Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09043
Subject:
XR_001740291.1
Aligned Length:
2301
Identities:
1316
Gaps:
984

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAGAAAGGTAAGGGCCCTGGGCGAGGAAAGCGCGGCCCTTTCCGAGTTTGGTGTTTTGCAGCGAAAGGAAATCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGCTCTTCCGAAAGTCCTCCAGGGCGAGAGAGGAAAGGGCCTAGGTACTGTGCTGGGGTCGCACAGCCGGCCGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GACAGTGCCGGGACGGGGAGCCAGGCTTCCGAGTGCGCCCGGTCACTGACTCCTCCGCGCTTTCCTCGTGCGCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGCAGCCCTTGGTTCTTGGAAACGCCGGCGCCTTGTTCAGGGCTGGTGGGGCTGGGGCGCAAGGTGCAGCTGAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AATGCCCGAGAGGAGCCGCAGCCTCTGGTGGAGTTCGGTCGGGTGTGGGGGTAGTCAAGGAAAGAAGCAAAGGG  370

Query    1  -----------------ATGGCAGAAGCTGTTTTCCATGCCCCAAAGAGGAAAAGAAGAGTGTATGAGACTTAC  57
                             |||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AATACCTCCTCTGAAAAATGGCAGAAGCAGTTTTCCATGCCCCAAAGAGGAAAAGAAGAGTGTATGAGACTTAC  444

Query   58  GAGTCTCCATTGCCAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTCAAGATATTCCGTGCTGAAAT  131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GAGTCTCCATTGCCAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTCAAGATATTCCGTGCTGAAAT  518

Query  132  GATTAACAACAATGTGATTGTGAGGAATGCGGAGGACATTGAGCAGCTCTATGGGAAAGGTTATTTTGGAAAAG  205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GATTAACAACAATGTGATTGTGAGGAATGCGGAGGACATTGAGCAGCTCTATGGGAAAGGTTATTTTGGAAAAG  592

Query  206  GTATTCTTTCAAGAAGCCGTCCAAGCTTCACAATTTCAGATCCTAAACTGGTTGCTAAATGGAAAGATATGAAG  279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GTATTCTTTCAAGAAGCCGTCCAAGCTTCACAATTTCAGATCCTAAACTGGTTGCTAAATGGAAAGATATGAAG  666

Query  280  ACAAACATGCCTATCATCACATCAAAGAGGTATCAGCATAGTGTTGAGTGGGCAGCAGAGCTGATGCGTAGACA  353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ACAAACATGCCTATCATCACATCAAAGAGGTATCAGCATAGTGTTGAGTGGGCAGCAGAGCTGATGCGTAGACA  740

Query  354  GGGGCAGGATGAGAGTACAGTGCGCAGAATCCTCAAGGATTACACGAAACCGCTTGAGCATCCTCCTGTGAAAA  427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GGGGCAGGATGAGAGTACAGTGCGCAGAATCCTCAAGGATTACACGAAACCGCTTGAGCATCCTCCTGTGAAAA  814

Query  428  GGAATGAAGAGGCTCAAGTGCATGACAAGCTTAACTCTGGAATGGTTTCCAACATGGAAGGCACAGCAGGGGGA  501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GGAATGAAGAGGCTCAAGTGCATGACAAGCTTAACTCTGGAATGGTTTCCAACATGGAAGGCACAGCAGGGGGA  888

Query  502  GAGAGACCTTCTGTGGTAAACGGGGACTCTGGAAAGTCAGGTGGTGTGGGTGATCCCCGTGAGCCATTAGGCTG  575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GAGAGACCTTCTGTGGTAAACGGGGACTCTGGAAAGTCAGGTGGTGTGGGTGATCCCCGTGAGCCATTAGGCTG  962

Query  576  CCTGCAGGAGGGCTCTGGCTGCCACCCAACAACAGAGAGCTTTGAGAAAAGCGTGCGAGAGGATGCCTCACCTC  649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CCTGCAGGAGGGCTCTGGCTGCCACCCAACAACAGAGAGCTTTGAGAAAAGCGTGCGAGAGGATGCCTCACCTC  1036

Query  650  TGCCCCATGTCTGTTGCTGCAAACAAGATGCTCTCATCCTCCAGCGTGGCCTTCATCATGAAGACGGCAGCCAG  723
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGCCCCATGTCTGTTGCTGCAAACAAGATGCTCTCATCCTCCAGCGTGGCCTTCATCATGAAGACGGCAGCCAG  1110

Query  724  CACATCGGCCTCCTGCATCCTGGGGACAGAGGGCCTGACCATGAGTACGTGCTGGTCGAGGAAGCGGAGTGTGC  797
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CACATCGGCCTCCTGCATCCTGGGGACAGAGGGCCTGACCATGAGTACGTGCTGGTCGAGGAAGCGGAGTGTGC  1184

Query  798  CATGAGCGAGAGGGAGGCTGCCCCAAATGAGGAATTGGTGCAAAGAAACAGGTTAATATGCAGAAGAAATCCAT  871
            ||||||||||||||||||||||||||||||||||                                        
Sbjct 1185  CATGAGCGAGAGGGAGGCTGCCCCAAATGAGGAA----------------------------------------  1218

Query  872  ATAGGATCTTTGAGTATTTGCAACTCAGCCTAGAAGAGGCCTTTTTCTTGGTCTATGCTCTGGGATGTTTAAGT  945
                                                  ||||||||||||||||||||||||||||||||||||
Sbjct 1219  --------------------------------------GCCTTTTTCTTGGTCTATGCTCTGGGATGTTTAAGT  1254

Query  946  ATTTACTATGAGAAGGAGCCTTTAACGATAGTGAAGCTCTGGAAAGCTTTCACTGTAGTTCAGCCCACGTTCAG  1019
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255  ATTTACTATGAGAAGGAGCCTTTAACGATAGTGAAGCTCTGGAAAGCTTTCACTGTAGTTCAGCCCACGTTCAG  1328

Query 1020  AACCACCTACATGGCCTACCATTACTTTCGAAGCAAGGGCTGGGTGCCCAAAGTGGGACTCAAGTACGGGACAG  1093
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329  AACCACCTACATGGCCTACCATTACTTTCGAAGCAAGGGCTGGGTGCCCAAAGTGGGACTCAAGTACGGGACAG  1402

Query 1094  ATTTACTGCTATATCGGAAAGGCCCTCCATTTTACCATGCAAGTTATTCTGTCATTATCGAGCTAGTTGATGAC  1167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403  ATTTACTGCTATATCGGAAAGGCCCTCCATTTTACCATGCAAGTTATTCTGTCATTATCGAGCTAGTTGATGAC  1476

Query 1168  CATTTTGAAGGCTCTCTCCGCAGGCCTCTCAGTTGGAAGTCCCTGGCTGCCTTGAGCAGAGTTTCCGTTAATGT  1241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477  CATTTTGAAGGCTCTCTCCGCAGGCCTCTCAGTTGGAAGTCCCTGGCTGCCTTGAGCAGAGTTTCCGTTAATGT  1550

Query 1242  CTCTAAGGAACTTATGCTGTGCTATTTGATTAAACCCTCTACTATGACTGACAAGGAAATGGAGTCACCAGAAT  1315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551  CTCTAAGGAACTTATGCTGTGCTATTTGATTAAACCCTCTACTATGACTGACAAGGAAATGGAGTCACCAGAAT  1624

Query 1316  GTATGAAAAGGATTAAAGTTCAGGAGGTGATTCTGAGTCGATGGGTTTCTTCACGAGAGAGGAGTGACCAAGAC  1389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625  GTATGAAAAGGATTAAAGTTCAGGAGGTGATTCTGAGTCGATGGGTTTCTTCACGAGAGAGGAGTGACCAAGAC  1698

Query 1390  GATCTT--------------------------------------------------------------------  1395
            ||||||                                                                    
Sbjct 1699  GATCTTTAACAATTCAACCTCAAATTTCTAATTTCACCAACAACTATTTATTGAGGGCTAGTCTCGCTCTGTCG  1772

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1773  TCCAGGCTGGAGTCCAATGCTGCGATCTTGGATCACTGCAACCTCTGCCTGCTGGGTTTAAGCGATTCTCATGC  1846

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1847  CTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCACCACACACGGCTAATTTTTGTATTTTTAGTAGAGA  1920

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1921  CGGGGTTTCACTATGTTGGCCAGGCTGGTCTGGAACTCCTGACCTCAAGTGATCTGCCCGCCTTGGCCTCCCAA  1994

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1995  AGTGCTGAGAGTACAGGCGTGAGCCACTGCATCCAGCTCTTAGCATGTGCTTTTAAAGTAAAAACCACGAGGAG  2068

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2069  AAGGTACTCATTACTTCATAACTTGTGTCTCACCCACCTTGCTGTCTTCACATCCCCACTTTCTGTATGCACAT  2142

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2143  TGGAAGGTGAATTTGTTCAGCTCACATTAATTTATAGGAATAATTTTCATTGCTCTGTGAATAAAATGTGCTAC  2216

Query 1396  -------  1395
                   
Sbjct 2217  CACTTTA  2223

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