55160 ARHGEF10L Rho guanine nucleotide exch... XR_001737276.1 84.5% (many diffs)
19 human 55160 ARHGEF10L Rho guanine nucleotide exch... XR_946686.3 84.5% (many diffs)
20 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_017001618.1 83.8% 83.7% (many diffs)
21 human 55160 ARHGEF10L Rho guanine nucleotide exch... NM_001328124.1 83.2% 81.6% (many diffs)
22 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_005245929.3 82.8% 81.2% (many diffs)
23 human 55160 ARHGEF10L Rho guanine nucleotide exch... XR_001737277.1 82.4% (many diffs)
24 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_017001619.1 82.4% 82.3% (many diffs)
25 human 55160 ARHGEF10L Rho guanine nucleotide exch... XM_017001620.1 82% 81.9% (many diffs)
26 human 55160 ARHGEF10L Rho guanine nucleotide exch... NM_001319838.1 77.2% 75.5% (many diffs)
27 human 55160 ARHGEF10L Rho guanine nucleotide exch... XR_002956988.1 73.6% (many diffs)
28 human 55160 ARHGEF10L Rho guanine nucleotide exch... XR_002956989.1 73.3% (many diffs)
29 human 55160 ARHGEF10L Rho guanine nucleotide exch... NR_137288.2 70.7% (many diffs)
30 human 55160 ARHGEF10L Rho guanine nucleotide exch... NR_137287.2 69.1% (many diffs)
31 human 55160 ARHGEF10L Rho guanine nucleotide exch... XR_946689.2 57.6% (many diffs)
32 human 55160 ARHGEF10L Rho guanine nucleotide exch... XR_946688.2 57.5% (many diffs)
33 human 55160 ARHGEF10L Rho guanine nucleotide exch... XR_946690.2 57.5% 1_142del;2197_2346del;2599_2600ins1413
34 human 55160 ARHGEF10L Rho guanine nucleotide exch... XR_946691.2 56.4% (many diffs)
35 mouse 72754 Arhgef10l Rho guanine nucleotide exch... NM_001112722.1 86.3% 91.3% (many diffs)
36 mouse 72754 Arhgef10l Rho guanine nucleotide exch... NM_001112723.1 85.9% 91% (many diffs)
37 mouse 72754 Arhgef10l Rho guanine nucleotide exch... XM_011250340.2 85.9% 91% (many diffs)
38 mouse 72754 Arhgef10l Rho guanine nucleotide exch... NM_001290803.1 83.6% 88.6% (many diffs)
39 mouse 72754 Arhgef10l Rho guanine nucleotide exch... XM_006539201.3 83.6% 88.6% (many diffs)
40 mouse 72754 Arhgef10l Rho guanine nucleotide exch... XM_006539202.1 83.6% 88.6% (many diffs)
41 mouse 72754 Arhgef10l Rho guanine nucleotide exch... XM_011250337.2 83.6% 88.6% (many diffs)
42 mouse 72754 Arhgef10l Rho guanine nucleotide exch... XM_017320396.1 83.6% 88.6% (many diffs)
43 mouse 72754 Arhgef10l Rho guanine nucleotide exch... NM_172415.3 83.3% 88.2% (many diffs)
44 mouse 72754 Arhgef10l Rho guanine nucleotide exch... XM_006539204.3 73.5% 75.7% (many diffs)
45 mouse 72754 Arhgef10l Rho guanine nucleotide exch... XM_017320397.1 73.2% 75.4% (many diffs)
46 mouse 72754 Arhgef10l Rho guanine nucleotide exch... XR_001784204.1 69.4% (many diffs)
47 mouse 72754 Arhgef10l Rho guanine nucleotide exch... XR_001784205.1 69.1% (many diffs)
48 mouse 72754 Arhgef10l Rho guanine nucleotide exch... XR_881437.2 57.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3789
ORF length:
3720
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCTTCCTCC AACCCTCCTC CACAGCCTGC CATAGGAGAT CAGCTGGTTC
121CAGGAGTCCC AGGCCCCTCC TCTGAGGCAG AGGACGACCC AGGAGAGGCG TTTGAGTTTG
181ATGACAGTGA TGATGAAGAG GACACCAGCG CAGCCCTGGG CGTCCCCAGC CTTGCTCCTG
241AGAGGGACAC AGACCCCCCA CTGATCCACT TGGACTCCAT CCCTGTCACT GACCCAGACC
301CAGCAGCTGC TCCACCCGGC ACAGGGGTGC CAGCCTGGGT GAGCAATGGG GATGCAGCGG
361ACGCAGCCTT CTCCGGGGCC CGGCACTCCA GCTGGAAGCG GAAGAGTTCC CGTCGCATTG
421ACCGGTTCAC TTTCCCCGCC CTGGAAGAGG ATGTGATTTA TGACGACGTC CCCTGCGAGA
481GCCCAGATGC GCATCAGCCC GGGGCAGAGA GGAACCTGCT CTACGAGGAT GCGCACCGGG
541CTGGGGCCCC TCGGCAGGCG GAGGACCTAG GCTGGAGCTC CAGTGAGTTC GAGAGCTACA
601GCGAGGACTC GGGGGAGGAG GCCAAGCCGG AGGTCGAGGT CGAGCCCGCC AAGCACCGAG
661TGTCCTTCCA GCCCAAGATG ACCCAGCTCA TGAAGGCCGC CAAGAGCGGG ACCAAGGATG
721GGCTGGAGAA GACACGGATG GCCGTGATGC GCAAAGTCTC CTTCCTGCAC AGGAAGGACG
781TCCTCGGTGA CTCGGAGGAG GAGGACATGG GGCTCCTGGA GGTCAGCGTT TCGGACATCA
841AGCCCCCAGC CCCAGAGCTG GGCCCCATGC CAGAGGGCCT GAGCCCTCAG CAGGTGGTCC
901GGAGGCATAT CCTGGGCTCC ATCGTGCAGA GCGAAGGCAG CTACGTGGAG TCTCTGAAGC
961GGATACTCCA GGACTACCGC AACCCCCTGA TGGAGATGGA GCCCAAGGCG CTGAGCGCCC
1021GCAAGTGCCA GGTGGTGTTC TTCCGCGTGA AGGAGATCCT GCACTGCCAC TCCATGTTCC
1081AGATCGCCCT GTCCTCCCGC GTGGCTGAGT GGGATTCCAC CGAGAAGATC GGGGACCTCT
1141TCGTGGCCTC GTTTTCCAAG TCCATGGTGC TAGATGTGTA CAGTGACTAC GTGAACAACT
1201TCACCAGTGC CATGTCCATC ATCAAGAAGG CCTGCCTCAC CAAGCCTGCC TTCCTCGAGT
1261TCCTCAAGCG ACGGCAGGTG TGCAGCCCAG ACCGTGTCAC CCTCTACGGG CTGATGGTCA
1321AGCCCATCCA GAGGTTCCCA CAGTTCATAC TCCTGCTTCA GGACATGCTG AAGAACACCC
1381CCAGGGGCCA TCCGGACAGG CTGTCGCTGC AGCTGGCCCT CACAGAGCTG GAGACGCTGG
1441CTGAGAAGCT GAACGAGCAG AAGCGGCTGG CTGACCAGGT GGCTGAGATC CAGCAGCTGA
1501CCAAGAGCGT CAGTGACCGC AGCAGCCTCA ACAAGCTGTT GACCTCAGGC CAGCGGCAGC
1561TGCTCCTGTG TGAGACGTTG ACGGAGACCG TGTACGGTGA CCGCGGGCAG CTAATTAAGT
1621CCAAGGAGCG TCGGGTCTTC CTGCTCAACG ACATGCTTGT CTGTGCCAAC ATCAACTTCA
1681AGCCTGCCAA CCACAGGGGC CAGCTGGAGA TCAGCAGCCT GGTGCCCCTG GGGCCCAAGT
1741ATGTGGTGAA GTGGAACACG GCGCTGCCCC AGGTGCAGGT GGTGGAGGTG GGCCAGGACG
1801GTGGCACCTA TGACAAGGAC AATGTGCTCA TCCAGCACTC AGGCGCCAAG AAGGCCTCTG
1861CCTCAGGGCA GGCTCAGAAT AAGGTGTACC TCGGCCCCCC ACGCCTCTTC CAGGAGCTGC
1921AGGACCTGCA GAAGGACCTG GCCGTGGTGG AGCAGATCAC GCTTCTCATC AGCACGCTGC
1981ACGGCACCTA CCAGAACCTG AACATGACTG TGGCTCAAGA CTGGTGCCTG GCCCTGCAGA
2041GGCTGATGCG GGTGAAGGAG GAAGAGATCC ACTCGGCCAA CAAGTGCCGT CTCAGGCTCC
2101TGCTTCCTGG GAAACCCGAC AAGTCCGGCC GCCCCATTAG CTTCATGGTG GTTTTCATCA
2161CCCCCAACCC CCTGAGCAAG ATTTCCTGGG TCAACAGGTT ACATTTGGCC AAAATCGGAC
2221TCCGGGAGGA GAACCAGCCA GGCTGGCTAT GCCCGGATGA GGACAAGAAG AGCAAAGCCC
2281CATTCTGGTG CCCGATCCTG GCCTGCTGCA TCCCTGCCTT CTCCTCCCGG GCACTCAGCC
2341TGCAGCTTGG GGCCCTGGTC CACAGTCCTG TCAACTGTCC CCTGCTGGGT TTCTCAGCCG
2401TCAGCACCTC CCTTCCACAG GGCTACCTCT GGGTCGGGGG CGGACAGGAA GGCGCAGGGG
2461GCCAGGTGGA AATCTTTTCC TTGAACCGGC CCTCGCCCCG CACCGTCAAG TCCTTCCCAC
2521TGGCAGCCCC TGTGCTCTGC ATGGAGTATA TCCCGGAGCT GGAGGAGGAG GCGGAGAGCA
2581GAGACGAGAG CCCGACAGTT GCTGACCCCT CGGCCACGGT GCATCCAACC ATCTGCCTCG
2641GGCTCCAGGA TGGCAGCATC CTCCTCTACA GCAGTGTGGA CACTGGCACC CAGTGCCTGG
2701TGAGCTGCAG GAGCCCAGGT CTGCAGCCTG TGCTCTGCCT GCGACACAGC CCCTTCCACC
2761TGCTCGCTGG CCTGCAGGAT GGGACCCTTG CTGCTTACCC TCGGACCAGC GGAGGTGTCC
2821TGTGGGACCT GGAGAGCCCT CCCGTGTGCC TGACTGTGGG GCCCGGGCCT GTCCGCACCC
2881TGTTGAGCCT GGAGGATGCC GTGTGGGCCA GCTGTGGGCC CCGGGTCACT GTCCTGGAAG
2941CCACCACCCT GCAGCCTCAG CAAAGCTTCG AGGCGCACCA GGACGAGGCA GTGAGCGTGA
3001CACACATGGT GAAGGCGGGC AGCGGCGTCT GGATGGCCTT CTCCTCCGGC ACCTCCATCC
3061GCCTCTTCCA CACTGAGACC CTGGAGCATC TGCAAGAGAT CAACATCGCC ACCAGGACCA
3121CCTTCCTCCT GCCAGGCCAG AAGCACTTGT GTGTCACCAG CCTCCTGATC TGCCAGGGTC
3181TGCTCTGGGT GGGCACTGAC CAGGGTGTCA TCGTCCTGCT GCCCGTGCCT CGGCTGGAAG
3241GCATCCCCAA GATCACAGGG AAAGGCATGG TCTCACTCAA TGGGCACTGT GGGCCTGTGG
3301CCTTCCTGGC TGTGGCTACC AGCATCCTGG CCCCTGACAT CCTGCGGAGT GACCAGGAGG
3361AGGCTGAGGG GCCCCGGGCT GAGGAGGACA AGCCAGACGG GCAGGCACAC GAGCCCATGC
3421CCGACAGCCA CGTGGGCCGA GAGCTGACCC GCAAGAAGGG CATCCTCTTG CAGTACCGCC
3481TGCGCTCCAC CGCACACCTC CCGGGCCCGC TGCTCTCCAT GCGGGAGCCG GCGCCTGCTG
3541ATGGCGCAGC TTTGGAGCAC AGCGAGGAGG ACGGCTCCAT TTACGAGATG GCCGACGACC
3601CCGACGTCTG GGTGCGCAGC CGGCCCTGCG CCCGCGACGC CCACCGCAAG GAGATTTGCT
3661CTGTGGCCAT CATCTCCGGC GGGCAGGGCT ACCGCAACTT TGGCAGCGCT CTGGGCAGCA
3721GTGGGAGGCA GGCCCCGTGT GGGGAGACGG ACAGCACCCT CCTCATCTGG CAGGTGCCCT
3781TGATGCTATT GCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
3841tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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