Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08936
- Subject:
- XR_001747959.2
- Aligned Length:
- 5545
- Identities:
- 1100
- Gaps:
- 4441
Alignment
Query 1 --------------------------------ATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGG 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGCGTCTGCACCTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGG 74
Query 43 CTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGAC 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGAC 148
Query 117 ACCTG-------------------------------------------------AAGGAAAATTGGGCCGATTT 141
||||| ||||||||||||||||||||
Sbjct 149 ACCTGAAGAAAACTAAGAGTGAGAACTGACAAAAAGCCATTGGATTTGACGGTTAAGGAAAATTGGGCCGATTT 222
Query 142 CCACCTATGATGCATCATCACCAGGCACACTCAGATGGCCAGACTCCTGGGGCTCGTTTCCAGAGGTCTCACCT 215
||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCACCTATGATGCATCATCACCAGGCACCCTCAGATGGCCAGACTCCTGGGGCTCGTTTCCAGAGGTCTCACCT 296
Query 216 TGCCGAGGCATTTGCAAAGGCCAAAGGATCAGGTGGAGGTGCTGGAGGAGGAGGTAGTGGAAGAGGTCTGATGG 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGCCGAGGCATTTGCAAAGGCCAAAGGATCAGGTGGAGGTGCTGGAGGAGGAGGTAGTGGAAGAGGTCTGATGG 370
Query 290 GGCAGATTATTCCGATCTACGGTTTTGGGATTTTTTTATATATACTGTACATTCTATTTA-------------- 349
|||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGCAGATTATTCCAATCTACGGTTTTGGGATTTTTTTATATATACTGTACATTCTATTTAAGGTAAGTAGAATC 444
Query 350 -------------------------------------------------------------------------- 349
Sbjct 445 ATCCTAATCATATTACATCAATGAAAATCTAATATGGCAATAAAAATCATTGTCTACATTAAAACTTCTTATAG 518
Query 350 -------------------------------------------------------------------------- 349
Sbjct 519 TTCATAAAATTATTTCAAATCCATCATCTCTTTAAATCCTGCCTCCTCTTCATGAGGTACTTAGGATAGCCATT 592
Query 350 -------------------------------------------------------------------------- 349
Sbjct 593 ATTTCAGTTTCACATAAGAAATGTTTACTCAATGTTTAAGTGTTTTGCCCCAAAATTCACAACTAACAAGGCAG 666
Query 350 -------------------------------------------------------------------------- 349
Sbjct 667 AACTAGGACTTGAACATGGATCTTTTGGTTCTTAATCCAGTGAGTGATACAATTCAATGCACTCCCCTGCCAAA 740
Query 350 -------------------------------------------------------------------------- 349
Sbjct 741 AAAAAAAAAAAAAAAAAAAAAATTAACATCTTTACAGGCCGAAAAGGAATAAAGATTTTCTAAGAAGAGCTTTT 814
Query 350 -------------------------------------------------------------------------- 349
Sbjct 815 ATTATTGGGATTGGCACAGTGATTTCCAAATAGCCATTGTAAGGCCAAATAATGACACCACTTTATCCTGCTTG 888
Query 350 -------------------------------------------------------------------------- 349
Sbjct 889 TTTCTCCACAGGAATTTGAGATGCTGTTTTTAATATTATCTCCAATAATTCTCCTGAGACAGAACTGTCCCTCC 962
Query 350 -------------------------------------------------------------------------- 349
Sbjct 963 TGAAATTAAGCCTGATATTTCCTAGCTCTGGGGAGACATGGGTGTAGGTTCTTTAAAGCAGACCCCCAGTTGAG 1036
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1037 TTCCACCTCCAGGCAGGCCTTTGCAGGCCCCTGGCCCCTGTACTGTGAATTAGAGGCAGAAGACTCACTTTGCC 1110
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1111 CTCCTGTCTAGAGTAAGCTTAAATAAGATGAGTTCTTTCTCGCCCAGGAATTCTGCAGGCAGTCTGAGTTGAGT 1184
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1185 CTGTAAGAATGCCCATAGGGTGCCACACATCCCTTTTAGATGAGCATGAGCAAGGAAGATGACCTGTAGGGAGA 1258
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1259 TTTTTTTTCCCTTGTGTTAGAAATGCTTGTTCTCTGGTGCCATAAAGAAGCAGCACTTGGACGTACATTTAATT 1332
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1333 TCCTCAGCAAGGCCATTTTTACTTTCTGCAGAAAGGGTACACTCACCAGCGGTTTTGCCGTGAGAGTACACCGA 1406
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1407 ACAAAGGAGACAGGGTCATTTATAACCTGACGCATCCACCTTACTGCTGTGTCCGGTTTCCATTGGCTGGAACG 1480
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1481 GGACCTCACATTCTGTATTTGTGCTGATTGGCTAGCGACTTAGAACTTTTTAAAAGAGGCAAAGGCAGAGGAGA 1554
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1555 ACAAAGGAAGGAGGAACTAACTTGTGGAATGCTGAGAAAGGTAAAAACACCTTCATATAAGGAAGAGGAACAGG 1628
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1629 CTATGACCTCATGCTTGCTTTGACAAGTATAAGCATGCCAGGGCAAATATTTAGGCTAAACTGTGGGAGCTAAG 1702
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1703 AACAGTTGATTTCTTTATTATGGCTAGCAGATATCTAAGCATGTTAGCACAGGTTCTTGAATAAATTTTGCTTC 1776
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1777 TAAGAGAAGTTACTATTCCTAATTATATGGGGAGTAAAGTCTCTTTGAAGAGGAATCTCTACTTTACTTTTTAC 1850
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1851 ACTTGTGCTTTGATAATTTTTTACTTGGAAACCTCATCTTTTGGCGTTTTTTTTTTTGAGCTATTTCTCTAGTG 1924
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1925 TTGCTATTTGATTTAATTTCTGACCTTCATTTTTGTTTCCCAACCTTTTTTTTTTGTTTGATATGAGGGGTTCC 1998
Query 350 ---------------------------------------------------AGCTCTCAAAGGGGAAAACAACT 372
|||||||||||||||||||||||
Sbjct 1999 GTGACTGAGGTTCTGAGCTGCTGTTGATGTGCTATACCTCCTTCAATTCTCAGCTCTCAAAGGGGAAAACAACT 2072
Query 373 GCAGAGGATGGGAAATGCTATACTGCCATGCCTGGAAACACCCACAGGAAAATTACCAGTTTTGAGCTTGCTCA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 GCAGAGGATGGGAAATGCTATACTGCCATGCCTGGAAACACCCACAGGAAAATTACCAGTTTTGAGCTTGCTCA 2146
Query 447 ACTGCAAGAAAAACTGAAGGAGACAGAAGCAGCCATGGAAAAATTATTCAACAGAGTGGGACCTAATGGTGAG- 519
||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 2147 ACTGCAAGAAAAACTGAAGGAGACAGAAGCAGCCATGGAAAAATTAATCAACAGAGTGGGACCTAATGGTGAGA 2220
Query 520 -------------------------------------------------------------------------- 519
Sbjct 2221 GATCAGAATGCCCTGCGTACAGTCTGGAAAAGTAACATGTGCCGCCTGAAGAGACAAGAGTTTGTGATAAGCAG 2294
Query 520 -AGAGCACAGACTGTGACTTCTGACCAAGAGAAACGGTTGCTACATCAGCTCCGAGAAATCACCAGGGTCATGA 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 CAGAGCACAGACTGTGACTTCTGACCAAGAGAAACGGTTGCTACATCAGCTCCGAGAAATCACCAGGGTCATGA 2368
Query 593 AAGAAGGAAAATTCATTGACAGATTTTCTCCAGAGAAAGAAGCTGAGGAGGCCCCTTACATGGAGGACTGGGAA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 AAGAAGGAAAATTCATTGACAGATTTTCTCCAGAGAAAGAAGCTGAGGAGGCCCCTTACATGGAGGACTGGGAA 2442
Query 667 GGTTACCCTGAAGAGACTTACCCAATTTATGACCTTTCAGACTGTATCAAGCGTAGGCAAGAAACAATCTTGGT 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 GGTTACCCTGAAGAGACTTACCCAATTTATGACCTTTCAGACTGTATCAAGCGTAGGCAAGAAACAATCTTGGT 2516
Query 741 GGATTACCCTGACCCAAAAGAACTTTCTGCTGAAGAAATAGCTGAAAGAATGGGAATGATAGAAGAGGAAGAAT 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 GGATTACCCTGACCCAAAAGAACTTTCTGCTGAAGAAATAGCTGAAAGAATGGGAATGATAGAAGAGGAAGAAT 2590
Query 815 CAGATCATTTGGGTTGGGAAAGTCTGCCCACTGACCCCAGAGCCCAGGAAGATAATTCTGTTACCTCGTGTGAT 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 CAGATCATTTGGGTTGGGAAAGTCTGCCCACTGACCCCAGAGCCCAGGAAGATAATTCTGTTACCTCGTGTGAT 2664
Query 889 CCAAAGCCAGAAACATGTTCCTGCTGTTTTCATGAAGACGAGGATCCTGCTGTCTTGGCAGAGAATGCTGGATT 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 CCAAAGCCAGAAACATGTTCCTGCTGTTTTCATGAAGACGAGGATCCTGCTGTCTTGGCAGAGAATGCTGGATT 2738
Query 963 CAGTGCAGATAGCTACCCTGAGCAAGAGGAAACCACCAAAGAAGAGTGGTCCCAAGACTTTAAAGATGAAGGGT 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 CAGTGCAGATAGCTACCCTGAGCAAGAGGAAACCACCAAAGAAGAGTGGTCCCAAGACTTTAAAGATGAAGGGT 2812
Query 1037 TGGGCATCAGCACAGATAAAGCATATACAGGCAGCATGCTGAGGAAGCGTAACCCCCAGGGTTTAGAG------ 1104
|||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 TGGGCATCAGCACCGATAAAGCATATACAGGCAGCATGCTGAGGAAGCGTAACCCCCAGGGTTTAGAGTGAAAA 2886
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2887 CAGCCAGTCTGAAGTATCCATTACTCAAGTCCCAAGATGGGACCACTCAGGGGCAAAGGTCTGACTCTTCCTGG 2960
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2961 TAGGTGTAACAGATAGTTCACCTGTGAACGAACATCAGCTTACAGATGATGAGGACTTAAGGTTGCAAGAATGA 3034
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3035 AGATTTCAGACTCCAAGATCCCTTATTCTTTGGGCCTTGAGCAGAATATCCTGTATGCGCTATTTCCCACCAGA 3108
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3109 GGCAGAGGCCACAGGAGATAGGCCATGGTTCAGGTAGGAAATGCTCTTGGTCACATCAGAACTCTAGATCTGGG 3182
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3183 GGAATAAACAAACCCGAATTATTACCACACTCTCAAAGTTCTCTTCAATCTGGACTATTTGTATTCCAAAGAAA 3256
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3257 AATTTAGTGCTTTAGCTATTCAGCAATATTGAGAAAAAACATGAACACATTTATGACTTTGCCTTGACCATTGA 3330
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3331 CTTTTCTAAAATGTGCTTCCTTTTCCTTTATTTCCCTTTTTTTATACAAAGAAAATAGCCCAAATTTCTCCTCT 3404
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3405 TAGGTCATTCCTTAACCTCTCAGAGAACCAGTTTCCCCATGAATTGGGAATAATGCTCTATTTACAGGGCTGTT 3478
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3479 TGGATTAAATAAGATGCTGTTTATAAAGTGTCTGTGCCAGGGCAAAGCATGTGGTAGGTGCTTGGTGACAGCAT 3552
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3553 GATCCCTGTCACCACTCTGTCAAGTCCAGTGTTGCTGAGATGTCACACCTGACACCCTCTAAGGCTACCCTGAT 3626
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3627 TGCCAGGAGTGGCCCAGGGCCCTTCTGCAGTCTCCGGGTGCCTTTAGTTATAACCTCTTGTCTGGGTCAGACCA 3700
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3701 TTAGCTTTCATGTCTGCTTCTAGCTACAACTGTAGCCTCCCTTCCTTTTGCCTTCAAATCTGCCACAGCTGCCC 3774
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3775 GGCAACAAAAAAAGATTCCTAAGCATCTCGAGGTCCTGTTTAAATGGGTTAGGGTCCAAGCAAGCCCTGAGACA 3848
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3849 TCAAGTGGTTGGGTCTTTTATACCTTTTTCATCTCTACAGCCCTGTTCTCTTCCTAAGGCCAGGCCCACAGGGG 3922
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3923 ATACTGAGGAACCACCAGCCCCTTCAGGCGGCACAGCAGACCCTGAAGAGAACTGCTCTAACTTAAGTACCTTC 3996
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3997 TGACTTCACCATTTTTCCAGCCTCTGGGTGTGGTTCTGATGAACCTTAAACTTGAAAGGCACAGGCCAGAGGAA 4070
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4071 GGACAGTGTTGACCCACATGTCATTGGTGAGGTTATGATCTCTTTGCTATTATCACCTACTTACCCACCTGAGG 4144
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4145 CTCCTAGGAAACAATGAATGAAAGGTATAGAAAAAAATTAGGAAGTAAACAGGGCTTTTTTCCCCTTTATGAAA 4218
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4219 AAAGTACACAGAAGTGTTGAAACGATTCAAGTTTAATTTGTTGATATATGTGTGTACTTAGACAAACACTAAAT 4292
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4293 TCTACAACATACATAATGTCAACATGGGAAAATACCAAGTTTGTCATTGCACATACCAATAAATAAATACATTT 4366
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4367 GCTCCAGAATACCAAAGTTTATTCAAAAAGTCAATAAAAGCACAGTTTTGCAAATTTGTCTAAAACGCCAGATA 4440
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4441 ATCTTGAACAAAAATAAAATGTCTGACCACTCCAAAATAGGAAAAGACAATCTTGTGCAAATAGACATACACAG 4514
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4515 TCTAGGCATTGTGAAAACTGGCTGTGTTCCCAGCAAGAGATACTGCACCCTCCTGACCGAGCAGTCAGGCTTCC 4588
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4589 CTTTCCTAGCCATCCTAAGTTGCGTTCTAGGAAACTCTGGATCTCAGCCTCATCTCCAGCTTTGCCTGGACCTT 4662
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4663 GCTAGGGGGAGGGAGGGACAGGAGCACAGAGGAGGAGAGGAGAGGGATGTGATGTCTTTCTTAGGAAAGAAAAA 4736
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4737 AAGGCACAGTGATGAGCTATAAAGGTAGTGATGAGAGCTATAAAGGTAGTGATGAAAGCAAGGAATAATTTTCA 4810
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4811 TTCACCCCAAATCCTACGGCAAGCTTTGACAATGTAACATCTTTATCTTGTGGTTAGGAAAATGGACCTAGAGA 4884
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4885 GATTATGTGGTTTGCTCAAAATCACATAGCTACTAAGTGCAGTAGTGCTTTCTATAAGACCAACTTGCCTTTCC 4958
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4959 ACTTGGTTGGAAAATTTAAAAACCAAACCTGTCGTAATCTATCTGTTCTGCCCCTCCCGCCTGTATCATGAGAT 5032
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5033 GACTGAAAATTCCAGGTGGCCATAAACTCAAACAAGAGCCTAGCCCTTGGCTTATTACCGGTGGCTACTACAAA 5106
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5107 CCTACAGACCAGAGCCCAGGGTAGTATAGAGTCCCAACTCTGGGCCCTGACTGCAGGTCATTCAGGTCCCAGTC 5180
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5181 ACAGTGAAAGCAGACTCATTCAGCTATCTGGAGAAGTGTAATCTGAGGGCCACTTGGCATCCTGAGTTAACACA 5254
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5255 GGGATGCCGCAGCTGGGGTAAGGAATTAGAGAAGGGAAGGCCAGTGTTACTGCAGTAAGAGAAAACCAGGAAGT 5328
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5329 CCATCTAGGAGATGAAATTTGTGCTTGCATAACAGAGCCATGGAAATGGCTATCCCAGCATCTCCCCTCACTGC 5402
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5403 AGACTCCATTGTAAGCAAAGCATGGACCTTTTTCTTTGAAACCAACCCTGTCACTTGTTAAATTTAGAATTACC 5476
Query 1105 --------------------------------------------------------------------- 1104
Sbjct 5477 TCTAAATGCTAAGTTTATTTAAGAGGTAAATGTCCTGCTATTTTCAGAATGGAGAAAAAAAAAAAAAAA 5545
