Construct: ORF ccsbBroadEn_08936
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006602.1_s300c1, BRDN0000389121
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RIC3 (79608)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | NM_024557.6 | 99.6% | 99.4% | (many diffs) |
| 2 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XM_006718318.4 | 99.6% | 99.4% | (many diffs) |
| 3 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | NM_001206671.4 | 99.3% | 99.1% | (many diffs) |
| 4 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XM_006718317.4 | 92.3% | 92.1% | (many diffs) |
| 5 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XM_017018287.2 | 92.3% | 92.1% | (many diffs) |
| 6 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | NM_001346692.2 | 86.3% | 86.1% | (many diffs) |
| 7 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XM_024448684.1 | 86.3% | 86.1% | (many diffs) |
| 8 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | NM_001346694.2 | 86% | 85.9% | (many diffs) |
| 9 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | NM_001346693.2 | 80% | 79.8% | (many diffs) |
| 10 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | NM_001206672.4 | 77.9% | 77.7% | (many diffs) |
| 11 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XR_930900.3 | 63.2% | (many diffs) | |
| 12 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | NM_001346690.2 | 54.3% | 53.8% | (many diffs) |
| 13 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | NM_001135109.4 | 50.7% | 50.8% | 120_121ins543;507C>A |
| 14 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XM_006718321.4 | 50.4% | 45.6% | (many diffs) |
| 15 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XM_024448685.1 | 48.3% | 47.2% | (many diffs) |
| 16 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XM_024448686.1 | 48.3% | 47.2% | (many diffs) |
| 17 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | NM_001346691.2 | 47.4% | 46.7% | (many diffs) |
| 18 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XR_001747957.2 | 43.4% | (many diffs) | |
| 19 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XR_428851.4 | 42% | (many diffs) | |
| 20 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | NR_144485.2 | 41.5% | (many diffs) | |
| 21 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XR_930896.3 | 41% | (many diffs) | |
| 22 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XR_002957193.1 | 36.2% | (many diffs) | |
| 23 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XR_930897.3 | 35.2% | (many diffs) | |
| 24 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XR_930898.3 | 35% | (many diffs) | |
| 25 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XR_002957192.1 | 28.9% | (many diffs) | |
| 26 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XR_930901.3 | 28.9% | (many diffs) | |
| 27 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XR_930903.3 | 28.4% | (many diffs) | |
| 28 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XR_428848.4 | 28.2% | (many diffs) | |
| 29 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XR_002957194.1 | 27.8% | (many diffs) | |
| 30 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XR_002957195.1 | 25% | (many diffs) | |
| 31 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XR_930904.3 | 19.8% | (many diffs) | |
| 32 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XR_001747959.2 | 19.8% | (many diffs) | |
| 33 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | XR_930905.3 | 19.6% | (many diffs) | |
| 34 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | NR_144484.2 | 17.4% | (many diffs) | |
| 35 | human | 79608 | RIC3 | RIC3 acetylcholine receptor... | NR_144497.2 | 12.2% | (many diffs) | |
| 36 | mouse | 320360 | Ric3 | RIC3 acetylcholine receptor... | NM_001311161.1 | 87% | 85.8% | (many diffs) |
| 37 | mouse | 320360 | Ric3 | RIC3 acetylcholine receptor... | NM_001038624.1 | 86.7% | 85.6% | (many diffs) |
| 38 | mouse | 320360 | Ric3 | RIC3 acetylcholine receptor... | XM_017322302.1 | 54.8% | 55.4% | (many diffs) |
| 39 | mouse | 320360 | Ric3 | RIC3 acetylcholine receptor... | NM_178780.3 | 54.6% | 55.2% | (many diffs) |
| 40 | mouse | 320360 | Ric3 | RIC3 acetylcholine receptor... | XM_006507942.2 | 48.9% | 46.6% | (many diffs) |
| 41 | mouse | 320360 | Ric3 | RIC3 acetylcholine receptor... | XM_006507943.3 | 48.9% | 46.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1170
- ORF length:
- 1104
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GTACTCCACA GTGCAGAGAG TCGCTCTGGC TTCTGGGCTT GTCCTGGCTC 121 TGTCGCTGCT GCTGCCCAAG GCCTTCCTGT CCCGCGGGAA GCGGCAGGAG CCGCCGCCGA 181 CACCTGAAGG AAAATTGGGC CGATTTCCAC CTATGATGCA TCATCACCAG GCACACTCAG 241 ATGGCCAGAC TCCTGGGGCT CGTTTCCAGA GGTCTCACCT TGCCGAGGCA TTTGCAAAGG 301 CCAAAGGATC AGGTGGAGGT GCTGGAGGAG GAGGTAGTGG AAGAGGTCTG ATGGGGCAGA 361 TTATTCCGAT CTACGGTTTT GGGATTTTTT TATATATACT GTACATTCTA TTTAAGCTCT 421 CAAAGGGGAA AACAACTGCA GAGGATGGGA AATGCTATAC TGCCATGCCT GGAAACACCC 481 ACAGGAAAAT TACCAGTTTT GAGCTTGCTC AACTGCAAGA AAAACTGAAG GAGACAGAAG 541 CAGCCATGGA AAAATTATTC AACAGAGTGG GACCTAATGG TGAGAGAGCA CAGACTGTGA 601 CTTCTGACCA AGAGAAACGG TTGCTACATC AGCTCCGAGA AATCACCAGG GTCATGAAAG 661 AAGGAAAATT CATTGACAGA TTTTCTCCAG AGAAAGAAGC TGAGGAGGCC CCTTACATGG 721 AGGACTGGGA AGGTTACCCT GAAGAGACTT ACCCAATTTA TGACCTTTCA GACTGTATCA 781 AGCGTAGGCA AGAAACAATC TTGGTGGATT ACCCTGACCC AAAAGAACTT TCTGCTGAAG 841 AAATAGCTGA AAGAATGGGA ATGATAGAAG AGGAAGAATC AGATCATTTG GGTTGGGAAA 901 GTCTGCCCAC TGACCCCAGA GCCCAGGAAG ATAATTCTGT TACCTCGTGT GATCCAAAGC 961 CAGAAACATG TTCCTGCTGT TTTCATGAAG ACGAGGATCC TGCTGTCTTG GCAGAGAATG 1021 CTGGATTCAG TGCAGATAGC TACCCTGAGC AAGAGGAAAC CACCAAAGAA GAGTGGTCCC 1081 AAGACTTTAA AGATGAAGGG TTGGGCATCA GCACAGATAA AGCATATACA GGCAGCATGC 1141 TGAGGAAGCG TAACCCCCAG GGTTTAGAGT GCCCCACTTT CTTGTACAAA GTtggcatta 1201 taagaaagca ttgcttatca atttgttgca acgaac