Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08607
- Subject:
- NR_033703.2
- Aligned Length:
- 4969
- Identities:
- 1713
- Gaps:
- 3255
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGTGACGTCCTCCCAAGATGGCGGAGACAGAGTGAAGAAACTGTGTTCCCCCCTTGGGTTGCTATCGATCAAGG 74
Query 1 ------------------------ATGCGGTATTCGCACCACTGTGAGCACCTTTTAGAGAGACTGAACAAACA 50
||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GTAAAATTCCATTCTGATATCAAAATGCAGTATTCGCACCACTGTGAGCACCTTTTAGAGAGACTGAACAAACA 148
Query 51 GCGGGAAGCAGGTTTTCTCTGTGACTGTACCATAGTGATTGGGGAATTCCAGTTTAAAGCTCATAGGAATGTGC 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCGGGAAGCAGGTTTTCTCTGTGACTGTACCATAGTGATTGGGGAATTCCAGTTTAAAGCTCATAGGAATGTGC 222
Query 125 TGGCCTCCTTTAGTGAGTATTTTGGTGCGATCTACAGAAGCACTTCTGAGAACAATGTCTTTCTTGATCAGAGT 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TGGCCTCCTTTAGTGAGTATTTTGGTGCGATCTACAGAAGCACTTCTGAGAACAATGTCTTTCTTGATCAGAGT 296
Query 199 CAGGTGAAGGCTGATGGATTTCAGAAACTGTTGGAGTTTATATACACAGGAACTTTAAATCTTGACAGTTGGAA 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAGGTGAAGGCTGATGGATTTCAGAAACTGTTGGAGTTTATATACACAGGAACTTTAAATCTTG---------- 360
Query 273 TGTTAAAGAAATTCATCAGGCTGCTGACTATCTCAAAGTGGAAGAGGTGGTCACTAAATGCAAAATAAAGATGG 346
Sbjct 361 -------------------------------------------------------------------------- 360
Query 347 AAGATTTTGCTTTTATTGCTAATCCTTCTTCTACAGAGATATCTAGTATTACTGGAAACATTGAATTGAATCAA 420
||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 --------------------------------ACAGAGATATCTAGTATTACTGGAAACATTGAATTGAATCAA 402
Query 421 CAGACTTGTCTTCTTACTCTGCGAGATTATAATAATCGAGAGAAATCAGAAGTATCTACAGATTTGATTCAGGC 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 CAGACTTGTCTTCTTACTCTGCGAGATTATAATAATCGAGAGAAATCAGAAGTATCTACAGATTTGATTCAGGC 476
Query 495 AAATCCTAAACAAGGCGCGTTAGCGAAAAAGTCATCTCAAACGAAAAAGAAGAAGAAGGCTTTCAACTCCCCGA 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AAATCCTAAACAAGGCGCGTTAGCGAAAAAGTCATCTCAAACGAAAAAGAAGAAGAAGGCTTTCAACTCCCCGA 550
Query 569 AAACAGGGCAGAATAAAACAGTGCAATATCCCAGTGACATCTTAGAGAATGCATCTGTTGAATTATTCCTAGAT 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 AAACAGGGCAGAATAAAACAGTGCAATATCCCAGTGACATCTTAGAGAATGCATCTGTTGAATTATTCCTAGAT 624
Query 643 GCAAATAAACTGCCCACACCTGTAGTAGAACAAGTTGCACAAATAAATGATAATTCAGAACTCGAGTTGACATC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 GCAAATAAACTGCCCACACCTGTAGTAGAACAAGTTGCACAAATAAATGATAATTCAGAACTCGAGTTGACATC 698
Query 717 AGTTGTGGAAAATACTTTTCCAGCACAAGATATTGTGCACACTGTTACAGTGAAACGGAAACGTGGAAAATCAC 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 AGTTGTGGAAAATACTTTTCCAGCACAAGATATTGTGCACACTGTTACAGTGAAACGGAAACGTGGAAAATCAC 772
Query 791 AGCCAAACTGTGCTCTGAAAGAACACTCTATGTCTAATATAGCCAGCGTCAAGAGTCCTTATGAGGCGGAGAAC 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 AGCCAAACTGTGCTCTGAAAGAACACTCTATGTCTAATATAGCCAGCGTCAAGAGTCCTTATGAGGCGGAGAAC 846
Query 865 TCCGGGGAAGAGCTGGATCAGAGGTATTCCAAGGCCAAGCCAATGTGTAACACATGTGGGAAAGTGTTTTCAGA 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 TCCGGGGAAGAGCTGGATCAGAGGTATTCCAAGGCCAAGCCAATGTGTAACACATGTGGGAAAGTGTTTTCAGA 920
Query 939 AGCCAGCAGTTTGAGAAGGCACATGAGAATACATAAAGGAGTCAAACCTTACGTCTGCCACTTATGTGGAAAGG 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 AGCCAGCAGTTTGAGAAGGCACATGAGAATACATAAAGGAGTCAAACCTTACGTCTGCCACTTATGTGGAAAGG 994
Query 1013 CATTTACCCAATGTAACCAGCTGAAAACGCATGTAAGAACTCATACAGGTGAGAAGCCATACAAATGTGAATTG 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 CATTTACCCAATGTAACCAGCTGAAAACGCATGTAAGAACTCATACAGGTGAGAAGCCATACAAATGTGAATTG 1068
Query 1087 TGTGATAAAGGATTTGCTCAGAAATGTCAGCTAGTCTTCCATAGTCGCATGCATCATGGTGAAGAAAAACCCTA 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TGTGATAAAGGATTTGCTCAGAAATGTCAGCTAGTCTTCCATAGTCGCATGCATCATGGTGAAGAAAAACCCTA 1142
Query 1161 TAAATGTGATGTATGCAACTTACAGTTTGCAACTTCTAGCAATCTCAAGATTCATGCAAGGAAGCATAGTGGAG 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 TAAATGTGATGTATGCAACTTACAGTTTGCAACTTCTAGCAATCTCAAGATTCATGCAAGGAAGCATAGTGGAG 1216
Query 1235 AGAAGCCATATGTCTGTGATAGGTGTGGACAGAGATTTGCTCAAGCCAGCACACTGACCTATCATGTCCGTAGG 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 AGAAGCCATATGTCTGTGATAGGTGTGGACAGAGATTTGCTCAAGCCAGCACACTGACCTATCATGTCCGTAGG 1290
Query 1309 CATACTGGAGAAAAGCCTTATGTATGTGATACCTGTGGGAAGGCATTTGCTGTCTCTAGTTCTCTTATCACTCA 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 CATACTGGAGAAAAGCCTTATGTATGTGATACCTGTGGGAAGGCATTTGCTGTCTCTAGTTCTCTTATCACTCA 1364
Query 1383 TTCTCGAAAACATACAGGTGAAAAACCATACATATGTGGTATTTGTGGGAAAAGTTTTATTTCCTCAGGAGAGC 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TTCTCGAAAACATACAGGTGAAAAACCATACATATGTGGTATTTGTGGGAAAAGTTTTATTTCCTCAGGAGAGC 1438
Query 1457 TCAACAAACACTTTCGGTCCCATACAGGAGAAAGACCATTTATCTGCGAATTATGTGGAAATTCTTACACAGAT 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TCAACAAACACTTTCGGTCCCATACAGGAGAAAGACCATTTATCTGCGAATTATGTGGAAATTCTTACACAGAT 1512
Query 1531 ATTAAAAATTTAAAGAAGCACAAAACAAAAGTCCATTCTGGTGCAGATAAAACTCTAGACTCCAGTGCAGAGGA 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 ATTAAAAATTTAAAGAAGCACAAAACAAAAGTCCATTCTGGTGCAGATAAAACTCTAGACTCCAGTGCAGAGGA 1586
Query 1605 TCATACTTTGAGTGAACAGGATTCCATACAAAAAAGTCCTTTATCAGAAACTATGGATGTGAAGCCTTCTGATA 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 TCATACTTTGAGTGAACAGGATTCCATACAAAAAAGTCCTTTATCAGAAACTATGGATGTGAAGCCTTCTGATA 1660
Query 1679 TGACTTTACCATTAGCTCTTCCACTTGGGACTGAGGACCATCACATGCTTCTGCCTGTCACGGATACTCAGTCT 1752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 TGACTTTACCATTAGCTCTTCCACTTGGGACTGAGGACCATCACATGCTTCTGCCTGTCACGGATACTCAGTCT 1734
Query 1753 CCTACATCAGATACATTGTTGAGGTCAACTGTGAATGGGTATTCAGAACCACAGTTGATTTTTTTACAACAATT 1826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 CCTACATCAGATACATTGTTGAGGTCAACTGTGAATGGGTATTCAGAACCACAGTTGATTTTTTTACAACAATT 1808
Query 1827 ATAC---------------------------------------------------------------------- 1830
||||
Sbjct 1809 ATACTGACTTTGTAAGGAATATGGAATTGCTAAGATATCATTGGTAGCAAACATCTCTGGTAAGGTGCATATAT 1882
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 1883 TCATATTAAATTCCCATTCATTTGAGTTGTGACCATTATTTTTCATTCACTGAAGTAAAAGCACCTGATGCTGC 1956
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 1957 ATCACAACTGCAATGTTTGTTTTTATTTTTGGCTTTATGTCTATACTCCACAGAGAGCTTTTTAAGTAATGAAT 2030
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2031 TATGTAGCACTATTTTGGGTGGATGAGTTTTATTTTCTTTTAAAGCTGCCTTAATTCCATTTTTATTTTGCATT 2104
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2105 TTAGAATTGCCCTTCATTTACTAAATCAGCCAGTTAATGTGATTCAGTTGTGACCTGTGGGATTTTAAAATTTT 2178
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2179 CCTGCCCTCATAATTTAAGCAAAATCCACGATAGTATCAGCCCAAGAGTGTGTTGCTATTTGTAAGCCCCATGG 2252
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2253 ATCAATACATAAACTATGCATAAAAATAAAATTTCATATTTTCGCTCGTAAAAATTTAGGCGCTGAATAAGAAT 2326
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2327 TGTGCTATTTCTCTATTAATATATTGTTAGAAATAACTTTTCTAATGAAACAAAAATGTTTCTCAAAATCTAGA 2400
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2401 AAAGTGCATATAAATTTTTGTTCATTTAGAACTGAGTATTCTGGAGAAAACCAATGGTCAGCACTTTTGGTTTG 2474
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2475 AGTTATCTGAGATTGTATTTTCAAAATGAATTTTAAGTAGATATTTGGTGTTTTTATCTTGTCAAAGACAGTTT 2548
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2549 CAAAATTTGATTCAGTTTATGTTTTATTCCGTTCTAAAATATTGGAGATGAGGAAAATGTACTTGAGTTTTGAA 2622
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2623 ATATTTTGGTAAGCCTCTCTTACTCCTGTTATGCACTTTTTAAAATAAATACTGAATTCCAGAAAGAATTTTCT 2696
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2697 AGATATAAACTTAATGCATACTAGAAATCACTTGGCTTCTAAATTTGGTACATTATATTGCATAAAGAGTTAAG 2770
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2771 AAATTAACCTCAATTATAAGTAAACATTTTGAGTTACCAGAAAGCCAACTATAGTTAAATATTTTATATCTGAG 2844
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2845 TTTTCTATAAGTTTGGGGTTTGTTAATTTTATAAATTAAACCACAACTTTTGGTGGTGGTTGTAGTTTCACAAT 2918
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2919 GGTCCTTTTCCTTCCAAATGAATGTAGAAAATTCGTTATTATCCTGATATTTGCACCACTCATCCCCATGCCAC 2992
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2993 TTTTCCCACATATTAATTTATTTCACTGCCTGATCTTTGGATATGAAATTATGAGTTCCACAAAGTCAATTTTT 3066
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3067 ATAGTGCCAATCAAACAGCATGGTGATATTCTTTTTCTTTTTTTTTCCCCCCACAAGGCTGTTGTTCAGTGTGA 3140
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3141 GATGACATCATTTCTTATTTCTGCCATGCTGTGGCTTTTTTGTGTTCTGCTTTTAAACTACACCTGTAGTACAG 3214
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3215 TTAATATGTTTTTTATTGGTATTGATTTCTTTAATTCATTAATTTTCTCTATTTGGGACCCAAGTCATAAGAAC 3288
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3289 CAATTAGAGGACATAATAAAAACACTTAATGCTTGTAGTCTGTAGAGATCTTCACCATTTCACAGCACACACAT 3362
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3363 TATTTTCATAATAAATTGCCACTGGTGGGACATGGGACTGACTTATTTGAATAGAGTTTGAAATACCACCTTTG 3436
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3437 TATGATGCAAACAATATTTGATTATTTTATCTAAGAAATCTATGCATGTGTATCAAGTTAAAATAGTGGGTTTA 3510
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3511 AATACAATTTACAAAGCATTAGAATGTTACCTAATCTCTTCTGGGTTAAATGTGATAGGAATGTATTGGAATGT 3584
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3585 GAAGAAATTATAGAAAATTAAAAGACTCAGCCTCTTTAGGAAGTTTGCTAAAATGGAGAGGTTATGTTTAATTT 3658
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3659 ATTTATATCTTCGTTAATCCAAGCATCTAATGAACAAAAAACTGCTACAGTGACGTCATAATTCTATAAGGGCA 3732
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3733 ATAGTTGCCAAATTTCCTCTGGTATTATTAGCATTCTGCCTTTGCATAGATTAGCCTTCAAATTTATTATTTTT 3806
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3807 AGTATTATTTGATACGATTGAAGTGGCTAAGATTGATTGAGCTTTTCTTGATCACATTTTCTGCTTCTTAGCTA 3880
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3881 AAGTAATTTTATTTAAATTGACATGGCTTGAGTTGTCATCATTTTCTGCTCTTCTAGAATGATGTGTAGAGAAA 3954
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3955 ACTTGAAGATACTATCCCTTCTTTGGCATTCTTCTCTTAATGCTATGCTATTATTTATCATAATATGCATATAT 4028
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4029 TTAGTTGTATCTGGTATCATTCTAACACTCATAACTACCATTTTAGTTAAGTCCAACTTTATATTTGTTACAAT 4102
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4103 GCAGTGTTTTGGGAAAGGTCTATTAGTAATTATTTAAGTATTACATATTTTTATGGAAGTCTTTAGAAGGTGAA 4176
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4177 GATCTTACTGAGAAACTATTTTCTAAATAAATTTAATTTTCTTTTGTATTTGTATCAGATCATGCCTACTGTAT 4250
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4251 GTTAGATTTTAGACTATTTTAAAAGAAACCGTAGATTATATAAAAATTTTTTTGCTGTTTTTAAATGGCATTTG 4324
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4325 TCTTATGTTTAATTTCACAGGATGATTTTGATAGACAAATTTTAGAAAACCTTTTTTCAAAGGTAATGGTTCTA 4398
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4399 TCAGTTTCATTCCAACAGTAGCTAATTTCTGTGTTTCAGTCCTACAGAAATTGTGTGAGTAGTTGAAATAATGT 4472
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4473 ACATGTACTAGTTTTTTTAAGTATTCTAAATAGTTCTAACATTTAATGCATATCAGAAACATGCTTAAGAAATA 4546
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4547 ACAATATCCAGGCCCACCCCACCTATTGAATCAGACAGTTCCCAGGGCATATATATGCTGGGGAAGCCCCATAG 4620
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4621 GTGATTTTAATGTATACCAAACATGTAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGACGTGATCTCAG 4694
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4695 CTAACTGCAACCTCTGCCTCCTGGATTCAAGCAATTCTCCGGCCTCAGCCTCCTGAGTAGCTGGTACTACAGGT 4768
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4769 GCGCGCCACCACACCTGACTAATTTTTGTTAGAGATGGGGTTTCATTCTGTTGGCCAGGCTGGTCTCGAACTCC 4842
Query 1831 ----------- 1830
Sbjct 4843 TGACCTCAGGT 4853
