Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08959
- Subject:
- XR_001778433.1
- Aligned Length:
- 2079
- Identities:
- 1180
- Gaps:
- 711
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGCCCGCCTGCCGGCCCCGCCCCCCAGCCGCCATTGACAGTGTAGGCTCGCACTTCCTTGCAGAGGGATGGCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCTTCGGGCGGGCCCGGTAGCCCCGCAGTGTGCGCTGCTCTGGTAGCGGCTCGCAAGCGGGCGCGATCCGGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCGCGGGTGCACAGGTGCGGCCCACGCCTCCCTCGGCGCCTCAGCACCTTCGGGGCGGGACGCGGGACGGTCTG 222
Query 1 ---------ATGATGGAGGGAAGCAGGCAGACGCGAGTGTCTCGGCCATACAAGATCAGCGAATCATCAAAGGT 65
|..|||||||.|||||.|||||.|||.||.||.|||||||||||.|||||.||.||.||||||||
Sbjct 223 AGATTGGTCACAATGGAGGCAAGCAAGCAGATGCGGGTATCCCGGCCATACAAAATCAGTGAGTCTTCAAAGGT 296
Query 66 ATACCGCTGGGCCGACCACTCAAGCACGGTGCTGCAGCGGCTGAACGAGCAGCGTCTCCGCGGGCTCTTCTGCG 139
.||||.||||.|.||||||||.|...||||||||||||||||||||||||||||.||.|.|||.||||||||||
Sbjct 297 GTACCACTGGCCTGACCACTCTACTGCGGTGCTGCAGCGGCTGAACGAGCAGCGGCTGCACGGCCTCTTCTGCG 370
Query 140 ACGTCGTCCTGGTGGCCGATGAGCAGCGTGTGCCAGCCCATCGCAACCTGCTGGCCGTGTGCAGCGACTACTTC 213
||||.||.|||||||.|||.|||||||..|||||||||||.||||||||.|||||.||||||||||||||||||
Sbjct 371 ACGTGGTGCTGGTGGTCGAAGAGCAGCAAGTGCCAGCCCACCGCAACCTTCTGGCTGTGTGCAGCGACTACTTC 444
Query 214 AACTCCATGTTCACCATCGGCATGCGGGAAGCTTTCCAGAAGGAGGTGGAGCTGATCGGCGCCTCCTACATTGG 287
||||||||||||||..|.||||||||.|||||||||||||||||||||||||||.|.|||.||||||||.|.||
Sbjct 445 AACTCCATGTTCACACTGGGCATGCGCGAAGCTTTCCAGAAGGAGGTGGAGCTGGTGGGCACCTCCTACGTGGG 518
Query 288 GCTCAAGGCCGTGGTGGACTTCCTGTACGGCGGGGAGCTGGTGCTGGATGGCGGCAACATTGACTACGTCCTGG 361
|||||||||||||||.||.|||||.|||.||.|.|||||||.||||||.|||.||||||||||||||.||||||
Sbjct 519 GCTCAAGGCCGTGGTAGATTTCCTCTACAGCAGCGAGCTGGAGCTGGACGGCAGCAACATTGACTACATCCTGG 592
Query 362 AGACGGCTCACCTGCTGCAGATCTGGACGGTGGTAGACTTCTGCTGTGAGTACCTGGAGCAGGAGGTGAGCGAG 435
|||||||.||.|||||||||||||||||.|||||.||.||||||||||||||||||||||||||||||||||||
Sbjct 593 AGACGGCGCATCTGCTGCAGATCTGGACCGTGGTGGATTTCTGCTGTGAGTACCTGGAGCAGGAGGTGAGCGAG 666
Query 436 GACAACTACCTGTACCTGCAGGAGCTGGCCTCCATCTACAGCCTCAAGCGGCTTGATGCCTTCATCGATGGCTT 509
||||||||.||.|||||.|||||||||||||||||||||||.||||||.||||.|||||||||||||||.||||
Sbjct 667 GACAACTATCTCTACCTACAGGAGCTGGCCTCCATCTACAGTCTCAAGAGGCTCGATGCCTTCATCGATAGCTT 740
Query 510 CATCCTGAACCACTTCGGCACGCTGTCCTTTACGCCCGACTTCCTGCAGAACGTCTCCATGCAGAAGCTGTGTG 583
|.|.||||.|||||||.|||||||||||||.|||||.||||||||||||..|.|||||.|||||||||||||||
Sbjct 741 CGTACTGAGCCACTTCAGCACGCTGTCCTTCACGCCTGACTTCCTGCAGTCCATCTCCGTGCAGAAGCTGTGTG 814
Query 584 TCTACCTGAGCAGCAGCGAGGTGCAGCGGGAGTGTGAGCACGACCTCTTGCAGGCCGCCCTGCAGTGGCTGACG 657
|||||||||||||..||.||||.||||...|.||.||..|||||||..||||||..||.|||||||||||.|||
Sbjct 815 TCTACCTGAGCAGTGGCCAGGTACAGCACAAATGGGAATACGACCTGCTGCAGGTGGCTCTGCAGTGGCTCACG 888
Query 658 CAGCAGCCCGAGCGCGAGGCCCACGCCCGCCAGGTGCTGGAGAACATCCACTTCCCGCTCATCCCCAAGAACGA 731
||||||||.||||||||||..|||.||||||..||.|||||||||||||.||||||.|||.|||||.||.||..
Sbjct 889 CAGCAGCCGGAGCGCGAGGTGCACACCCGCCGCGTTCTGGAGAACATCCGCTTCCCCCTCTTCCCCGAGGACAT 962
Query 732 CCTGCTGCACCGCGTCAAGCCGGCCGTGTGCTCGCTGCTGCCCAAGGAGGCCAACTGCGAGGGCTTCATCGAGG 805
||||||.||.||.||.||||.||||.|||||||.||||||||||..|||||||||.||||||||||..|.||||
Sbjct 963 CCTGCTACAGCGGGTGAAGCTGGCCATGTGCTCTCTGCTGCCCAGCGAGGCCAACGGCGAGGGCTTTGTGGAGG 1036
Query 806 AGGCCGTGCGCTACCACAACAACCTGGCGGCCCAGCCCGTCATGCAGACCAAGCGCACGGCGCTGCGCACCAAC 879
|||||.|||.|||||||||||.|||||.|||||||||.|||.|||||||.|||||.|||..|||||||.| |
Sbjct 1037 AGGCCATGCACTACCACAACAGCCTGGTGGCCCAGCCTGTCCTGCAGACGAAGCGAACGCTGCTGCGCTC---C 1107
Query 880 CAGGAGCGCCTGCTGTTTGTGGGCGGCGAGGTCTCCGAGCGGTGTCTGGAGCTCAGTGACGACACCTGCTACCT 953
.|||||.||.||||.||.|||||.|||||||||||.|||||||||||||||||.||.||.||||||||||||||
Sbjct 1108 GAGGAGTGCTTGCTCTTCGTGGGGGGCGAGGTCTCTGAGCGGTGTCTGGAGCTGAGCGATGACACCTGCTACCT 1181
Query 954 GGACGCCAAGAGCGAGCAGTGGGTCAAAGAGACGCCGCTGCCCGCCCGGCGGAGCCACCACTGTGTCGCGGTGC 1027
.|||.||||||..|||||||||||.||.|||||..|.|||||.|||||.||||||||||||||.|||||.||||
Sbjct 1182 AGACACCAAGAATGAGCAGTGGGTGAAGGAGACATCCCTGCCGGCCCGCCGGAGCCACCACTGCGTCGCTGTGC 1255
Query 1028 TGGGGGGCTTCATCTTCATCGCCGGCGGCAGCTTCTCACGGGACAACGGAGGGGATGCGGCCTCCAATCTTCTT 1101
|||||||||||||||||||.|||||.|||||||||||..|.||||||||||||.||||.||||||||.||||||
Sbjct 1256 TGGGGGGCTTCATCTTCATTGCCGGGGGCAGCTTCTCGAGAGACAACGGAGGGAATGCCGCCTCCAACCTTCTT 1329
Query 1102 TATAGGTATGACCCCCGCTGTAAACAGTGGATCAAGGTGGCCTCCATGAACCAGCGCCGTGTGGATTTCTACCT 1175
||| |||||||.||||||||||||||||||||||||||||||||
Sbjct 1330 TAT-------------------------------AGGTGGCGTCCATGAACCAGCGCCGTGTGGATTTCTACCT 1372
Query 1176 TGCCTCCATCGAAGACATGCTGGTGGCCATCGGCGGCCGGAATGAGAACGGAGCGCTCTCTTCAGTAGAGACGT 1249
.||.|||||.|||||||||||||||||..||||.||||||||.|||||.||||||||.|||||.||||||||.|
Sbjct 1373 AGCTTCCATTGAAGACATGCTGGTGGCTGTCGGTGGCCGGAACGAGAATGGAGCGCTGTCTTCTGTAGAGACCT 1446
Query 1250 ACAGTCCCAAGACTGACTCCCGGTCCTATGTGGCCGGCTTGCCAAGGTTCACGTACGGCCACGCGGGCACCATC 1323
||||.||||||||..|||||.||.||||.|||||||||||||||||||||||.||.||||||||||||||||||
Sbjct 1447 ACAGCCCCAAGACCAACTCCTGGACCTACGTGGCCGGCTTGCCAAGGTTCACCTATGGCCACGCGGGCACCATC 1520
Query 1324 TACAAAGACTTCGTGTACATCTCGGGGGGCCACGACTACCAAATTGGCCCCTACCGCAAGAACCTGCTATGCTA 1397
|||||||||||.||.||||||||.|||||||||||||||||.||||||||.|||||||||||||||||.||.||
Sbjct 1521 TACAAAGACTTTGTCTACATCTCAGGGGGCCACGACTACCAGATTGGCCCGTACCGCAAGAACCTGCTGTGTTA 1594
Query 1398 CGACCACCGGACAGACGTGTGGGAGGAGCGGCGGCCCATGACCACGGCGCGCGGCTGGCACAGCATGTGCAGCC 1471
.||||
Sbjct 1595 TGACC--------------------------------------------------------------------- 1599
Query 1472 TGGGTGACAGCATCTACTCCATCGGGGGCAGCGATGACAACATCGAGTCCATGGAGCGCTTCGACGTGCTGGGC 1545
Sbjct 1600 -------------------------------------------------------------------------- 1599
Query 1546 GTGGAGGCCTACAGCCCGCAGTGCAACCAGTGGACCCGCGTGGCGCCGCTGCTGCACGCCAACAGCGAGTCGGG 1619
Sbjct 1600 -------------------------------------------------------------------------- 1599
Query 1620 CGTGGCAGTGTGGGAGGGCCGCATCTACATCCTGGGCGGCTACAGCTGGGAGAACACTGCCTTCTCCAAGACCG 1693
Sbjct 1600 -------------------------------------------------------------------------- 1599
Query 1694 TGCAGGTGTACGACCGCGAGGCCGACAAGTGGAGCAGGGGCGTCGACCTGCCCAAGGCCATCGCTGGCGGGTCC 1767
Sbjct 1600 -------------------------------------------------------------------------- 1599
Query 1768 GCCTGTGTCTGCGCCCTGGAGCCACGGCCAGAGGACAAGAAGAAGAAAGGCAAAGGCAAGAGGCACCAGGACCG 1841
Sbjct 1600 -------------------------------------------------------------------------- 1599
Query 1842 GGGCCAG 1848
Sbjct 1600 ------- 1599
