Construct: ORF ccsbBroadEn_08720

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004036.1_s300c1, BRDN0000390762
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNX14 (57231)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57231 SNX14 sorting nexin 14 NM_153816.6 99.8% 99.7% (many diffs)
2 human 57231 SNX14 sorting nexin 14 NM_001350533.1 99.7% 99.6% (many diffs)
3 human 57231 SNX14 sorting nexin 14 NM_001297614.2 98.8% 98.8% (many diffs)
4 human 57231 SNX14 sorting nexin 14 NM_001350534.1 98.7% 98.7% (many diffs)
5 human 57231 SNX14 sorting nexin 14 NM_001350535.1 98.5% 98.5% (many diffs)
6 human 57231 SNX14 sorting nexin 14 NM_001350532.1 97.6% 97.6% (many diffs)
7 human 57231 SNX14 sorting nexin 14 NM_001350536.1 95.1% 95.1% (many diffs)
8 human 57231 SNX14 sorting nexin 14 NM_001350537.1 95% 95% (many diffs)
9 human 57231 SNX14 sorting nexin 14 NM_001350538.1 94.7% 94.7% (many diffs)
10 human 57231 SNX14 sorting nexin 14 NM_001304479.1 94.3% 94.2% (many diffs)
11 human 57231 SNX14 sorting nexin 14 NM_001350539.1 94.2% 94.1% (many diffs)
12 human 57231 SNX14 sorting nexin 14 NM_020468.5 94.2% 94.1% (many diffs)
13 human 57231 SNX14 sorting nexin 14 XM_017011090.1 94.2% 94.1% (many diffs)
14 human 57231 SNX14 sorting nexin 14 NM_001350540.1 94% 93.9% (many diffs)
15 human 57231 SNX14 sorting nexin 14 NM_001350541.1 93% 93% (many diffs)
16 human 57231 SNX14 sorting nexin 14 NM_001350542.1 89.6% 89.6% (many diffs)
17 human 57231 SNX14 sorting nexin 14 NM_001350543.1 89.5% 89.5% (many diffs)
18 human 57231 SNX14 sorting nexin 14 XM_024446498.1 89.5% 89.5% (many diffs)
19 human 57231 SNX14 sorting nexin 14 NM_001350544.1 89.2% 89.2% (many diffs)
20 human 57231 SNX14 sorting nexin 14 XM_011535977.2 89% 88.1% (many diffs)
21 human 57231 SNX14 sorting nexin 14 NM_001350545.1 84.2% 83.7% (many diffs)
22 human 57231 SNX14 sorting nexin 14 NM_001350546.1 84.2% 83.7% (many diffs)
23 human 57231 SNX14 sorting nexin 14 NR_146775.1 74% (many diffs)
24 human 57231 SNX14 sorting nexin 14 NR_146774.1 73.9% (many diffs)
25 human 57231 SNX14 sorting nexin 14 NR_146778.1 70.7% (many diffs)
26 human 57231 SNX14 sorting nexin 14 NR_146779.1 70.6% (many diffs)
27 human 57231 SNX14 sorting nexin 14 NR_146777.1 70.6% (many diffs)
28 human 57231 SNX14 sorting nexin 14 NR_146776.1 67.4% (many diffs)
29 human 57231 SNX14 sorting nexin 14 NM_001350547.1 62.8% 63% (many diffs)
30 human 57231 SNX14 sorting nexin 14 NM_001350548.1 59.2% 59.3% 0_1ins1155;117A>G;1312C>T
31 human 57231 SNX14 sorting nexin 14 NM_001350549.1 59.2% 59.3% 0_1ins1155;117A>G;1312C>T
32 human 57231 SNX14 sorting nexin 14 NM_001350550.1 59.2% 59.3% 0_1ins1155;117A>G;1312C>T
33 human 57231 SNX14 sorting nexin 14 NM_001350551.1 59.2% 59.3% 0_1ins1155;117A>G;1312C>T
34 human 57231 SNX14 sorting nexin 14 NM_001350552.1 59.2% 59.3% 0_1ins1155;117A>G;1312C>T
35 human 57231 SNX14 sorting nexin 14 XM_024446499.1 59.2% 59.3% 0_1ins1155;117A>G;1312C>T
36 human 57231 SNX14 sorting nexin 14 NM_001350553.1 58.2% 58.3% (many diffs)
37 mouse 244962 Snx14 sorting nexin 14 NM_172926.3 86.7% 93.6% (many diffs)
38 mouse 244962 Snx14 sorting nexin 14 XM_006511183.3 83.9% 90.6% (many diffs)
39 mouse 244962 Snx14 sorting nexin 14 XR_001778903.1 57.4% (many diffs)
40 mouse 244962 Snx14 sorting nexin 14 XR_001778902.1 28.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2904
ORF length:
2838
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT GCCCTGGGTG CGGACGATGG GGCAGAAGCT GAAGCAGCGG CTGCGACTGG
121ACGTGGGACG CGAGATCTGC CGCCAGTACC CGCTGTTCTG CTTCCTGCTG CTCTGTCTCA
181GCGCCGCCTC CCTGCTTCTT AACAGGTATA TTCATATTTT AATGATCTTC TGGTCATTTG
241TTGTTGGAGT TGTCACATTC TACTGCTCAC TAGGACCTGA TTCTCTCTTA CCAAATATAT
301TCTTCACAAT AAAATACAAA CCCAAGCAGT TAGGACTTCA GGAATTATTT CCTCAAGGTC
361ATAGCTGTGC TGTTTGTGGT AAAGTGAAAT GTAAACGACA TAGGCCTTCT TTGCTACTTG
421AAAACTACCA GCCATGGCTA GACCTGAAAA TTTCTTCCAA GGTTGATGCA TCTCTCTCAG
481AGGTTCTTGA ATTAGTGTTG GAAAACTTTG TTTATCCGTG GTACAGGGAT GTGACAGATG
541ATGAATCCTT TGTTGATGAA CTGAGAATAA CATTACGTTT TTTTGCATCT GTCTTAATAA
601GAAGGATTCA CAAGGTGGAT ATTCCATCTA TTATAACCAA GAAACTATTA AAAGCAGCAA
661TGAAGCATAT AGAAGTGATA GTTAAAGCCA GACAGAAAGT AAAAAATACA GAGTTTTTAC
721AGCAAGCTGC TTTAGAAGAA TATGGTCCAG AGCTTCATGT TGCTTTGAGA AGTCGAAGAG
781ATGAATTGCA CTATTTAAGG AAACTTACTG AACTGCTTTT TCCTTATATT TTGCCTCCTA
841AAGCAACAGA CTGCAGATCT CTGACCTTAC TTATAAGAGA GATTCTGTCT GGCTCTGTGT
901TCCTTCCTTC TTTGGATTTC CTAGCTGATC CAGATACTGT GAATCATTTG CTTATCATCT
961TCATAGATGA CAGTCCACCT GAAAAAGCAA CTGAACCGGC TTCTCCTTTG GTTCGATTCT
1021TGCAGAAATT TGCAGAACCT AGAAATAAAA AGCCATCTGT GCTGAAGTTA GAATTGAAGC
1081AAATCAGAGA GCAACAAGAT CTTTTATTTC GTTTTATGAA CTTCCTGAAA CAAGAAGGCG
1141CAGTGCACGT GTTGCAGTTT TGTTTGACTG TGGAGGAATT TAATGATAGA ATTTTACGAC
1201CAGAATTATC AAATGATGAA ATGCTGTCTC TTCATGAAGA ATTGCAGAAG ATTTATAAAA
1261CATACTGTTT GGATGAAAGT ATTGACAAAA TTAGATTTGA TCCCTTCATT GTAGAAGAGA
1321TTCAAAGAAT TGCTGAGGGC CCATACATAG ATGTTGTGAA ACTTCAAACT ATGAGATGTC
1381TTTTTGAAGC ATATGAACAT GTTCTTTCCC TTTTGGAGAA TGTATTTACT CCTATGTTCT
1441GCCATAGTGA TGAGTATTTC AGACAACTTT TAAGAGGTGC AGAATCACCA ACACGCAATT
1501CAAAATTGAA CAGAGGTAGC CTAAGTTTGG ATGATTTTCG GAACACACAG AAAAGGGGAG
1561AATCATTTGG AATCAGCAGA ATAGGTAGCA AAATTAAAGG AGTATTCAAA AGTACCACAA
1621TGGAGGGAGC TATGTTGCCT AATTATGGTG TAGCTGAAGG TGAAGATGAT TTTATTGAAG
1681AAGGTATTGT TGTAATGGAA GATGATTCTC CAGTGGAGGC TGTGAGCACA CCTAATACTC
1741CCCGAAACCT TGCTGCATGG AAAATTAGCA TTCCATATGT AGACTTTTTT GAGGATCCCT
1801CCTCTGAAAG GAAGGAGAAA AAAGAAAGAA TTCCTGTGTT TTGTATTGAT GTTGAAAGAA
1861ATGATAGAAG AGCAGTTGGA CACGAGCCTG AACATTGGTC TGTCTATAGA AGATATCTTG
1921AATTCTATGT ACTTGAATCA AAACTAACAG AATTTCATGG TGCATTTCCT GATGCCCAGC
1981TTCCTTCTAA GAGGATCATT GGCCCCAAAA ATTATGAATT CTTAAAGTCA AAGAGGGAAG
2041AGTTCCAAGA ATATCTACAG AAACTTCTGC AGCATCCAGA ACTGAGTAAT AGTCAACTTC
2101TGGCAGACTT TCTTTCCCCT AATGGTGGGG AAACACAATT TCTTGATAAG ATACTACCAG
2161ATGTAAATCT TGGGAAAATT ATAAAATCTG TTCCTGGAAA ACTAATGAAA GAGAAAGGTC
2221AGCATTTGGA ACCTTTTATC ATGAATTTCA TTAATTCTTG TGAGTCTCCA AAGCCTAAAC
2281CAAGTAGACC AGAACTGACC ATTCTCAGCC CTACTTCAGA AAACAACAAG AAGCTTTTCA
2341ATGATCTGTT TAAAAATAAT GCAAACCGTG CTGAAAATAC AGAGAGAAAG CAAAATCAGA
2401ATTATTTTAT GGAGGTGATG ACTGTAGAAG GAGTCTATGA TTACCTGATG TATGTAGGAC
2461GGGTAGTTTT CCAGGTTCCT GACTGGCTTC ATCATCTCTT AATGGGAACT CGAATCCTCT
2521TTAAAAACAC CTTGGAAATG TATACTGATT ACTATCTTCA GTGTAAACTA GAACAGCTAT
2581TTCAGGAGCA CCGTTTGGTC TCACTCATAA CACTTCTCAG AGATGCTATA TTCTGTGAAA
2641ACACTGAACC TCGCTCTCTC CAAGATAAGC AAAAAGGAGC AAAACAGACT TTTGAAGAAA
2701TGATGAATTA CATTCCAGAT CTGTTAGTCA AGTGTATTGG TGAAGAAACC AAGTATGAAA
2761GCATCAGACT TCTGTTTGAT GGCTTACAGC AACCAGTACT CAACAAGCAG CTGACTTATG
2821TTTTATTGGA CATTGTGATA CAGGAACTGT TTCCAGAGCT CAATAAGGTA CAAAAGGAAG
2881TTACCTCTGT GACATCTTGG ATGTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa
2941agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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