Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09043
Subject:
XR_001740298.2
Aligned Length:
2352
Identities:
1204
Gaps:
1147

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCGGTGTCCGCCCCACGGCCGGCGTTGCCGGGGTAACGGCGAGCGCGTGGGGCCAAGAAAGAATACCTCCTCT  74

Query    1  -----ATGGCAGAAGCTGTTTTCCATGCCCCAAAGAGGAAAAGAAGAGTGTATGAGACTTACGAGTCTCCATTG  69
                 |||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GAAAAATGGCAGAAGCAGTTTTCCATGCCCCAAAGAGGAAAAGAAGAGTGTATGAGACTTACGAGTCTCCATTG  148

Query   70  CCAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTCAAGATATTCCGTGCTGAAATGATTAACAACAA  143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CCAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTCAAGATATTCCGTGCTGAAATGATTAACAACAA  222

Query  144  TGTGATTGTGAGGAATGCGGAGGACATTGAGCAGCTCTATGGGAAAGGTTATTTTGGAAAAGGTATTCTTTCAA  217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TGTGATTGTGAGGAATGCGGAGGACATTGAGCAGCTCTATGGGAAAGGTTATTTTGGAAAAGGTATTCTTTCAA  296

Query  218  GAAGCCGTCCAAGCTTCACAATTTCAGATCCTAAACTGGTTGCTAAATGGAAAGATATGAAGACAAACATGCCT  291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GAAGCCGTCCAAGCTTCACAATTTCAGATCCTAAACTGGTTGCTAAATGGAAAGATATGAAGACAAACATGCCT  370

Query  292  ATCATCACATCAAAGAGGTATCAGCATAGTGTTGAGTGGGCAGCAGAGCTGATGCGTAGACAGGGGCAGGATGA  365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ATCATCACATCAAAGAGGTATCAGCATAGTGTTGAGTGGGCAGCAGAGCTGATGCGTAGACAGGGGCAGGATGA  444

Query  366  GAGTACAGTGCGCAGAATCCTCAAGGATTACACGAAACCGCTTGAGCATCCTCCTGTGAAAAGGAATGAAGAGG  439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GAGTACAGTGCGCAGAATCCTCAAGGATTACACGAAACCGCTTGAGCATCCTCCTGTGAAAAGGAATGAAGAGG  518

Query  440  CTCAAGTGCATGACAAGCTTAACTCTGGAATGGTTTCCAACATGGAAGGCACAGCAGGGGGAGAGAGACCTTCT  513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CTCAAGTGCATGACAAGCTTAACTCTGGAATGGTTTCCAACATGGAAGGCACAGCAGGGGGAGAGAGACCTTCT  592

Query  514  GTGGTAAACGGGGACTCTGGAAAGTCAGGTGGTGTGGGTGATCCCCGTGAGCCATTAGGCTGCCTGCAGGAGGG  587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GTGGTAAACGGGGACTCTGGAAAGTCAGGTGGTGTGGGTGATCCCCGTGAGCCATTAGGCTGCCTGCAGGAGGG  666

Query  588  CTCTGGCTGCCACCCAACAACAGAGAGCTTTGAGAAAAGCGTGCGAGAGGATGCCTCACCTCTGCCCCATGTCT  661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CTCTGGCTGCCACCCAACAACAGAGAGCTTTGAGAAAAGCGTGCGAGAGGATGCCTCACCTCTGCCCCATGTCT  740

Query  662  GTTGCTGCAAACAAGATGCTCTCATCCTCCAGCGTGGCCTTCATCATGAAGACGGCAGCCAGCACATCGGCCTC  735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GTTGCTGCAAACAAGATGCTCTCATCCTCCAGCGTGGCCTTCATCATGAAGACGGCAGCCAGCACATCGGCCTC  814

Query  736  CTGCATCCTGGGGACAGAGGGCCTGACCATGAGTACGTGCTGGTCGAGGAAGCGGAGTGTGCCATGAGCGAGAG  809
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CTGCATCCTGGGGACAGAGGGCCTGACCATGAGTACGTGCTGGTCGAGGAAGCGGAGTGTGCCATGAGCGAGAG  888

Query  810  GGAGGCTGCCCCAAATGAGGAATTGGTGCAAAGAAACAGGTTAATATGCAGAAGAAATCCATATAGGATCTTTG  883
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GGAGGCTGCCCCAAATGAGGAATTGGTGCAAAGAAACAGGTTAATATGCAGAAGAAATCCATATAGGATCTTTG  962

Query  884  AGTATTTGCAACTCAGCCTAGAAGAGGCCTTTTTCTTGGTCTATGCTCTGGGATGTTTAAGTATTTACTATGAG  957
            ||||||||||||||||||||||||||                                                
Sbjct  963  AGTATTTGCAACTCAGCCTAGAAGAG------------------------------------------------  988

Query  958  AAGGAGCCTTTAACGATAGTGAAGCTCTGGAAAGCTTTCACTGTAGTTCAGCCCACGTTCAGAACCACCTACAT  1031
                                                                                      
Sbjct  989  --------------------------------------------------------------------------  988

Query 1032  GGCCTACCATTACTTTCGAAGCAAGGGCTGGGTGCCCAAAGTGGGACTCAAGTACGGGACAGATTTACTGCTAT  1105
                                                                                ||||||
Sbjct  989  --------------------------------------------------------------------TGCTAT  994

Query 1106  ATCGGAAAGGCCCTCCATTTTACCATGCAAGTTATTCTGTCATTATCGAGCTAGTTGATGACCATTTTGAAGGC  1179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  995  ATCGGAAAGGCCCTCCATTTTACCATGCAAGTTATTCTGTCATTATCGAGCTAGTTGATGACCATTTTGAAGGC  1068

Query 1180  TCTCTCCGCAGGCCTCTCAGTTGGAAGTCCCTGGCTGCCTTGAGCAGAGTTTCCGTTAATGTCTCTAAGGAACT  1253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069  TCTCTCCGCAGGCCTCTCAGTTGGAAGTCCCTGGCTGCCTTGAGCAGAGTTTCCGTTAATGTCTCTAAGGAACT  1142

Query 1254  TATGCTGTGCTATTTGATTAAACCCTCTACTATGACTGACAAGGAAATGGAGTCACCAGAATGTATGAAAAGGA  1327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143  TATGCTGTGCTATTTGATTAAACCCTCTACTATGACTGACAAGGAAATGGAGTCACCAGAATGTATGAAAAGGA  1216

Query 1328  TTAAAGTTCAGGAGGTGATTCTGAGTCGATGGGTTTCTTCACGAGAGAGGAGTGACCAAGACGATCTT------  1395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct 1217  TTAAAGTTCAGGAGGTGATTCTGAGTCGATGGGTTTCTTCACGAGAGAGGAGTGACCAAGACGATCTTTAACAA  1290

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1291  TTCAACCTCAAATTTCTAATTTCACCAACAACTATTTATTGAGGGCTAGTTTCTCATCCCAGTTTCCCCAGCCT  1364

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1365  CCTGTGAAGGTGTCAGAGAAAGAAGATAGCCCTCTCTTCATGTGCTTTCTGAACTCTGCCTTTTCAGTGGGCAG  1438

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1439  AGGAAGTGCTTTGTAGCAGCAAACCCAACCCCTGAGCCTCCATGTGTCGGGTCAGGCAAAATGAAATTGACACA  1512

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1513  GGCTGGAATTTTACTGATTTCAGTCATTGCTGGGCTCGTTTGTGCAAATAGACTCAGAAGAGCTCCTTTAAAAG  1586

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1587  GAGTGACCATTTCCTGATTTAGATTCTGAGGGGGTTTTTGGTTTTTTTTACTGTTGTTCACTATCATGAGCTTA  1660

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1661  CCATGTGCTTTTTTCTTTTTTTTTTTCTTGTGATGTAGTCTCGCTCTGTCGTCCAGGCTGGAGTCCAATGCTGC  1734

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1735  GATCTTGGATCACTGCAACCTCTGCCTGCTGGGTTTAAGCGATTCTCATGCCTCAGCCTCCTGAGTAGCTGGGA  1808

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1809  TTACAGGCACGCACCACCACACACGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACTATGTTGGCCAG  1882

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1883  GCTGGTCTGGAACTCCTGACCTCAAGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGAGAGTACAGGCGTGAG  1956

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1957  CCACTGCATCCAGCTCTTAGCATGTGCTTTTAAAGTAAAAACCACGAGGAGAAGGTACTCATTACTTCATAACT  2030

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2031  TGTGTCTCACCCACCTTGCTGTCTTCACATCCCCACTTTCTGTATGCACATTGGAAGGTGAATTTGTTCAGCTC  2104

Query 1396  ----------------------------------------------------------  1395
                                                                      
Sbjct 2105  ACATTAATTTATAGGAATAATTTTCATTGCTCTGTGAATAAAATGTGCTACCACTTTA  2162

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