Construct: ORF ccsbBroadEn_09043

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009128.1_s300c1, BRDN0000389282
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TSEN2 (80746)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80746 TSEN2 tRNA splicing endonuclease ... NM_001145392.1 99.9% 100% 12A>T
2 human 80746 TSEN2 tRNA splicing endonuclease ... NM_001321277.1 99.9% 100% 12A>T
3 human 80746 TSEN2 tRNA splicing endonuclease ... NM_025265.4 99.9% 100% 12A>T
4 human 80746 TSEN2 tRNA splicing endonuclease ... XM_017007296.2 99.9% 100% 12A>T
5 human 80746 TSEN2 tRNA splicing endonuclease ... XM_017007292.1 96% 96% 12A>T;307_363del
6 human 80746 TSEN2 tRNA splicing endonuclease ... XM_017007293.1 96% 96% 12A>T;307_363del
7 human 80746 TSEN2 tRNA splicing endonuclease ... XM_017007294.1 96% 96% 12A>T;307_363del
8 human 80746 TSEN2 tRNA splicing endonuclease ... XM_017007295.2 96% 96% 12A>T;307_363del
9 human 80746 TSEN2 tRNA splicing endonuclease ... NM_001145393.2 94.3% 94.4% 12A>T;831_832ins78
10 human 80746 TSEN2 tRNA splicing endonuclease ... NM_001321279.1 94.3% 94.4% 12A>T;831_832ins78
11 human 80746 TSEN2 tRNA splicing endonuclease ... XM_024453785.1 94.3% 94.4% 12A>T;831_832ins78
12 human 80746 TSEN2 tRNA splicing endonuclease ... XM_017007297.1 90.6% 90.7% 12A>T;307_363del;888_889ins78
13 human 80746 TSEN2 tRNA splicing endonuclease ... NM_001145394.1 87.2% 87.3% 12A>T;515_516ins177
14 human 80746 TSEN2 tRNA splicing endonuclease ... NM_001321278.2 87.1% 86.7% (many diffs)
15 human 80746 TSEN2 tRNA splicing endonuclease ... XM_024453784.1 86.7% 86.3% (many diffs)
16 human 80746 TSEN2 tRNA splicing endonuclease ... XM_011534139.3 80.4% 80.4% 0_1ins273
17 human 80746 TSEN2 tRNA splicing endonuclease ... NR_135607.2 70.7% 1_55del;67A>T;1451_1969del
18 human 80746 TSEN2 tRNA splicing endonuclease ... XR_002959593.1 68% 1_135del;147A>T;1531_2047del
19 human 80746 TSEN2 tRNA splicing endonuclease ... XR_002959592.1 66.6% (many diffs)
20 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740290.2 66% (many diffs)
21 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740301.2 65.7% (many diffs)
22 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740294.2 65.3% (many diffs)
23 human 80746 TSEN2 tRNA splicing endonuclease ... XR_002959594.1 64.1% (many diffs)
24 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740288.2 63.3% (many diffs)
25 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740300.2 63.2% (many diffs)
26 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740303.2 61.6% (many diffs)
27 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740295.2 61.5% (many diffs)
28 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740302.2 61.5% (many diffs)
29 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740289.2 60.7% 1_387del;399A>T;1783_2295del
30 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740287.1 59.1% (many diffs)
31 human 80746 TSEN2 tRNA splicing endonuclease ... XR_427296.2 57.9% (many diffs)
32 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740293.1 57.5% (many diffs)
33 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740291.1 57.1% (many diffs)
34 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740292.1 55.5% (many diffs)
35 human 80746 TSEN2 tRNA splicing endonuclease ... XR_002959595.1 55.4% (many diffs)
36 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740297.1 54.2% (many diffs)
37 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740304.1 53.7% (many diffs)
38 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740298.2 51.1% (many diffs)
39 human 80746 TSEN2 tRNA splicing endonuclease ... XR_001740296.1 49.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1461
ORF length:
1395
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC AGAAGCTGTT TTCCATGCCC CAAAGAGGAA AAGAAGAGTG TATGAGACTT
121ACGAGTCTCC ATTGCCAATC CCTTTTGGTC AGGACCATGG TCCTCTGAAA GAATTCAAGA
181TATTCCGTGC TGAAATGATT AACAACAATG TGATTGTGAG GAATGCGGAG GACATTGAGC
241AGCTCTATGG GAAAGGTTAT TTTGGAAAAG GTATTCTTTC AAGAAGCCGT CCAAGCTTCA
301CAATTTCAGA TCCTAAACTG GTTGCTAAAT GGAAAGATAT GAAGACAAAC ATGCCTATCA
361TCACATCAAA GAGGTATCAG CATAGTGTTG AGTGGGCAGC AGAGCTGATG CGTAGACAGG
421GGCAGGATGA GAGTACAGTG CGCAGAATCC TCAAGGATTA CACGAAACCG CTTGAGCATC
481CTCCTGTGAA AAGGAATGAA GAGGCTCAAG TGCATGACAA GCTTAACTCT GGAATGGTTT
541CCAACATGGA AGGCACAGCA GGGGGAGAGA GACCTTCTGT GGTAAACGGG GACTCTGGAA
601AGTCAGGTGG TGTGGGTGAT CCCCGTGAGC CATTAGGCTG CCTGCAGGAG GGCTCTGGCT
661GCCACCCAAC AACAGAGAGC TTTGAGAAAA GCGTGCGAGA GGATGCCTCA CCTCTGCCCC
721ATGTCTGTTG CTGCAAACAA GATGCTCTCA TCCTCCAGCG TGGCCTTCAT CATGAAGACG
781GCAGCCAGCA CATCGGCCTC CTGCATCCTG GGGACAGAGG GCCTGACCAT GAGTACGTGC
841TGGTCGAGGA AGCGGAGTGT GCCATGAGCG AGAGGGAGGC TGCCCCAAAT GAGGAATTGG
901TGCAAAGAAA CAGGTTAATA TGCAGAAGAA ATCCATATAG GATCTTTGAG TATTTGCAAC
961TCAGCCTAGA AGAGGCCTTT TTCTTGGTCT ATGCTCTGGG ATGTTTAAGT ATTTACTATG
1021AGAAGGAGCC TTTAACGATA GTGAAGCTCT GGAAAGCTTT CACTGTAGTT CAGCCCACGT
1081TCAGAACCAC CTACATGGCC TACCATTACT TTCGAAGCAA GGGCTGGGTG CCCAAAGTGG
1141GACTCAAGTA CGGGACAGAT TTACTGCTAT ATCGGAAAGG CCCTCCATTT TACCATGCAA
1201GTTATTCTGT CATTATCGAG CTAGTTGATG ACCATTTTGA AGGCTCTCTC CGCAGGCCTC
1261TCAGTTGGAA GTCCCTGGCT GCCTTGAGCA GAGTTTCCGT TAATGTCTCT AAGGAACTTA
1321TGCTGTGCTA TTTGATTAAA CCCTCTACTA TGACTGACAA GGAAATGGAG TCACCAGAAT
1381GTATGAAAAG GATTAAAGTT CAGGAGGTGA TTCTGAGTCG ATGGGTTTCT TCACGAGAGA
1441GGAGTGACCA AGACGATCTT TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1501attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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