Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_09276
- Subject:
- XR_378276.3
- Aligned Length:
- 2685
- Identities:
- 1585
- Gaps:
- 840
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGAGGCTTCAATCCCTGCTGCTTACTCCGGGACAGAAACGCACACCTCTGGGACTGAGGGTTTTTGCTGGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAGCAGCACCTGCTTTGAGGTGTCCAGATCTCCCCGACAAAAGCGCTTGGTACAGCCCGGGGATTCCCCGCTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGCCGCCCTGACGTCATGGAGTCCCCGGGAGGCTCCGCCCCCCTGCTCGGGCTGGAGCTTTGCGCGGCCGCTA 222
Query 1 --------------ATGGCGGGGCCGGGCGTC---------CCCGGTGCCCCCGCAGCGCGCTGGAAACGCCAC 51
|||||.||.||.||||.| |||.|.||.|||||.||...||||||.||||||
Sbjct 223 GGGACTCGGCGGCCATGGCAGGACCTGGCGCCCCCTGCGATCCCTGCGCGCCCGCCGCTGTCTGGAAGCGCCAC 296
Query 52 ATCGTGCGGCAGCTGCGGCTTCGGGACCGTACGCAAAAGGCGCTTTTCCTGGAGCTGGTGCCGGCCTATAACCA 125
|||||||||||||||||||.|||||||||.||||||||||||||.|||||||||||.||||||||.||||||||
Sbjct 297 ATCGTGCGGCAGCTGCGGCATCGGGACCGCACGCAAAAGGCGCTCTTCCTGGAGCTAGTGCCGGCTTATAACCA 370
Query 126 TCTCTTAGAGAAGGCTGAGCTGCTGGACAAGTTCTCAAAGAAGCTGCAGCCGGAGCCAAACAGTGTCACTC-CC 198
||||.|||||||||||||.|||||.|.||||||||||.|.|||.||.||.|.||.|||||...||.|| || ||
Sbjct 371 TCTCCTAGAGAAGGCTGAACTGCTAGCCAAGTTCTCAGAAAAGTTGAAGTCCGAACCAAAGGATGCCA-TCTCC 443
Query 199 ACCACCCACCAGGGCCCCTGGGAGGAG---TCAGAGCTTGACTCAGACCAAGTCCCATCACTGGTCGCACTGAG 269
|||...||..|||.|....|||||||| ||||.|...|.|.|.|||||||||.||||||..|.|.|.|||||
Sbjct 444 ACCCGACATGAGGACTGGAGGGAGGAGGTCTCAGGGACAGGCCCTGACCAAGTCTCATCACCAGCCTCTCTGAG 517
Query 270 GGTGAAGTGGCAGGAGGAGGAGGAGGGGCTCCGGCTGGTCTGTGGTGAGATGGCCTACCAGGTGGTGGAGAAGG 343
|||||||||||||.|||||.||.|||||||.|.||||||||||||||||||||||||||||||||||.|||||.
Sbjct 518 GGTGAAGTGGCAGCAGGAGAAGAAGGGGCTGCAGCTGGTCTGTGGTGAGATGGCCTACCAGGTGGTGAAGAAGA 591
Query 344 GCGCGGCCCTGGGCACGCTGGAGTCGGAGCTGCAGCAGAGGCAAAGCAGGCTGGCAGCCCTGGAGGCCCGCGTG 417
||||.|||||.|.|||.|||.||||..|||||.||.||.||||...||||.|||.|||||||.|||||.|||||
Sbjct 592 GCGCAGCCCTAGACACCCTGCAGTCACAGCTGGAGGAGCGGCAGGACAGGTTGGAAGCCCTGCAGGCCTGCGTG 665
Query 418 GCGCAGCTGCGAGAGGCGCGGGCGCAGCAGGCCCAGCAGGTGGAGGAGTGGCGGGCGCAGAATGCGGTGCAGCG 491
|.||||||.|..|||||||||||.||||||.|||.||||.|||||||..|||..|||.||||.||.|..|||.|
Sbjct 666 GTGCAGCTACAGGAGGCGCGGGCTCAGCAGTCCCGGCAGCTGGAGGAACGGCAAGCGGAGAACGCAGCACAGAG 739
Query 492 GGCAGCCTACGAGGCGCTGCGCGCGCACGTCGGGCTCCGGGAGGCGGCACTGCGCAGGCTCCAGGAAGAGGCGC 565
.|.||||||.|||.||||||.|..|||.|..|.||.||.|||||||||||||||||||||||||||||||||.|
Sbjct 740 AGAAGCCTATGAGACGCTGCTCCAGCAAGCTGTGCACCAGGAGGCGGCACTGCGCAGGCTCCAGGAAGAGGCAC 813
Query 566 GCGACCTGCTGGAGAGGCTCGTGCAGCGCAAGGCGCGCGCCGCGGCCGAGCGCAACCTGCGCAACGAGCGCCGG 639
|||||.||||||||..|||.||||||||.||||||||||||||.||.||||||||.||.||.||.|||||..|.
Sbjct 814 GCGACTTGCTGGAGCAGCTTGTGCAGCGTAAGGCGCGCGCCGCCGCTGAGCGCAATCTACGTAATGAGCGTAGA 887
Query 640 GAGCGGGCCAAGCAGGCGCGGGTGTCCCAGGAGCTGAAGAAGGCTGCCAAGCGGACCGTGAGCATCAGCGAGGG 713
|||.|||||||.|||||.|.|||||||||||||||||||||.||.||.||||||||.|||||||||||||||..
Sbjct 888 GAGAGGGCCAACCAGGCTCTGGTGTCCCAGGAGCTGAAGAAAGCGGCTAAGCGGACTGTGAGCATCAGCGAGAT 961
Query 714 CCCGGACACCCTAGGCGATTGGATGAGGGAGAGAAGGGAGACTCTGGCTCTGGCCCCTG------AGCCAGAGC 781
|||..||||.||||..|||.||| .||.|||| ||||||.|||||||.||.|||| .|||.|||.
Sbjct 962 CCCAAACACTCTAGAAGATGGGA----CGAAAGAA--GAGACTGTGGCTCTAGCTCCTGCCGCTCTGCCTGAGT 1029
Query 782 CCCTGGAGAAGGAAGCTTGTGAGAAGTGGAAGAGGCCCTTCAGGTCTGCCTCAGCCACCTCCCTGACGCTGTCC 855
.|...||||..||..|||||||.||.|||||||||||.||||||||||||||.||||||||||||||.||||||
Sbjct 1030 TCTCAGAGAGTGAGACTTGTGAAAAATGGAAGAGGCCTTTCAGGTCTGCCTCGGCCACCTCCCTGACACTGTCC 1103
Query 856 CACTGTGTGGATGTGGTGAAGGGGCTTCTGGATTTTAAGAAGAGGAGAGGTCACTCAATTGGGGGAGCCCCTGA 929
|.||||||||||||||||||||||||..||||.||.|||||.||.|||||||||||..|||||||.||.|||||
Sbjct 1104 CGCTGTGTGGATGTGGTGAAGGGGCTGTTGGACTTCAAGAAAAGAAGAGGTCACTCGGTTGGGGGCGCACCTGA 1177
Query 930 GCAGCGATACCAGATCATCCCTGTGTGTGTGGCTGCCCGACTTCCTACCCGGGCTCAGGATGTGCTGGATGCCC 1003
||||||.|||||.|.||||||||||||||||.||||||.|.||||..|||.||||||||||||..|||||||||
Sbjct 1178 GCAGCGGTACCAAAGCATCCCTGTGTGTGTGTCTGCCCAAATTCCCTCCCAGGCTCAGGATGTCTTGGATGCCC 1251
Query 1004 ACCTCTCTGAGGTCAATGCTGTTCGTTTTGGCCCCAACAGCAGCCTCCTGGCCACTGGAGGGGCTGACCGCCTG 1077
|.|||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1252 ATCTCTCTGAGGTCAATGCTGTTTGTTTTGGCCCCAACAGCAGCCTCCTGGCCACTGGAGGGGCTGACCGGCTG 1325
Query 1078 ATCCACCTCTGGAATGTTGTGGGAAGTCGCCTGGAGGCCAACCAGACCCTGGAGGGAGCTGGTGGCAGCATCAC 1151
||||||||||||||||||||.|||.||||||||||||||||||||||||||||.||||||||.|||||||||||
Sbjct 1326 ATCCACCTCTGGAATGTTGTAGGAGGTCGCCTGGAGGCCAACCAGACCCTGGAAGGAGCTGGCGGCAGCATCAC 1399
Query 1152 CAGTGTGGACTTTGACCCCTC----------------------------------------------------- 1172
|||||||||.|||||||||||
Sbjct 1400 CAGTGTGGATTTTGACCCCTCAGTAAGGAGACTTTGTCCCACAGCATAGATGTCACTGCAGTCTCCACACTGGG 1473
Query 1173 -------------------------------------------------------------------------- 1172
Sbjct 1474 CAGTGGGCTCCCCTTGGAGCCATGGCTCGCCTCAGTGACAAGGAAGCTTGGAGACAGCCTCTACCCTGGCTCTC 1547
Query 1173 -----------------------------------------------GGGCTACCAGGTTTTAGCAGCAACTTA 1199
|||||.|||||||||.|||||.|||||
Sbjct 1548 TGACCTGATCTAGTGATGTCCAGGGCCTTTCCTTCTCCCTCTCTCCAGGGCTCCCAGGTTTTGGCAGCTACTTA 1621
Query 1200 CAACCAGGCTGCCCAGCTCTGGAAGGTGGGGGAGGCACAGTCCAAGGAGACACTGTCTGGACACAAGGATAAGG 1273
||||||||||||||||||||||||||||||.|||.|.|||||||||||.|||.||||.|||||||||||.||.|
Sbjct 1622 CAACCAGGCTGCCCAGCTCTGGAAGGTGGGAGAGACTCAGTCCAAGGAAACATTGTCCGGACACAAGGACAAAG 1695
Query 1274 TGACAGCTGCCAAATTCAAGCTAACGAGGCACCAGGCAGTGACTGGGAGCCGCGACCGGACAGTGAAGGAGTGG 1347
||||.||||||||||||||||||||.||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 1696 TGACTGCTGCCAAATTCAAGCTAACAAGGCACCAGGCAGTGACTGGGAGCCGAGACCGGACAGTGAAGGAGTGG 1769
Query 1348 GACCTCGGCCGTGCCTA-------------------TTGC---------------------------------- 1368
|||||.|||||.||||| ||||
Sbjct 1770 GACCTGGGCCGCGCCTACTGTGAGGCCCAATCCCATTTGCCCCCAGCTCTCAGTCATCGGGGCCCTTACCTTGC 1843
Query 1369 -------------------------------------------------------------------------- 1368
Sbjct 1844 TATGTTGTGGTAGCCGCGGGACTCATATTCATTTGGGCTCAGCCTTCTAATGATTTCCTTCTCTGTCACTGCTG 1917
Query 1369 -------------------------------------TCCAGGACCATCAATGTCCTTTCCTACTGTAATGACG 1405
||||||||.||||||||.|||||||||||.|||||||
Sbjct 1918 CTCCTTTCCTGCTTTCTTGGTAACCCTGGCCTTTGGTTCCAGGACTATCAATGTACTTTCCTACTGCAATGACG 1991
Query 1406 TGGTGTGTGGGGACCATATCATCATTAGTGGCCACAATGACCAGAAGATCCGGTTCTGGGACAGCAGGGGGCCC 1479
|||||||.||||||||.||||||||.|||||||||||||||||.||||||||||||||||||||||||||.||.
Sbjct 1992 TGGTGTGCGGGGACCACATCATCATCAGTGGCCACAATGACCAAAAGATCCGGTTCTGGGACAGCAGGGGCCCT 2065
Query 1480 CACTGCACCCAGGTCATCCCTGTGCAGGGCCGGGTCACCTCCCTGAGCCTCAGCCACGACCAACTGCACCTGCT 1553
|||||||.||||||||||||.||||||||||||||.|||||||||..|||||||.|.|||||.|||||.|||||
Sbjct 2066 CACTGCATCCAGGTCATCCCCGTGCAGGGCCGGGTTACCTCCCTGCACCTCAGCTATGACCAGCTGCATCTGCT 2139
Query 1554 CAGCTGTTCCCGAGACAACACACTCAAGGTCATCGACCTGCGTGTCAGCAACATCCGCCAGGTGTTCAGGGCCG 1627
.|||||||||||||||||||||||||||||.|||||||||||..|||||||.|||||.|||||||||| |
Sbjct 2140 TAGCTGTTCCCGAGACAACACACTCAAGGTTATCGACCTGCGAATCAGCAATATCCGACAGGTGTTCA-----G 2208
Query 1628 ATGGCTTCAAGTGTGGTTCTGACTGGACCAAAGCTGTGTTCAGCCCGGACAGAAGCTATGCACTGGCAGGCTCC 1701
|||||||||||||..|||||||||||||||||||||||||||||||.||||||||||||||||||||||||||.
Sbjct 2209 ATGGCTTCAAGTGCAGTTCTGACTGGACCAAAGCTGTGTTCAGCCCTGACAGAAGCTATGCACTGGCAGGCTCT 2282
Query 1702 TGTGATGGGGCCCTTTACATCTGGGATGTGGACACCGGGAAACTGGAGAGCAGACTACAGGGACCCCATTGCGC 1775
|...|.||.|.|||.|||||||||||||||.||||||||||||||||||.|||.||||||||||||||.|||.|
Sbjct 2283 TCAAACGGCGACCTGTACATCTGGGATGTGAACACCGGGAAACTGGAGACCAGCCTACAGGGACCCCACTGCAC 2356
Query 1776 TGCCGTCAACGCCGTGGCCTGGTGCTACTCCGGGAGCCACATGGTGAGCGTGGACCAGGGCAGGAAGGTTGTGC 1849
|||.||.||.||||||||.|||||||.||||||||.||||.|.|||||.||||||||.|||||||||||.||||
Sbjct 2357 TGCTGTTAATGCCGTGGCTTGGTGCTTCTCCGGGAACCACGTTGTGAGTGTGGACCAAGGCAGGAAGGTGGTGC 2430
Query 1850 TCTGGCAG------------------------------------------------------------------ 1857
|||||||.
Sbjct 2431 TCTGGCACTGAGTGGCACAAGTTCCCTGTATGGGTTGGACTCTGAAGCCAGAAGCCAGAGAACAGCTTCCCTGT 2504
Query 1858 -------------------------------------------------------------------------- 1857
Sbjct 2505 GCTCAGGACTCCAGAGCTGGGGTTGGGGTCTACTACAGAATTCATGTGAGGGCCAGGCAGGACCTGGCCTGTTT 2578
Query 1858 -------------------------------------------------------------------------- 1857
Sbjct 2579 GTTAAAAATCAAAGTGTGGGTTAGGAACTACAGTTTTGTTTTTTAAAATCTATTTGTTTACTCTCTTCAGTGTT 2652
Query 1858 --------------------- 1857
Sbjct 2653 AAAAACTGTATCTAAGCCGTG 2673
