Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08936
- Subject:
- XR_930903.3
- Aligned Length:
- 3872
- Identities:
- 1100
- Gaps:
- 2768
Alignment
Query 1 ---------------------------------------------------ATGGCGTACTCCACAGTGCAGAG 23
|||||||||||||||||||||||
Sbjct 1 TCCGGTTCCGGTTCCGGCTGGCGTCTGCACCTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAG 74
Query 24 AGTCGCTCTGGCTTCTGGGCTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGC 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AGTCGCTCTGGCTTCTGGGCTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGC 148
Query 98 GGCAGGAGCCGCCGCCGACACCTG-------------------------------------------------A 122
|||||||||||||||||||||||| |
Sbjct 149 GGCAGGAGCCGCCGCCGACACCTGAAGAAAACTAAGAGTGAGAACTGACAAAAAGCCATTGGATTTGACGGTTA 222
Query 123 AGGAAAATTGGGCCGATTTCCACCTATGATGCATCATCACCAGGCACACTCAGATGGCCAGACTCCTGGGGCTC 196
|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 223 AGGAAAATTGGGCCGATTTCCACCTATGATGCATCATCACCAGGCACCCTCAGATGGCCAGACTCCTGGGGCTC 296
Query 197 GTTTCCAGAGGTCTCACCTTGCCGAGGCATTTGCAAAGGCCAAAGGATCAGGTGGAGGTGCTGGAGGAGGAGGT 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTTTCCAGAGGTCTCACCTTGCCGAGGCATTTGCAAAGGCCAAAGGATCAGGTGGAGGTGCTGGAGGAGGAGGT 370
Query 271 AGTGGAAGAGGTCTGATGGGGCAGATTATTCCGATCTACGGTTTTGGGATTTTTTTATATATACTGTACATTCT 344
||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGTGGAAGAGGTCTGATGGGGCAGATTATTCCAATCTACGGTTTTGGGATTTTTTTATATATACTGTACATTCT 444
Query 345 ATTTAAGCTCTCAAAGGGGAAAACAACTGCAGAGGATGGGAAATGCTATACTGCCATGCCTGGAAACACCCACA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ATTTAAGCTCTCAAAGGGGAAAACAACTGCAGAGGATGGGAAATGCTATACTGCCATGCCTGGAAACACCCACA 518
Query 419 GGAAAATTACCAGTTTTGAGCTTGCTCAACTGCAAGAAAAACTGAAGGAGACAGAAGCAGCCATGGAAAAATTA 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGAAAATTACCAGTTTTGAGCTTGCTCAACTGCAAGAAAAACTGAAGGAGACAGAAGCAGCCATGGAAAAATTA 592
Query 493 TTCAACAGAGTGGGACCTAATGGTGAG---AGAGCACAGACTGTGACTTCTGACCAAGAGAAACGGTTGCTACA 563
.|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATCAACAGAGTGGGACCTAATGGTGAGAGCAGAGCACAGACTGTGACTTCTGACCAAGAGAAACGGTTGCTACA 666
Query 564 TCAGCTCCGAGAAATCACCAGGGTCATGAAAGAAGGAAAATTCATTGACAGATTTTCTCCAGAGAAAGAAGCTG 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCAGCTCCGAGAAATCACCAGGGTCATGAAAGAAGGAAAATTCATTGACAGATTTTCTCCAGAGAAAGAAGCTG 740
Query 638 AGGAGGCCCCTTACATGGAGGACTGGGAAGGTTACCCTGAAGAGACTTACCCAATTTATGACCTTTCAGACTGT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGGAGGCCCCTTACATGGAGGACTGGGAAGGTTACCCTGAAGAGACTTACCCAATTTATGACCTTTCAGACTGT 814
Query 712 ATCAAGCGTAGGCAAGAAACAATCTTGGTGGATTACCCTGACCCAAAAGAACTTTCTGCTGAAGAAATAGCTGA 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 ATCAAGCGTAGGCAAGAAACAATCTTGGTGGATTACCCTGACCCAAAAGAACTTTCTGCTGAAGAAATAGCTGA 888
Query 786 AAGAATGGGAATGATAGAAGAGGAAGAATCAGATCATTTGGGTTGGGAAAGTCTGCCCACTGACCCCAGAGCCC 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAGAATGGGAATGATAGAAGAGGAAGAATCAGATCATTTGGGTTGGGAAAGTCTGCCCACTGACCCCAGAGCCC 962
Query 860 AGGAAGATAATTCTGTTACCTCGTGTGATCCAAAGCCAGAAACATGTTCCTGCTGTTTTCATGAAGACGAGGAT 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGGAAGATAATTCTGTTACCTCGTGTGATCCAAAGCCAGAAACATGTTCCTGCTGTTTTCATGAAGACGAGGAT 1036
Query 934 CCTGCTGTCTTGGCAGAGAATGCTGGATTCAGTGCAGATAGCTACCCTGAGCAAGAGGAAACCACCAAAGAAGA 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCTGCTGTCTTGGCAGAGAATGCTGGATTCAGTGCAGATAGCTACCCTGAGCAAGAGGAAACCACCAAAGAAGA 1110
Query 1008 GTGGTCCCAAGACTTTAAAGATGAAGGGTTGGGCATCAGCACAGATAAAGCATATACAGGCAGCATGCTGAGGA 1081
||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 1111 GTGGTCCCAAGACTTTAAAGATGAAGGGTTGGGCATCAGCACCGATAAAGCATATACAGGCAGCATGCTGAGGA 1184
Query 1082 AGCGTAACCCCCAGGGTTTAGAG--------------------------------------------------- 1104
|||||||||||||||||||||||
Sbjct 1185 AGCGTAACCCCCAGGGTTTAGAGTGAAAACAGCCAGTCTGAAGTATCCATTACTCAAGTCCCAAGATGGGACCA 1258
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1259 CTCAGGGGCAAAGGTCTGACTCTTCCTGGTAGGTGTAACAGATAGTTCACCTGTGAACGAACATCAGCTTACAG 1332
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1333 ATGATGAGGACTTAAGGTTGCAAGAATGAAGATTTCAGACTCCAAGATCCCTTATTCTTTGGGCCTTGAGCAGA 1406
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1407 ATATCCTGTATGCGCTATTTCCCACCAGAGGCAGAGGCCACAGGAGATAGGCCATGGTTCAGGTAGGAAATGCT 1480
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1481 CTTGGTCACATCAGAACTCTAGATCTGGGGGAATAAACAAACCCGAATTATTACCACACTCTCAAAGTTCTCTT 1554
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1555 CAATCTGGACTATTTGTATTCCAAAGAAAAATTTAGTGCTTTAGCTATTCAGCAATATTGAGAAAAAACATGAA 1628
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1629 CACATTTATGACTTTGCCTTGACCATTGACTTTTCTAAAATGTGCTTCCTTTTCCTTTATTTCCCTTTTTTTAT 1702
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1703 ACAAAGAAAATAGCCCAAATTTCTCCTCTTAGGTCATTCCTTAACCTCTCAGAGAACCAGTTTCCCCATGAATT 1776
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1777 GGGAATAATGCTCTATTTACAGGGCTGTTTGGATTAAATAAGATGCTGTTTATAAAGTGTCTGTGCCAGGGCAA 1850
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1851 AGCATGTGGTAGGTGCTTGGTGACAGCATGATCCCTGTCACCACTCTGTCAAGTCCAGTGTTGCTGAGATGTCA 1924
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1925 CACCTGACACCCTCTAAGGCTACCCTGATTGCCAGGAGTGGCCCAGGGCCCTTCTGCAGTCTCCGGGTGCCTTT 1998
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1999 AGTTATAACCTCTTGTCTGGGTCAGACCATTAGCTTTCATGTCTGCTTCTAGCTACAACTGTAGCCTCCCTTCC 2072
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2073 TTTTGCCTTCAAATCTGCCACAGCTGCCCGGCAACAAAAAAAGATTCCTAAGCATCTCGAGGTCCTGTTTAAAT 2146
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2147 GGGTTAGGGTCCAAGCAAGCCCTGAGACATCAAGTGGTTGGGTCTTTTATACCTTTTTCATCTCTACAGCCCTG 2220
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2221 TTCTCTTCCTAAGGCCAGGCCCACAGGGGATACTGAGGAACCACCAGCCCCTTCAGGCGGCACAGCAGACCCTG 2294
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2295 AAGAGAACTGCTCTAACTTAAGTACCTTCTGACTTCACCATTTTTCCAGCCTCTGGGTGTGGTTCTGATGAACC 2368
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2369 TTAAACTTGAAAGGCACAGGCCAGAGGAAGGACAGTGTTGACCCACATGTCATTGGTGAGGTTATGATCTCTTT 2442
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2443 GCTATTATCACCTACTTACCCACCTGAGGCTCCTAGGAAACAATGAATGAAAGGTATAGAAAAAAATTAGGAAG 2516
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2517 TAAACAGGGCTTTTTTCCCCTTTATGAAAAAAGTACACAGAAGTGTTGAAACGATTCAAGTTTAATTTGTTGAT 2590
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2591 ATATGTGTGTACTTAGACAAACACTAAATTCTACAACATACATAATGTCAACATGGGAAAATACCAAGTTTGTC 2664
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2665 ATTGCACATACCAATAAATAAATACATTTGCTCCAGAATACCAAAGTTTATTCAAAAAGTCAATAAAAGCACAG 2738
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2739 TTTTGCAAATTTGTCTAAAACGCCAGATAATCTTGAACAAAAATAAAATGTCTGACCACTCCAAAATAGGAAAA 2812
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2813 GACAATCTTGTGCAAATAGACATACACAGTCTAGGCATTGTGAAAACTGGCTGTGTTCCCAGCAAGAGATACTG 2886
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2887 CACCCTCCTGACCGAGCAGTCAGGCTTCCCTTTCCTAGCCATCCTAAGTTGCGTTCTAGGAAACTCTGGATCTC 2960
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2961 AGCCTCATCTCCAGCTTTGCCTGGACCTTGCTAGGGGGAGGGAGGGACAGGAGCACAGAGGAGGAGAGGAGAGG 3034
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3035 GATGTGATGTCTTTCTTAGGAAAGAAAAAAAGGCACAGTGATGAGCTATAAAGGTAGTGATGAGAGCTATAAAG 3108
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3109 GTAGTGATGAAAGCAAGGAATAATTTTCATTCACCCCAAATCCTACGGCAAGCTTTGACAATGTAACATCTTTA 3182
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3183 TCTTGTGGTTAGGAAAATGGACCTAGAGAGATTATGTGGTTTGCTCAAAATCACATAGCTACTAAGTGCAGTAG 3256
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3257 TGCTTTCTATAAGACCAACTTGCCTTTCCACTTGGTTGGAAAATTTAAAAACCAAACCTGTCGTAATCTATCTG 3330
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3331 TTCTGCCCCTCCCGCCTGTATCATGAGATGACTGAAAATTCCAGGTGGCCATAAACTCAAACAAGAGCCTAGCC 3404
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3405 CTTGGCTTATTACCGGTGGCTACTACAAACCTACAGACCAGAGCCCAGGGTAGTATAGAGTCCCAACTCTGGGC 3478
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3479 CCTGACTGCAGGTCATTCAGGTCCCAGTCACAGTGAAAGCAGACTCATTCAGCTATCTGGAGAAGTGTAATCTG 3552
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3553 AGGGCCACTTGGCATCCTGAGTTAACACAGGGATGCCGCAGCTGGGGTAAGGAATTAGAGAAGGGAAGGCCAGT 3626
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3627 GTTACTGCAGTAAGAGAAAACCAGGAAGTCCATCTAGGAGATGAAATTTGTGCTTGCATAACAGAGCCATGGAA 3700
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3701 ATGGCTATCCCAGCATCTCCCCTCACTGCAGACTCCATTGTAAGCAAAGCATGGACCTTTTTCTTTGAAACCAA 3774
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3775 CCCTGTCACTTGTTAAATTTAGAATTACCTCTAAATGCTAAGTTTATTTAAGAGGTAAATGTCCTGCTATTTTC 3848
Query 1105 ------------------------ 1104
Sbjct 3849 AGAATGGAGAAAAAAAAAAAAAAA 3872
