Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08936
- Subject:
- XR_002957194.1
- Aligned Length:
- 3956
- Identities:
- 1100
- Gaps:
- 2852
Alignment
Query 1 ---------------------------------------------------ATGGCGTACTCCACAGTGCAGAG 23
|||||||||||||||||||||||
Sbjct 1 TCCGGTTCCGGTTCCGGCTGGCGTCTGCACCTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAG 74
Query 24 AGTCGCTCTGGCTTCTGGGCTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGC 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AGTCGCTCTGGCTTCTGGGCTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGC 148
Query 98 GGCAGGAGCCGCCGCCGACACCTG-------------------------------------------------A 122
|||||||||||||||||||||||| |
Sbjct 149 GGCAGGAGCCGCCGCCGACACCTGAAGAAAACTAAGAGTGAGAACTGACAAAAAGCCATTGGATTTGACGGTTA 222
Query 123 AGGAAAATTGGGCCGATTTCCACCTATGATGCATCATCACCAGGCACACTCAGATGGCCAGACTCCTGGGGCTC 196
|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 223 AGGAAAATTGGGCCGATTTCCACCTATGATGCATCATCACCAGGCACCCTCAGATGGCCAGACTCCTGGGGCTC 296
Query 197 GTTTCCAGAGGTCTCACCTTGCCGAGGCATTTGCAAAGGCCAAAGGATCAGGTGGAGGTGCTGGAGGAGGAGGT 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTTTCCAGAGGTCTCACCTTGCCGAGGCATTTGCAAAGGCCAAAGGATCAGGTGGAGGTGCTGGAGGAGGAGGT 370
Query 271 AGTGGAAGAGGTCTGATGGGGCAGATTATTCCGATCTACGGTTTTGGGATTTTTTTATATATACTGTACATTCT 344
||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGTGGAAGAGGTCTGATGGGGCAGATTATTCCAATCTACGGTTTTGGGATTTTTTTATATATACTGTACATTCT 444
Query 345 ATTTAAGCTCTCAAAGGGGAAAACAACTGCAGAGGATGGGAAATGCTATACTGCCATGCCTGGAAACACCCACA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ATTTAAGCTCTCAAAGGGGAAAACAACTGCAGAGGATGGGAAATGCTATACTGCCATGCCTGGAAACACCCACA 518
Query 419 GGAAAATTACCAGTTTTGAGCTTGCTCAACTGCAAGAAAAACTGAAGGAGACAGAAGCAGCCATGGAAAAATTA 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGAAAATTACCAGTTTTGAGCTTGCTCAACTGCAAGAAAAACTGAAGGAGACAGAAGCAGCCATGGAAAAATTA 592
Query 493 TTCAACAGAGTGGGACCTAATGGTGAG----------------------------------------------- 519
.||||||||||||||||||||||||||
Sbjct 593 ATCAACAGAGTGGGACCTAATGGTGAGAGTACCCAGACAGACCATAGTGATGTTTACGTCCATTGCCTAGGAGT 666
Query 520 ----------------------------------------AGAGCACAGACTGTGACTTCTGACCAAGAGAAAC 553
||||||||||||||||||||||||||||||||||
Sbjct 667 ATTTACCACTAAATGGTTGGATTGTCTGATATTTCTAAGCAGAGCACAGACTGTGACTTCTGACCAAGAGAAAC 740
Query 554 GGTTGCTACATCAGCTCCGAGAAATCACCAGGGTCATGAAAGAAGGAAAATTCATTGACAGATTTTCTCCAGAG 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GGTTGCTACATCAGCTCCGAGAAATCACCAGGGTCATGAAAGAAGGAAAATTCATTGACAGATTTTCTCCAGAG 814
Query 628 AAAGAAGCTGAGGAGGCCCCTTACATGGAGGACTGGGAAGGTTACCCTGAAGAGACTTACCCAATTTATGACCT 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAAGAAGCTGAGGAGGCCCCTTACATGGAGGACTGGGAAGGTTACCCTGAAGAGACTTACCCAATTTATGACCT 888
Query 702 TTCAGACTGTATCAAGCGTAGGCAAGAAACAATCTTGGTGGATTACCCTGACCCAAAAGAACTTTCTGCTGAAG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTCAGACTGTATCAAGCGTAGGCAAGAAACAATCTTGGTGGATTACCCTGACCCAAAAGAACTTTCTGCTGAAG 962
Query 776 AAATAGCTGAAAGAATGGGAATGATAGAAGAGGAAGAATCAGATCATTTGGGTTGGGAAAGTCTGCCCACTGAC 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAATAGCTGAAAGAATGGGAATGATAGAAGAGGAAGAATCAGATCATTTGGGTTGGGAAAGTCTGCCCACTGAC 1036
Query 850 CCCAGAGCCCAGGAAGATAATTCTGTTACCTCGTGTGATCCAAAGCCAGAAACATGTTCCTGCTGTTTTCATGA 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCCAGAGCCCAGGAAGATAATTCTGTTACCTCGTGTGATCCAAAGCCAGAAACATGTTCCTGCTGTTTTCATGA 1110
Query 924 AGACGAGGATCCTGCTGTCTTGGCAGAGAATGCTGGATTCAGTGCAGATAGCTACCCTGAGCAAGAGGAAACCA 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AGACGAGGATCCTGCTGTCTTGGCAGAGAATGCTGGATTCAGTGCAGATAGCTACCCTGAGCAAGAGGAAACCA 1184
Query 998 CCAAAGAAGAGTGGTCCCAAGACTTTAAAGATGAAGGGTTGGGCATCAGCACAGATAAAGCATATACAGGCAGC 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 1185 CCAAAGAAGAGTGGTCCCAAGACTTTAAAGATGAAGGGTTGGGCATCAGCACCGATAAAGCATATACAGGCAGC 1258
Query 1072 ATGCTGAGGAAGCGTAACCCCCAGGGTTTAGAG----------------------------------------- 1104
|||||||||||||||||||||||||||||||||
Sbjct 1259 ATGCTGAGGAAGCGTAACCCCCAGGGTTTAGAGTGAAAACAGCCAGTCTGAAGTATCCATTACTCAAGTCCCAA 1332
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1333 GATGGGACCACTCAGGGGCAAAGGTCTGACTCTTCCTGGTAGGTGTAACAGATAGTTCACCTGTGAACGAACAT 1406
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1407 CAGCTTACAGATGATGAGGACTTAAGGTTGCAAGAATGAAGATTTCAGACTCCAAGATCCCTTATTCTTTGGGC 1480
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1481 CTTGAGCAGAATATCCTGTATGCGCTATTTCCCACCAGAGGCAGAGGCCACAGGAGATAGGCCATGGTTCAGGT 1554
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1555 AGGAAATGCTCTTGGTCACATCAGAACTCTAGATCTGGGGGAATAAACAAACCCGAATTATTACCACACTCTCA 1628
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1629 AAGTTCTCTTCAATCTGGACTATTTGTATTCCAAAGAAAAATTTAGTGCTTTAGCTATTCAGCAATATTGAGAA 1702
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1703 AAAACATGAACACATTTATGACTTTGCCTTGACCATTGACTTTTCTAAAATGTGCTTCCTTTTCCTTTATTTCC 1776
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1777 CTTTTTTTATACAAAGAAAATAGCCCAAATTTCTCCTCTTAGGTCATTCCTTAACCTCTCAGAGAACCAGTTTC 1850
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1851 CCCATGAATTGGGAATAATGCTCTATTTACAGGGCTGTTTGGATTAAATAAGATGCTGTTTATAAAGTGTCTGT 1924
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1925 GCCAGGGCAAAGCATGTGGTAGGTGCTTGGTGACAGCATGATCCCTGTCACCACTCTGTCAAGTCCAGTGTTGC 1998
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1999 TGAGATGTCACACCTGACACCCTCTAAGGCTACCCTGATTGCCAGGAGTGGCCCAGGGCCCTTCTGCAGTCTCC 2072
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2073 GGGTGCCTTTAGTTATAACCTCTTGTCTGGGTCAGACCATTAGCTTTCATGTCTGCTTCTAGCTACAACTGTAG 2146
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2147 CCTCCCTTCCTTTTGCCTTCAAATCTGCCACAGCTGCCCGGCAACAAAAAAAGATTCCTAAGCATCTCGAGGTC 2220
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2221 CTGTTTAAATGGGTTAGGGTCCAAGCAAGCCCTGAGACATCAAGTGGTTGGGTCTTTTATACCTTTTTCATCTC 2294
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2295 TACAGCCCTGTTCTCTTCCTAAGGCCAGGCCCACAGGGGATACTGAGGAACCACCAGCCCCTTCAGGCGGCACA 2368
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2369 GCAGACCCTGAAGAGAACTGCTCTAACTTAAGTACCTTCTGACTTCACCATTTTTCCAGCCTCTGGGTGTGGTT 2442
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2443 CTGATGAACCTTAAACTTGAAAGGCACAGGCCAGAGGAAGGACAGTGTTGACCCACATGTCATTGGTGAGGTTA 2516
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2517 TGATCTCTTTGCTATTATCACCTACTTACCCACCTGAGGCTCCTAGGAAACAATGAATGAAAGGTATAGAAAAA 2590
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2591 AATTAGGAAGTAAACAGGGCTTTTTTCCCCTTTATGAAAAAAGTACACAGAAGTGTTGAAACGATTCAAGTTTA 2664
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2665 ATTTGTTGATATATGTGTGTACTTAGACAAACACTAAATTCTACAACATACATAATGTCAACATGGGAAAATAC 2738
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2739 CAAGTTTGTCATTGCACATACCAATAAATAAATACATTTGCTCCAGAATACCAAAGTTTATTCAAAAAGTCAAT 2812
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2813 AAAAGCACAGTTTTGCAAATTTGTCTAAAACGCCAGATAATCTTGAACAAAAATAAAATGTCTGACCACTCCAA 2886
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2887 AATAGGAAAAGACAATCTTGTGCAAATAGACATACACAGTCTAGGCATTGTGAAAACTGGCTGTGTTCCCAGCA 2960
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2961 AGAGATACTGCACCCTCCTGACCGAGCAGTCAGGCTTCCCTTTCCTAGCCATCCTAAGTTGCGTTCTAGGAAAC 3034
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3035 TCTGGATCTCAGCCTCATCTCCAGCTTTGCCTGGACCTTGCTAGGGGGAGGGAGGGACAGGAGCACAGAGGAGG 3108
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3109 AGAGGAGAGGGATGTGATGTCTTTCTTAGGAAAGAAAAAAAGGCACAGTGATGAGCTATAAAGGTAGTGATGAG 3182
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3183 AGCTATAAAGGTAGTGATGAAAGCAAGGAATAATTTTCATTCACCCCAAATCCTACGGCAAGCTTTGACAATGT 3256
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3257 AACATCTTTATCTTGTGGTTAGGAAAATGGACCTAGAGAGATTATGTGGTTTGCTCAAAATCACATAGCTACTA 3330
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3331 AGTGCAGTAGTGCTTTCTATAAGACCAACTTGCCTTTCCACTTGGTTGGAAAATTTAAAAACCAAACCTGTCGT 3404
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3405 AATCTATCTGTTCTGCCCCTCCCGCCTGTATCATGAGATGACTGAAAATTCCAGGTGGCCATAAACTCAAACAA 3478
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3479 GAGCCTAGCCCTTGGCTTATTACCGGTGGCTACTACAAACCTACAGACCAGAGCCCAGGGTAGTATAGAGTCCC 3552
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3553 AACTCTGGGCCCTGACTGCAGGTCATTCAGGTCCCAGTCACAGTGAAAGCAGACTCATTCAGCTATCTGGAGAA 3626
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3627 GTGTAATCTGAGGGCCACTTGGCATCCTGAGTTAACACAGGGATGCCGCAGCTGGGGTAAGGAATTAGAGAAGG 3700
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3701 GAAGGCCAGTGTTACTGCAGTAAGAGAAAACCAGGAAGTCCATCTAGGAGATGAAATTTGTGCTTGCATAACAG 3774
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3775 AGCCATGGAAATGGCTATCCCAGCATCTCCCCTCACTGCAGACTCCATTGTAAGCAAAGCATGGACCTTTTTCT 3848
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3849 TTGAAACCAACCCTGTCACTTGTTAAATTTAGAATTACCTCTAAATGCTAAGTTTATTTAAGAGGTAAATGTCC 3922
Query 1105 ---------------------------------- 1104
Sbjct 3923 TGCTATTTTCAGAATGGAGAAAAAAAAAAAAAAA 3956
