Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08875
- Subject:
- XR_001738901.2
- Aligned Length:
- 3501
- Identities:
- 2110
- Gaps:
- 1389
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTAACGGTGGTGGCTGGTTCTGCGCCGGATCCGGGAGAGGGGCGGGCGCCATTGTGCTTCGCTGCCGACTGC 74
Query 1 ----------------------------------------------------------ATGGAGTCTAAACCTT 16
||||||||||||||||
Sbjct 75 ATTTCCTCAGTCACGGGCCTAGAACTCCAAGGAGAAAGGCGGCGAAAAATCTTTAAGAATGGAGTCTAAACCTT 148
Query 17 CAAGGATTCCAAGAAGAATTTCTGTTCAACCTTCCAGCTCCTTAAGTGCTAGGATGATGTCTGGAAGCAGAGGA 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CAAGGATTCCAAGAAGAATTTCTGTTCAACCTTCCAGCTCCTTAAGTGCTAGGATGATGTCTGGAAGCAGAGGA 222
Query 91 AGTAGTTTAAATGATACCTATCACTCAAGAGACTCTTCATTTAGATTGGATTCTGAATATCAGTCTACATCAGC 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AGTAGTTTAAATGATACCTATCACTCAAGAGACTCTTCATTTAGATTGGATTCTGAATATCAGTCTACATCAGC 296
Query 165 ATCAGCATCTGCGTCACCATTTCAATCTGCATGGTATAGTGAATCTGAGATAACTCAGGGAGCACGCTCAAGAT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATCAGCATCTGCGTCACCATTTCAATCTGCATGGTATAGTGAATCTGAGATAACTCAGGGAGCACGCTCAAGAT 370
Query 239 CGCAGAACCAGCAACGGGATCATGATTCAAAAAGACCTAAACTTTCCTGTACAAACTGTACTACCTCAGCTGGG 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CGCAGAACCAGCAACGGGATCATGATTCAAAAAGACCTAAACTTTCCTGTACAAACTGTACTACCTCAGCTGGG 444
Query 313 AGAAATGTTGGAAATGGTTTAAACACATTATCAGATTCATCTTGGAGGCATAGTCAAGTTCCTAGATCTTCATC 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGAAATGTTGGAAATGGTTTAAACACATTATCAGATTCATCTTGGAGGCATAGTCAAGTTCCTAGATCTTCATC 518
Query 387 AATGGTACTTGGATCATTTGGAACAGACTTAATGAGAGAGAGGAGAGATTTGGAGAGAAGAACAGATTCCTCTA 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AATGGTACTTGGATCATTTGGAACAGACTTAATGAGAGAGAGGAGAGATTTGGAGAGAAGAACAGATTCCTCTA 592
Query 461 TTAGTAATCTTATGGATTATAGTCACCGAAGTGGTGATTTCACAACTTCATCATATGTTCAAGACAGAGTTCCT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTAGTAATCTTATGGATTATAGTCACCGAAGTGGTGATTTCACAACTTCATCATATGTTCAAGACAGAGTTCCT 666
Query 535 TCATATTCACAAGGAGCAAGACCAAAAGAAAACTCAATGAGCACTTTACAGTTGAATACATCATCCACAAACCA 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCATATTCACAAGGAGCAAGACCAAAAGAAAACTCAATGAGCACTTTACAGTTGAATACATCATCCACAAACCA 740
Query 609 CCAATTGCCTTCTGAACATCAGACCATACTAAGTTCTAGGGATTCCAGAAATTCTTTAAGATCAAATTTTTCTT 682
||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 741 CCAATTGCCTTCTGAACATCAGACCATACTAAGTTCTAGGGACTCCAGAAATTCTTTAAGATCAAATTTTTCTT 814
Query 683 CAAGAGAATCAGAATCTTCCCGAAGCAATACGCAGCCTGGATTTTCTTACAGTTCAAGTAGAGATGAAGCCCCA 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CAAGAGAATCAGAATCTTCCCGAAGCAATACGCAGCCTGGATTTTCTTACAGTTCAAGTAGAGATGAAGCCCCA 888
Query 757 ATCATAAGCAATTCAGAAAGGGTTGTTTCATCTCAAAGACCATTTCAAGAATCTTCTGACAATGAAGGTAGGCG 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ATCATAAGCAATTCAGAAAGGGTTGTTTCATCTCAAAGACCATTTCAAGAATCTTCTGACAATGAAGGTAGGCG 962
Query 831 GACAACGAGGAGATTGCTGTCACGCATAGCTTCTAGCATGTCATCTACTTTTTTTTCACGAAGATCTAGTCAGG 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GACAACGAGGAGATTGCTGTCACGCATAGCTTCTAGCATGTCATCTACTTTTTTTTCACGAAGATCTAGTCAGG 1036
Query 905 ATTCCTTGAATACAAGATCATTGAATTCTGAAAATTCTTACGTTTCTCCAAGAATCTTGACAGCTTCACAGTCC 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ATTCCTTGAATACAAGATCATTGAATTCTGAAAATTCTTACGTTTCTCCAAGAATCTTGACAGCTTCACAGTCC 1110
Query 979 CGTAGTAATGTACCATCAGCTTCTGAAGTTCCCGATAATAGGGCATCTGAAGCTTCTCAGGGATTTCGATTTCT 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CGTAGTAATGTACCATCAGCTTCTGAAGTTCCCGATAATAGGGCATCTGAAGCTTCTCAGGGATTTCGATTTCT 1184
Query 1053 TAGGCGAAGATGGGGTTTGTCATCTCTTAGCCACAATCATAGCTCTGAGTCAGATTCAGAAAATTTTAACCAAG 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TAGGCGAAGATGGGGTTTGTCATCTCTTAGCCACAATCATAGCTCTGAGTCAGATTCAGAAAATTTTAACCAAG 1258
Query 1127 AATCTGAAGGTAGAAATACAGGACCATGGTTATCTTCCTCACTTAGAAATAGATGCACACCTTTGTTCTCTAGA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AATCTGAAGGTAGAAATACAGGACCATGGTTATCTTCCTCACTTAGAAATAGATGCACACCTTTGTTCTCTAGA 1332
Query 1201 AGGAGGCGAGAGGGAAGAGATGAATCTTCAAGGATACCTACCTCTGATACATCATCTAGATCTCATATTTTTAG 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AGGAGGCGAGAGGGAAGAGATGAATCTTCAAGGATACCTACCTCTGATACATCATCTAGATCTCATATTTTTAG 1406
Query 1275 AAGAGAATCAAATGAAGTGGTTCACCTTGAAGCACAGAATGATCCTCTTGGAGCTGCTGCCAACAGACCACAAG 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AAGAGAATCAAATGAAGTGGTTCACCTTGAAGCACAGAATGATCCTCTTGGAGCTGCTGCCAACAGACCACAAG 1480
Query 1349 CATCTGCAGCATCAAGCAGTGCCACAACAGGTGGCTCTACATCAGATTCGGCTCAAGGTGGAAGAAATACAGGA 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CATCTGCAGCATCAAGCAGTGCCACAACAGGTGGCTCTACATCAGATTCGGCTCAAGGTGGAAGAAATACAGGA 1554
Query 1423 ATATCAGGGATTCTTCCTGGTTCCTTATTCCGGTTTGCAGTCCCCCCAGCACTTGGGAGTAATTTGACCGACAA 1496
||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||
Sbjct 1555 ATATCAGGGATTCTTCCTGGTTCCTTATTCCGGTTTGCAGTCCCTCCAGCACTTGGGAGTAATTTGACCGACAA 1628
Query 1497 TGTCATGATCACAGTAGATATTATTCCTTCAGGTTGGAATTCAGCTGATGGTAAAAGTGATAAAACTAAAAGTG 1570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TGTCATGATCACAGTAGATATTATTCCTTCAGGTTGGAATTCAGCTGATGGTAAAAGTGATAAAACTAAAAGTG 1702
Query 1571 CGCCTTCAAGAGATCCAGAAAGATTGCAGAAAATAAAAGAGAGCCTCCTTTTAGAGGACTCAGAAGAAGAAGAA 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CGCCTTCAAGAGATCCAGAAAGATTGCAGAAAATAAAAGAGAGCCTCCTTTTAGAGGACTCAGAAGAAGAAGAA 1776
Query 1645 GGTGACTTATGTAGAATTTGTCAAATGGCAGCTGCATCATCATCTAATTTGCTGATAGAGCCATGCAAGTGCAC 1718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GGTGACTTATGTAGAATTTGTCAAATGGCAGCTGCATCATCATCTAATTTGCTGATAGAGCCATGCAAGTGCAC 1850
Query 1719 AGGAAGTTTGCAGTATGTCCACCAAGACTGTATGAAAAAGTGGTTACAGGCCAAAATTAACTCTGGTTCTTCAT 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 AGGAAGTTTGCAGTATGTCCACCAAGACTGTATGAAAAAGTGGTTACAGGCCAAAATTAACTCTGGTTCTTCAT 1924
Query 1793 TAGAAGCTGTAACCACCTGTGAACTATGTAAAGAGAAGTTGGAGCTTAACCTGGAGGATTTTGATATTCATGAA 1866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TAGAAGCTGTAACCACCTGTGAACTATGTAAAGAGAAGTTGGAGCTTAACCTGGAGGATTTTGATATTCATGAA 1998
Query 1867 CTACATAGAGCTCATGCAAATGAACAA-----------------------GCTGAGTATGAGTTTATCAGCTCT 1917
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1999 CTACATAGAGCTCATGCAAATGAACAAGTTAGTATATTTTGCCTAATTTGGCTGAGTATGAGTTTATCAGCTCT 2072
Query 1918 GGTCTCTACCTAGTGGTGTTATTGCACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACAAATGAACC 1991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 GGTCTCTACCTAGTGGTGTTATTGCACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACAAATGAACC 2146
Query 1992 AAGCACACGTGTCCGATTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAACTTCAGAGG 2065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 AAGCACACGTGTCCGATTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAACTTCAGAGG 2220
Query 2066 ATGATTCCGAAGAAGACGGAGACCATAACAGGACATTTGATATTGCC--------------------------- 2112
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 ATGATTCCGAAGAAGACGGAGACCATAACAGGACATTTGATATTGCCTAACTTCATATAAGACAGATGGATGAT 2294
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2295 CTGTGAACATAAGTGTTTATTAAAAATGGCAATTAAATATAAATTACTTTTGTGGGGGAATGCCTAATAAATAC 2368
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2369 ATTGACTATATATAAAATGAATATATACATACACATGTATGCCTGTATATATATATTCATTCTCCAGTGTTGCT 2442
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2443 GAATTAAAATTCTGCTGGACTTTTTAACATAGCAAATCCGATGTTTATAAACTGGTAATCAAAAAGGTTTTTTC 2516
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2517 TTTTAGGTGAGTGGGAAAGTATTACCCTTGTTTTAAATATCTAAGCAATGCCTATCAACCCTTTTTTGTGTTAT 2590
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2591 GATTACTGTAGTCATATTTATGAAAAAAGGTTTGTGTTTTACTCTTGCTAGTGAGAAAAGTGGGACAAAATATA 2664
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2665 CTTTTGAAATAAAATGCTATATGGCACCTAATTATTTTTTCTTTTAAAATGCCTTAAGTTGCAGTCTCATTTTG 2738
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2739 ATAATCATTTGCTTCCAGTGTTTAAAAATTAAAAAAAGAATGGGGAGAAGGTTATGAGAAGAGCATTATTAAGT 2812
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2813 TTCCAAATTTAATTTGAATTCCAAATTCACCTAGCAATAAAATCTAATTTTTAAAAAGTATATAAATATAAAAT 2886
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2887 GTATAAATGATGGATAGATTTTTGTATTGATTTGCAAAATGCAGATTATATTTGATAGGCTATAGTATGTAGAT 2960
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2961 ATTCCTTTTAGGAATATTACAGCTGTAAATTATATGAGACTTGCCAGTCAAATGCTATTTGGTTTAAAAAAATT 3034
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3035 ATTGCAATCTCAAGTTAATGGAATATTTTTAAATCCCACATTCAGAGTTTAAAACACTGGTTTTCAATGTGTTT 3108
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3109 TTTAGTGTTGTCACTTGTTTATAGATAAATATATAAATAACCTGTTTGGATCCTGGTCCTTTTTAACTGTTCCT 3182
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3183 TGGTAATTCTGAGCATTTATTTGATGACTTAATATTTTTCACTACCTTTGGAGAACAGATGAACATTATTCACC 3256
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3257 ATGAATGGATCTATACTGTGTGGTCATGAGTTGTGTATACTTCCATAACACTGTATTTTTCTTCTGTCAGTACC 3330
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3331 CTTAGGATACACTTTAAAACACCTTAAGGTCTGATGTTATGGCAACAAACTACTTTTTCAAACCTAAATAGGAA 3404
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3405 CCATGTAATTTCTCAAAAGTGATTGAACAGTTTGCCCACACTTAGTTTGTTGGTCTTATGTAAAACATTGGCTC 3478
Query 2113 ----------------------- 2112
Sbjct 3479 AAAATAAAGTACACACTGATTTA 3501
