Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08720
- Subject:
- NM_001350550.1
- Aligned Length:
- 2838
- Identities:
- 1681
- Gaps:
- 1155
Alignment
Query 1 ATGGTGCCCTGGGTGCGGACGATGGGGCAGAAGCTGAAGCAGCGGCTGCGACTGGACGTGGGACGCGAGATCTG 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CCGCCAGTACCCGCTGTTCTGCTTCCTGCTGCTCTGTCTCAGCGCCGCCTCCCTGCTTCTTAACAGGTATATTC 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 ATATTTTAATGATCTTCTGGTCATTTGTTGTTGGAGTTGTCACATTCTACTGCTCACTAGGACCTGATTCTCTC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TTACCAAATATATTCTTCACAATAAAATACAAACCCAAGCAGTTAGGACTTCAGGAATTATTTCCTCAAGGTCA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 TAGCTGTGCTGTTTGTGGTAAAGTGAAATGTAAACGACATAGGCCTTCTTTGCTACTTGAAAACTACCAGCCAT 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 GGCTAGACCTGAAAATTTCTTCCAAGGTTGATGCATCTCTCTCAGAGGTTCTTGAATTAGTGTTGGAAAACTTT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 GTTTATCCGTGGTACAGGGATGTGACAGATGATGAATCCTTTGTTGATGAACTGAGAATAACATTACGTTTTTT 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 TGCATCTGTCTTAATAAGAAGGATTCACAAGGTGGATATTCCATCTATTATAACCAAGAAACTATTAAAAGCAG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 CAATGAAGCATATAGAAGTGATAGTTAAAGCCAGACAGAAAGTAAAAAATACAGAGTTTTTACAGCAAGCTGCT 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 TTAGAAGAATATGGTCCAGAGCTTCATGTTGCTTTGAGAAGTCGAAGAGATGAATTGCACTATTTAAGGAAACT 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 TACTGAACTGCTTTTTCCTTATATTTTGCCTCCTAAAGCAACAGACTGCAGATCTCTGACCTTACTTATAAGAG 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 AGATTCTGTCTGGCTCTGTGTTCCTTCCTTCTTTGGATTTCCTAGCTGATCCAGATACTGTGAATCATTTGCTT 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 ATCATCTTCATAGATGACAGTCCACCTGAAAAAGCAACTGAACCGGCTTCTCCTTTGGTTCGATTCTTGCAGAA 962
Sbjct 1 -------------------------------------------------------------------------- 0
Query 963 ATTTGCAGAACCTAGAAATAAAAAGCCATCTGTGCTGAAGTTAGAATTGAAGCAAATCAGAGAGCAACAAGATC 1036
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1037 TTTTATTTCGTTTTATGAACTTCCTGAAACAAGAAGGCGCAGTGCACGTGTTGCAGTTTTGTTTGACTGTGGAG 1110
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1111 GAATTTAATGATAGAATTTTACGACCAGAATTATCAAATGATGAAATGCTGTCTCTTCATGAAGAATTGCAGAA 1184
|||||||||||||||||||||||||||||
Sbjct 1 ---------------------------------------------ATGCTGTCTCTTCATGAAGAATTGCAGAA 29
Query 1185 GATTTATAAAACATACTGTTTGGATGAAAGTATTGACAAAATTAGATTTGATCCCTTCATTGTAGAAGAGATTC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 30 GATTTATAAAACATACTGTTTGGATGAAAGTATTGACAAAATTAGATTTGATCCCTTCATTGTAGAAGAGATTC 103
Query 1259 AAAGAATTGCTGAGGGCCCATACATAGATGTTGTGAAACTTCAAACTATGAGATGTCTTTTTGAAGCATATGAA 1332
|||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 AAAGAATTGCTGAAGGCCCATACATAGATGTTGTGAAACTTCAAACTATGAGATGTCTTTTTGAAGCATATGAA 177
Query 1333 CATGTTCTTTCCCTTTTGGAGAATGTATTTACTCCTATGTTCTGCCATAGTGATGAGTATTTCAGACAACTTTT 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CATGTTCTTTCCCTTTTGGAGAATGTATTTACTCCTATGTTCTGCCATAGTGATGAGTATTTCAGACAACTTTT 251
Query 1407 AAGAGGTGCAGAATCACCAACACGCAATTCAAAATTGAACAGAGGTAGCCTAAGTTTGGATGATTTTCGGAACA 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 AAGAGGTGCAGAATCACCAACACGCAATTCAAAATTGAACAGAGGTAGCCTAAGTTTGGATGATTTTCGGAACA 325
Query 1481 CACAGAAAAGGGGAGAATCATTTGGAATCAGCAGAATAGGTAGCAAAATTAAAGGAGTATTCAAAAGTACCACA 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 CACAGAAAAGGGGAGAATCATTTGGAATCAGCAGAATAGGTAGCAAAATTAAAGGAGTATTCAAAAGTACCACA 399
Query 1555 ATGGAGGGAGCTATGTTGCCTAATTATGGTGTAGCTGAAGGTGAAGATGATTTTATTGAAGAAGGTATTGTTGT 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 ATGGAGGGAGCTATGTTGCCTAATTATGGTGTAGCTGAAGGTGAAGATGATTTTATTGAAGAAGGTATTGTTGT 473
Query 1629 AATGGAAGATGATTCTCCAGTGGAGGCTGTGAGCACACCTAATACTCCCCGAAACCTTGCTGCATGGAAAATTA 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 AATGGAAGATGATTCTCCAGTGGAGGCTGTGAGCACACCTAATACTCCCCGAAACCTTGCTGCATGGAAAATTA 547
Query 1703 GCATTCCATATGTAGACTTTTTTGAGGATCCCTCCTCTGAAAGGAAGGAGAAAAAAGAAAGAATTCCTGTGTTT 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GCATTCCATATGTAGACTTTTTTGAGGATCCCTCCTCTGAAAGGAAGGAGAAAAAAGAAAGAATTCCTGTGTTT 621
Query 1777 TGTATTGATGTTGAAAGAAATGATAGAAGAGCAGTTGGACACGAGCCTGAACATTGGTCTGTCTATAGAAGATA 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 TGTATTGATGTTGAAAGAAATGATAGAAGAGCAGTTGGACACGAGCCTGAACATTGGTCTGTCTATAGAAGATA 695
Query 1851 TCTTGAATTCTATGTACTTGAATCAAAACTAACAGAATTTCATGGTGCATTTCCTGATGCCCAGCTTCCTTCTA 1924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 TCTTGAATTCTATGTACTTGAATCAAAACTAACAGAATTTCATGGTGCATTTCCTGATGCCCAGCTTCCTTCTA 769
Query 1925 AGAGGATCATTGGCCCCAAAAATTATGAATTCTTAAAGTCAAAGAGGGAAGAGTTCCAAGAATATCTACAGAAA 1998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 AGAGGATCATTGGCCCCAAAAATTATGAATTCTTAAAGTCAAAGAGGGAAGAGTTCCAAGAATATCTACAGAAA 843
Query 1999 CTTCTGCAGCATCCAGAACTGAGTAATAGTCAACTTCTGGCAGACTTTCTTTCCCCTAATGGTGGGGAAACACA 2072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 CTTCTGCAGCATCCAGAACTGAGTAATAGTCAACTTCTGGCAGACTTTCTTTCCCCTAATGGTGGGGAAACACA 917
Query 2073 ATTTCTTGATAAGATACTACCAGATGTAAATCTTGGGAAAATTATAAAATCTGTTCCTGGAAAACTAATGAAAG 2146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 ATTTCTTGATAAGATACTACCAGATGTAAATCTTGGGAAAATTATAAAATCTGTTCCTGGAAAACTAATGAAAG 991
Query 2147 AGAAAGGTCAGCATTTGGAACCTTTTATCATGAATTTCATTAATTCTTGTGAGTCTCCAAAGCCTAAACCAAGT 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 AGAAAGGTCAGCATTTGGAACCTTTTATCATGAATTTCATTAATTCTTGTGAGTCTCCAAAGCCTAAACCAAGT 1065
Query 2221 AGACCAGAACTGACCATTCTCAGCCCTACTTCAGAAAACAACAAGAAGCTTTTCAATGATCTGTTTAAAAATAA 2294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 AGACCAGAACTGACCATTCTCAGCCCTACTTCAGAAAACAACAAGAAGCTTTTCAATGATCTGTTTAAAAATAA 1139
Query 2295 TGCAAACCGTGCTGAAAATACAGAGAGAAAGCAAAATCAGAATTATTTTATGGAGGTGATGACTGTAGAAGGAG 2368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGCAAACCGTGCTGAAAATACAGAGAGAAAGCAAAATCAGAATTATTTTATGGAGGTGATGACTGTAGAAGGAG 1213
Query 2369 TCTATGATTACCTGATGTATGTAGGACGGGTAGTTTTCCAGGTTCCTGACTGGCTTCATCATCTCTTAATGGGA 2442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 TCTATGATTACCTGATGTATGTAGGACGGGTAGTTTTCCAGGTTCCTGACTGGCTTCATCATCTCTTAATGGGA 1287
Query 2443 ACTCGAATCCTCTTTAAAAACACCTTGGAAATGTATACTGATTACTATCTTCAGTGTAAACTAGAACAGCTATT 2516
||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 ACTCGAATCCTCTTTAAAAACACCCTGGAAATGTATACTGATTACTATCTTCAGTGTAAACTAGAACAGCTATT 1361
Query 2517 TCAGGAGCACCGTTTGGTCTCACTCATAACACTTCTCAGAGATGCTATATTCTGTGAAAACACTGAACCTCGCT 2590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 TCAGGAGCACCGTTTGGTCTCACTCATAACACTTCTCAGAGATGCTATATTCTGTGAAAACACTGAACCTCGCT 1435
Query 2591 CTCTCCAAGATAAGCAAAAAGGAGCAAAACAGACTTTTGAAGAAATGATGAATTACATTCCAGATCTGTTAGTC 2664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 CTCTCCAAGATAAGCAAAAAGGAGCAAAACAGACTTTTGAAGAAATGATGAATTACATTCCAGATCTGTTAGTC 1509
Query 2665 AAGTGTATTGGTGAAGAAACCAAGTATGAAAGCATCAGACTTCTGTTTGATGGCTTACAGCAACCAGTACTCAA 2738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 AAGTGTATTGGTGAAGAAACCAAGTATGAAAGCATCAGACTTCTGTTTGATGGCTTACAGCAACCAGTACTCAA 1583
Query 2739 CAAGCAGCTGACTTATGTTTTATTGGACATTGTGATACAGGAACTGTTTCCAGAGCTCAATAAGGTACAAAAGG 2812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 CAAGCAGCTGACTTATGTTTTATTGGACATTGTGATACAGGAACTGTTTCCAGAGCTCAATAAGGTACAAAAGG 1657
Query 2813 AAGTTACCTCTGTGACATCTTGGATG 2838
||||||||||||||||||||||||||
Sbjct 1658 AAGTTACCTCTGTGACATCTTGGATG 1683
