Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09195
Subject:
NM_001291054.1
Aligned Length:
2523
Identities:
2178
Gaps:
27

Alignment

Query    1  ATGAATGGAGAGTATAGAGGCAGAGGATTTGGACGAGGAAGATTTCAAAGCTGGAAAAGGGGAAGAGGTGGTGG  74
            ||||.|||.|..||||||||||||||.|||||||||||||||||.||||||||||||||.||||||||||||||
Sbjct    1  ATGAGTGGTGCTTATAGAGGCAGAGGTTTTGGACGAGGAAGATTCCAAAGCTGGAAAAGAGGAAGAGGTGGTGG  74

Query   75  GAACTTCTCAGGAAAATGGAGAGAAAGAGAACACAGACCTGATCTGAGTAAAACCACAGGAAA--ACGTACTTC  146
            ||||||||||||||..|||||||||||||||.|||||..|||.||||.|.||.|..|||||||  |||  ||||
Sbjct   75  GAACTTCTCAGGAAGGTGGAGAGAAAGAGAAAACAGAGTTGACCTGAATGAAGCTTCAGGAAAGCACG--CTTC  146

Query  147  TGAACAAACCCCACAGTTTTTGCTTTCAACAAAGACCCCACAGTCAATGCAGTCAACATTGGATCGATTCATAC  220
            ||.||||.||.||||....||.| |||||                    ||||||||||||||||..||.||.|
Sbjct  147  TGCACAAGCCTCACAACCGTTAC-TTCAA--------------------CAGTCAACATTGGATCAGTTTATCC  199

Query  221  CATATAAAGGCTGGAAGCTTTATTTCTCTGAAGTTTACAGCGATAGCTCTCCTTTGATTGAGAAGATTCAAGCA  294
            |.|||||.||||||||||||||.|||||||||||||||||..|||.||||||.||.||||||||||||||||||
Sbjct  200  CGTATAAGGGCTGGAAGCTTTACTTCTCTGAAGTTTACAGTAATAACTCTCCCTTTATTGAGAAGATTCAAGCA  273

Query  295  TTTGAAAAATTTTTCACAAGGCATATTGATTTGTATGACAAGGATGAAATAGAAAGAAAGGGAAGTATTTTGGT  368
            |||||.||||||||||||||||||||.||.||.||.||.||||||||||||||||||||.|||||.||||||||
Sbjct  274  TTTGAGAAATTTTTCACAAGGCATATCGACTTATACGATAAGGATGAAATAGAAAGAAAAGGAAGCATTTTGGT  347

Query  369  AGATTTTAAAGAACTGACAGAAGGTGGTGAAGTAACTAACTTGATACCAGATATAGCAACTGAACTAAGAGATG  442
            .||||||||||||||||||.|||.||.||||.||||||||||||||||.|||||||.||..|.|||||||||||
Sbjct  348  GGATTTTAAAGAACTGACAAAAGCTGATGAAATAACTAACTTGATACCCGATATAGAAAACGCACTAAGAGATG  421

Query  443  CACCTGAGAAAACCTTGGCTTGCATGGGTTTGGCAATACATCAGGTGTTAACTAAGGACCTTGAAAGGCATGCA  516
            |.|||||||||||..||||.||.|||||..||||||||||||||||.||||||||||||||||||||||||||.
Sbjct  422  CCCCTGAGAAAACACTGGCGTGTATGGGGCTGGCAATACATCAGGTATTAACTAAGGACCTTGAAAGGCATGCC  495

Query  517  GCTGAGTTACAAGCCCAGGAAGGATTGTCTAATGATGGAGAAACAATGGTAAATGTGCCACATATTCATGCAAG  590
            ||.||.||||||||.||.||.|||||||||||.|.||||||.||||||||||||||.|||||||||.|||||||
Sbjct  496  GCCGAATTACAAGCTCAAGAGGGATTGTCTAACGGTGGAGAGACAATGGTAAATGTACCACATATTTATGCAAG  569

Query  591  GGTGTACAACTATGAGCCTTTGACACAGCTCAAGAATGTCAGAGCAAATTACTATGGAAAATACATTGCTCTAA  664
            .|||||||||||||||||.||||||||.|||||||||.||.||||||.||.||||||.||||||||..||.||.
Sbjct  570  AGTGTACAACTATGAGCCCTTGACACACCTCAAGAATATCCGAGCAACTTGCTATGGGAAATACATCTCTATAC  643

Query  665  GAGGGACAGTGGTTCGTGTCAGTAATATAAAGCCTCTTTGCACCAAGATGGCTTTTCTTTGTGCTGCATGTGGA  738
            |||||||.|||||.||.|||||.||.||||||||||||||||||||.||||||||||..||.||||||||||||
Sbjct  644  GAGGGACTGTGGTCCGGGTCAGCAACATAAAGCCTCTTTGCACCAACATGGCTTTTCAGTGCGCTGCATGTGGA  717

Query  739  GAAATTCAGAGCTTTCCTCTTCCAGATGGAAAATACAGTCTTCCCACAAAGTGTCCTGTGCCTGTGTGTCGAGG  812
            ||.|||||||||||||||||.||||||||||||||||..|||||.|||||||||||||||||||.|||.|||||
Sbjct  718  GAGATTCAGAGCTTTCCTCTGCCAGATGGAAAATACACCCTTCCTACAAAGTGTCCTGTGCCTGCGTGCCGAGG  791

Query  813  CAGGTCATTTACTGCTCTCCGCAGCTCTCCTCTCACAGTTACGATGGACTGGCAGTCAATCAAAATCCAGGAAT  886
            .|||||||||.||.|.||.|||||||||||||||||||||||..||||||||||||..||||||||||||||..
Sbjct  792  GAGGTCATTTGCTCCACTGCGCAGCTCTCCTCTCACAGTTACACTGGACTGGCAGTTGATCAAAATCCAGGAGC  865

Query  887  TGATGTCTGATGATCAGAGAGAAGCAGGTCGGATTCCACGAACAATAGAATGTGAGCTTGTTCATGATCTTGTG  960
            ||||||||||||..|||||||||||.||||||||.||.||.||.|||||||||||.||||||||.||||||||.
Sbjct  866  TGATGTCTGATGCACAGAGAGAAGCTGGTCGGATCCCTCGGACGATAGAATGTGAACTTGTTCACGATCTTGTA  939

Query  961  GATAGCTGTGTCCCGGGAGACACAGTGACTATTACTGGAATTGTCAAAGTCTCAAATGCGGAAGAAGGTTCTCG  1034
            |||||.||||||||.|||||.|||||||||.||||||||||||||||||||||.|||.|.||||||||||||||
Sbjct  940  GATAGTTGTGTCCCAGGAGATACAGTGACTGTTACTGGAATTGTCAAAGTCTCCAATTCTGAAGAAGGTTCTCG  1013

Query 1035  AAATAAGAATGACAAGTGTATGTTCCTTTTGTATATTGAAGCAAATTCTATTAGTAATAGCAAAGGACAGAAAA  1108
            ||||||||||||.|||||.||||||||||||||.|||||.|||||||||.||||.||.|||||.||.|.||||.
Sbjct 1014  AAATAAGAATGATAAGTGCATGTTCCTTTTGTACATTGAGGCAAATTCTGTTAGCAACAGCAAGGGGCCGAAAG  1087

Query 1109  CAAAGAGTTCTGAGGATGGGTGTAAGCATGGAATGTTGATGGAGTTCTCACTTAAAGACCTTTATGCCATCCAA  1182
            ||.|||.|.|.||.|||||.||.||||||||.|...|||||||||||||.|||||||||||.||||||||||.|
Sbjct 1088  CACAGACTGCAGAAGATGGTTGCAAGCATGGGACACTGATGGAGTTCTCCCTTAAAGACCTCTATGCCATCCGA  1161

Query 1183  GAGATTCAAGCTGAAGAAAACCTGTTTAAACTCATTGTCAACTCGCTTTGCCCTGTCATTTTTGGTCATGAACT  1256
            |||||.||.||||||||.||||||.|.||.|||.||||||||||.||.||.|||||||||||||||||||||||
Sbjct 1162  GAGATCCAGGCTGAAGAGAACCTGCTCAAGCTCGTTGTCAACTCACTCTGTCCTGTCATTTTTGGTCATGAACT  1235

Query 1257  TGTTAAAGCAGGTTTGGCATTAGCACTCTTTGGAGGAAGCCAGAAATACGCAGATGACAAAAACAGAATTCCAA  1330
            .||.|||||||||.||.|.||||||||||||||.||.||||||||.||||||||||||||||||||||||||.|
Sbjct 1236  CGTCAAAGCAGGTCTGACGTTAGCACTCTTTGGCGGTAGCCAGAAGTACGCAGATGACAAAAACAGAATTCCCA  1309

Query 1331  TTCGGGGAGACCCCCACATCCTTGTTGTTGGAGATCCAGGCTTAGGAAAAAGTCAAATGCTACAGGCAGCGTGC  1404
            ||||.||||||||.||..||||..|||||||||||||||||||.||.||.|||||.||||||||||||||.|||
Sbjct 1310  TTCGAGGAGACCCACATGTCCTGATTGTTGGAGATCCAGGCTTGGGGAAGAGTCAGATGCTACAGGCAGCATGC  1383

Query 1405  AATGTTGCCCCACGTGGCGTGTATGTTTGTGGTAACACCACGACCACCTCTGGTCTGACGGTAACTCTTTCAAA  1478
            ||.||.||.||||||||.||||||||||||||.||.|||||.||||.|||||||||.||.||.|||||||||||
Sbjct 1384  AACGTGGCGCCACGTGGTGTGTATGTTTGTGGAAATACCACCACCAGCTCTGGTCTCACTGTGACTCTTTCAAA  1457

Query 1479  AGATAGTTCCTCTGGAGATTTTGCTTTGGAAGCTGGTGCCCTGGTACTTGGTGATCAAGGTATTTGTGGAATCG  1552
            .||.||||||||||||||||||||||||||||||||||||||.|||||||||||.|||||.||.||||||||.|
Sbjct 1458  GGACAGTTCCTCTGGAGATTTTGCTTTGGAAGCTGGTGCCCTTGTACTTGGTGACCAAGGCATCTGTGGAATAG  1531

Query 1553  ATGAATTTGATAAGATGGGGAATCAACATCAAGCCTTGTTGGAAGCCATGGAGCAGCAAAGTATTAGTCTTGCT  1626
            |||||||||||||.||||||||.||||||||||||.||||.|||||||||||.|||||.||||||||.|||||.
Sbjct 1532  ATGAATTTGATAAAATGGGGAACCAACATCAAGCCCTGTTAGAAGCCATGGAACAGCAGAGTATTAGCCTTGCG  1605

Query 1627  AAGGCTGGTGTGGTTTGTAGCCTTCCTGCAAGAACTTCCATTATTGCTGCTGCAAATCCAGTTGGAGGACATTA  1700
            ||||||||.||.|||||.|||||.||||||||||||||||||||||||||||||||||||||.||||||||.||
Sbjct 1606  AAGGCTGGGGTAGTTTGCAGCCTCCCTGCAAGAACTTCCATTATTGCTGCTGCAAATCCAGTCGGAGGACACTA  1679

Query 1701  CAATAAAGCCAAAACAGTTTCTGAGAATTTAAAAATGGGGAGTGCACTACTATCCAGATTTGATTTGGTCTTTA  1774
            |||||||||||.|||.|||||||||||||||||.|||||||||||.|||||.||||||||.|||||||||||||
Sbjct 1680  CAATAAAGCCAGAACGGTTTCTGAGAATTTAAAGATGGGGAGTGCCCTACTGTCCAGATTCGATTTGGTCTTTA  1753

Query 1775  TCCTGTTAGATACTCCAAATGAGCATCATGATCACTTACTCTCTGAACATGTGATTGCAATAAGAGCTGGAAAG  1848
            ||.||||||||||.||||||||.||.|||||.||||||||.||||||||||||||.||.|||||||||||.|||
Sbjct 1754  TCTTGTTAGATACGCCAAATGAACAGCATGACCACTTACTTTCTGAACATGTGATCGCGATAAGAGCTGGGAAG  1827

Query 1849  CAGAGAACCATTAGCAGTGCCACAGTAGCTCGTATGAATAGTCAAGATTCAAATACTTCCGTACTTGAAGTAGT  1922
            ||||.|.|..||||||||||||||||..|||||.||...||||||||.|||||||||||.|||||||||||.||
Sbjct 1828  CAGAAAGCGGTTAGCAGTGCCACAGTCACTCGTGTGCTCAGTCAAGACTCAAATACTTCTGTACTTGAAGTGGT  1901

Query 1923  TTCTGAGAAGCCATTATCAGAAAGACTAAAGGTGGTTCCTGGAGAAACA-ATAGATCCCATTCCCCACCAGCTA  1995
            |||||||||.|||||||||||||||||||||||||.|||||||| |||| |.||||||.|||||.||.|||||.
Sbjct 1902  TTCTGAGAAACCATTATCAGAAAGACTAAAGGTGGCTCCTGGAG-AACAGACAGATCCGATTCCACATCAGCTG  1974

Query 1996  TTGAGAAAGTACATTGGCTATGCTCGGCAGTATGTGTACCCAAGGCTATCCACAGAAGCTGCTCGAGTTCTTCA  2069
            |||||.|||||||||||||||||.|||||||||||..||||||||.||||.||.||.|||||||..|..|||||
Sbjct 1975  TTGAGGAAGTACATTGGCTATGCACGGCAGTATGTCCACCCAAGGTTATCTACGGACGCTGCTCAGGCCCTTCA  2048

Query 2070  AGATTTTTACCTTGAGCTCCGGAAACAGAGCCAGAGGTTAAATAGCTCACCAATCACTACCAGGCAGCTGGAAT  2143
            .|||||.|||||.||||||||.||.|||||||||.|..|....||||||||.|||||.||..||||||||||.|
Sbjct 2049  GGATTTCTACCTGGAGCTCCGCAAGCAGAGCCAGCGCGTGGGCAGCTCACCCATCACCACTCGGCAGCTGGAGT  2122

Query 2144  CTTTGATTCGTCTGACAGAGGCACGAGCAAGGTTGGAATTGAGAGAGGAAGCAACCAAAGAAGACGCTGAGGAT  2217
            |||||||.|||||||||||||||||.||||||||.||||||||||||||||||||.|.||||||.|||||.|||
Sbjct 2123  CTTTGATCCGTCTGACAGAGGCACGGGCAAGGTTAGAATTGAGAGAGGAAGCAACTAGAGAAGATGCTGAAGAT  2196

Query 2218  ATAGTGGAAATTATGAAATATAGCATGCTAGGAACTTACTCTGATGAATTTGGGAACCTAGATTTTGAGCGATC  2291
            |||.|.|||||||||||..||||||||||||||||||||||.||||||||.||.|||||.||.|||||||||||
Sbjct 2197  ATAATTGAAATTATGAAGCATAGCATGCTAGGAACTTACTCAGATGAATTCGGAAACCTGGACTTTGAGCGATC  2270

Query 2292  CCAGCATGGTTCTGGAATGAGCAACAGGTCAACAGCGAAAAGATTTATTTCTGCTCTCAACAACGTTGCTGAAA  2365
            |||||||||.|||||.||||||||||||||||||||.|||||||||||||||||||||||||.|.|||||||||
Sbjct 2271  CCAGCATGGCTCTGGGATGAGCAACAGGTCAACAGCAAAAAGATTTATTTCTGCTCTCAACAGCATTGCTGAAA  2344

Query 2366  GAACTTATAATAATATATTTCAATTTCATCAACTTCGGCAGATTGCCAAAGAACTAAACATTCAGGTTGCTGAT  2439
            ||||||||||.||.||||||||||.||||||||||||.||||||||.|||||||||||||||||||||||.|||
Sbjct 2345  GAACTTATAACAACATATTTCAATATCATCAACTTCGTCAGATTGCTAAAGAACTAAACATTCAGGTTGCCGAT  2418

Query 2440  TTTGAAAATTTTATTGGATCACTAAATGACCAGGGTTACCTCTTGAAAAAAGGCCCAAAAGTTTACCAGCTTCA  2513
            ||||||||.||.|||||||||||.||||||||.|||||.||||||||.|||||||||||..|||||||.|||||
Sbjct 2419  TTTGAAAACTTCATTGGATCACTGAATGACCAAGGTTATCTCTTGAAGAAAGGCCCAAAGATTTACCAACTTCA  2492

Query 2514  AACTATG  2520
            |||||||
Sbjct 2493  AACTATG  2499

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